Digital Drosophila Archive
83 lines
3.3 KiB
JSON
83 lines
3.3 KiB
JSON
{
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"code": {
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"config.yaml": {
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"path": "/data/digital-drosophila/models/male-cns-lif/reference-v1/config.yaml",
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"sha256": "3c8651a903302845020917e8c7fee5caa39b6d2bef167a8a448c1a7560689414"
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},
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"model.py": {
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"path": "/data/digital-drosophila/models/male-cns-lif/reference-v1/model.py",
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"sha256": "693468685a7ff3db1d09a088e0bbdaa78c595d64086b27e9cc18abceb4c7d174"
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}
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},
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"description": "Shiu-like LIF dynamics adapted to MaleCNS v1.0",
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"graph": {
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"directed_edges": 25582938,
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"isolated_neurons": 217,
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"neurons": 166700,
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"self_loops": 101,
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"synaptic_contact_weight_sum": 124177617
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},
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"inputs": {
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"csr_metadata": {
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"path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/gpu/csr-metadata.json",
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"sha256": "3786a0c79fc25bdc4d11f67d4de1f9f6a88da750431e96508bf72bbfa42bb6f8"
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},
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"indices": {
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"path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/gpu/csr-indices.int32.npy",
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"sha256": "ce20f7433f78442c717ad2a7b5394cf4a3b109d990b4be0788040b7b0f4ed150"
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},
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"indptr": {
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"path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/gpu/csr-indptr.int64.npy",
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"sha256": "fe43420f11e6242a11f8199ae7f097cab4b8a6db181d36f2a46b9e46670acbb4"
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},
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"mapping": {
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"path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/neuron-index/body-id-neuron-idx.parquet",
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"sha256": "2b615c00d290e34fbe7792a5050eee4ce086446cd54ec89c96d7b1bc4a8e6009"
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},
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"metadata": {
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"path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/neuron-index/unified-metadata.parquet",
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"sha256": "922af16846a065c3dbfca7c11146b83ca217fcbd7392edc745f444a04eae8c63"
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},
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"raw_weights": {
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"path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/gpu/csr-weights.int64.npy",
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"sha256": "c7ae101451dd19c47fd976bcfacbc52d67193a68ffa04c5b4d2e911cfd52d99b"
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}
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},
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"local_repository_commit": "d826733f1c620a2ad0b096c846b9b8e9eb3ac0fa",
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"name": "MaleCNS-LIF-reference-v1",
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"not_claimed": "strict Shiu 2024 original-model reproduction",
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"parameters": {
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"dt_ms": 0.1,
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"integration": "forward_euler",
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"membrane_tau_ms": 20.0,
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"refractory_g_policy": "g continues to decay and receive exact delayed events while v is clamped at V_reset",
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"refractory_ms": 2.2,
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"reset_potential_mv": -52.0,
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"resting_potential_mv": -52.0,
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"synaptic_delay_ms": 1.8,
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"synaptic_tau_ms": 5.0,
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"threshold_mv": -45.0,
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"w_syn_mv_per_anatomical_synapse": 0.275
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},
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"phase4b_checksum_verification": "PASS",
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"phase4b_checksums_sha256": "8f09b27d60fdde213d4038176169127bbca16d4da5bbc85d3bf1ea1755a9de76",
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"phase4b_manifest_sha256": "d930b92524d494937e11bd2dbfe50ac31d924daf8140d80ccd17fb2ad2d0b09a",
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"reason": "MaleCNS v1.0 transmitter inventory includes histamine and differs from the original dataset/inventory",
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"remote_model_directory_is_git_repository": false,
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"sign_policy": {
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"neurotransmitter_sign": {
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"acetylcholine": 1,
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"dopamine": 1,
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"gaba": -1,
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"glutamate": -1,
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"histamine": -1,
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"octopamine": 1,
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"serotonin": 1
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},
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"unclear_sign": 0,
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"unknown_sign": 0,
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"unmapped_policy": "error"
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},
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"source_phase": "Phase 4B PASS"
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}
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