Digital Drosophila Archive
103 lines
3.1 KiB
YAML
103 lines
3.1 KiB
YAML
phase: 4D
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names:
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runtime: MaleCNS-LIF-runtime-v1
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io_api: MaleCNS-BrainIO-v1
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visual_adapter: MaleCNS-VisualAdapter-v1
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activity_stream: MaleCNS-ActivityStream-v1
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paths:
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connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
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model_root: /data/digital-drosophila/models/male-cns-lif
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runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
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phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
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experiment_root: /data/digital-drosophila/experiments/phase4d-io
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device:
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required_name_substring: RTX 4090
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launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
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model:
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dt_ms: 0.1
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membrane_tau_ms: 20.0
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synaptic_tau_ms: 5.0
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refractory_ms: 2.2
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resting_potential_mv: -52.0
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reset_potential_mv: -52.0
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threshold_mv: -45.0
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synaptic_delay_ms: 1.8
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w_syn_mv_per_anatomical_synapse: 0.275
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sign_policy:
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neurotransmitter_sign:
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acetylcholine: 1
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gaba: -1
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glutamate: -1
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histamine: -1
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dopamine: 1
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octopamine: 1
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serotonin: 1
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unknown_sign: 0
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unclear_sign: 0
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input_batch:
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version: 1.0.0
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allowed_modes: [spike_injection, external_synaptic_drive]
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refractory_respecting_spike_injection: true
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external_drive_application: add to g after decay and delayed-connectome arrival, before membrane integration
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visual_adapter:
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version: 1.0.0
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modes:
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reference-photoreceptor:
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hierarchy_population: visual_sensory
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input_mode: spike_injection
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biological_fidelity: reference_comparison_only
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engineering-first-order:
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hierarchy_population: first_order
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input_mode: external_synaptic_drive
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biological_fidelity: engineering_adapter
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engineering-second-order:
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hierarchy_population: second_order
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input_mode: external_synaptic_drive
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biological_fidelity: engineering_adapter
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synthetic_rate_hz: 50.0
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external_drive_mv: 8.0
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readout:
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bins_ms: [1, 5, 10, 20, 50]
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output_populations: [descending, motor_related, ascending]
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window_experiment:
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windows_ms: [5, 10, 20, 30, 50, 100]
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sources: [engineering-first-order, engineering-second-order, auditory, olfactory]
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seeds: [44001, 44002]
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continuous_control:
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biological_duration_ms: 1000.0
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periods_ms: [10, 20, 50, 100]
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sequence: [sparse-A, sparse-B, dense, zero, sparse-A]
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seed: 44100
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synthetic_patterns:
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sparse_fraction: 0.05
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dense_fraction: 0.25
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moving_fraction: 0.05
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deterministic_seed: 44200
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regression:
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float_absolute_tolerance: 0.00390625
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reference_trials:
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- {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
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- {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
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- {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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prohibitions:
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stable_retro: false
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rom_access: false
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controller_buttons: false
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training: false
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web_server: false
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connectome_or_sign_changes: false
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