Digital Drosophila Archive
40 lines
2.0 KiB
Markdown
40 lines
2.0 KiB
Markdown
# Terminal-scope diagnostic v1 (Phase 4AB)
|
|
|
|
Independent engineering counterfactual harness, **not a formal brain model**.
|
|
Read `PROTOCOL.md` before interpreting any result. Frozen input datasets and
|
|
scientific sources are mandatory; no data are fetched by this stage.
|
|
|
|
## Sequence
|
|
|
|
Use the existing scientific environment with `PYTHONDONTWRITEBYTECODE=1`,
|
|
`OMP_NUM_THREADS=4`, `OPENBLAS_NUM_THREADS=4`, `MKL_NUM_THREADS=4`:
|
|
|
|
1. `python -B -m unittest -v test_scope`
|
|
2. `python -B diagnostic.py prepare` (new empty experiment directory only)
|
|
3. `python -B validate.py`
|
|
4. `python -B launch.py` (explicit frozen module paths, single 4090)
|
|
5. `python -B environment.py`
|
|
6. `python -B analyze.py`
|
|
7. `python -B diagnostic.py finalize`
|
|
8. `python -B publish.py` (new small Git evidence copies only)
|
|
|
|
The completed output is sealed. **Do not rerun these commands into its directory.**
|
|
Unit tests may be rerun read-only. An independent full replication requires a new
|
|
isolated experiment/model directory, with its paths changed consistently in the
|
|
copied configuration/entry points before preregistration. Retain this original
|
|
source and every old output. The current protocol also includes four in-run exact
|
|
repeats, six historical exact comparisons and five archived reference checks.
|
|
|
|
`launch.py` fixes the initial import-path failure without editing the five
|
|
preregistered source/config files. `analyze.py` is a post-hoc summary only and
|
|
does not launch any additional experiment or fit any parameter. Additional helper
|
|
hashes and imported code hashes are captured in the final manifest/protocol.
|
|
|
|
The existing environment is reused, never upgraded. ComfyUI queues are checked
|
|
between trials; a busy service causes deferral, not eviction. Performance includes
|
|
observation overhead. The historical APL graded input/output remains unchanged.
|
|
|
|
All-fast-PN-output blockade is not somatic silencing and not a complete knockout:
|
|
PN spikes still contribute to the frozen graded APL input. `primary_post` is a
|
|
postsynaptic ROI label, not a reconstructed bouton identity. Unknown stays unknown.
|