Digital Drosophila Archive
116 lines
4.5 KiB
YAML
116 lines
4.5 KiB
YAML
phase: 4E
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names:
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reference: MaleCNS-LIF-reference-v1
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runtime: MaleCNS-LIF-runtime-v1
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io_api: MaleCNS-BrainIO-v1
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candidate: MaleCNS-VisualAdapter-v2-candidate
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paths:
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connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
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model_root: /data/digital-drosophila/models/male-cns-lif
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reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
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runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
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io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
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phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
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phase4d_root: /data/digital-drosophila/experiments/phase4d-io
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experiment_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
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candidate_root: /data/digital-drosophila/models/male-cns-lif/visual-interface-v2
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device:
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required_name_substring: RTX 4090
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launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
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model:
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dt_ms: 0.1
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membrane_tau_ms: 20.0
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synaptic_tau_ms: 5.0
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refractory_ms: 2.2
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resting_potential_mv: -52.0
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reset_potential_mv: -52.0
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threshold_mv: -45.0
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synaptic_delay_ms: 1.8
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w_syn_mv_per_anatomical_synapse: 0.275
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sign_policy:
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neurotransmitter_sign:
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acetylcholine: 1
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gaba: -1
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glutamate: -1
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histamine: -1
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dopamine: 1
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octopamine: 1
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serotonin: 1
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unknown_sign: 0
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unclear_sign: 0
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visual_populations:
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reference-photoreceptor: {source: hierarchy, value: visual_sensory, interface_kind: biological-reference, stimulation_mode: spike_injection}
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engineering-first-order: {source: hierarchy, value: first_order, interface_kind: engineering, stimulation_mode: external_synaptic_drive}
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engineering-second-order: {source: hierarchy, value: second_order, interface_kind: engineering, stimulation_mode: external_synaptic_drive}
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engineering-higher-visual: {source: hierarchy, value: higher_visual, interface_kind: engineering, stimulation_mode: external_synaptic_drive}
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engineering-visual-projection: {source: metadata-expression, field: annotation_superclass, values: [visual_projection, visual_projection_tbc], interface_kind: engineering, stimulation_mode: external_synaptic_drive}
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calibration:
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seed: 45000
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trial_duration_ms: 100.0
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chunk_ms: 10.0
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fixed_rate_hz: 50.0
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fixed_sparsity_percent: 5.0
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amplitude_multiples: [0.25, 0.5, 1, 2, 4, 8, 16]
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extended_amplitude_multiples: [32, 64]
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rate_hz: [10, 25, 50, 100, 150, 200]
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sparsity_percent: [0.1, 0.5, 1, 5, 10, 25, 50, 100]
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latency_windows_ms: [5, 10, 20, 30, 50, 100, 200]
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deterministic_repeats: 2
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runaway:
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active_fraction_gte: 0.80
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mean_firing_rate_hz_gte: 100.0
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peak_step_fraction_gte: 0.10
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propagation_success:
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require_output_active: true
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require_non_target_active: true
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minimum_graph_hops: 2
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patterns:
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# Separability uses the selected propagating condition's sparsity. This is
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# retained only as a fallback if that condition has no sparsity field.
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sparse_percent: 5.0
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dense_percent: 25.0
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moving_segments: 5
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trial_duration_ms: 100.0
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seeds: [45101, 45102, 45103]
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continuous:
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biological_duration_ms: 1000.0
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periods_ms: [10, 20, 50, 100]
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sequence: [sparse-A, sparse-B, sparse-A, moving, zero, dense]
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seed: 45200
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readout:
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bins_ms: [1, 5, 10, 20, 50]
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regression:
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float_absolute_tolerance: 0.00390625
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reference_trials:
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- {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
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- {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
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- {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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candidate_selection:
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rule: "gateway iff multi-hop propagation reaches descending or motor output and is non-runaway; rank by lowest amplitude multiple, then lowest min output hops, then hierarchy order. Formal adapter-v2 eligibility additionally requires deterministic nonzero output separability and matched-input-count validation"
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hierarchy_order: [engineering-first-order, engineering-second-order, engineering-higher-visual, engineering-visual-projection]
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prohibitions:
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connectome_changes: false
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raw_weight_changes: false
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lif_semantics_changes: false
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transmitter_sign_changes: false
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training: false
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reinforcement_learning: false
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game_integration: false
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web_server: false
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three_d_frontend: false
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phase4f: false
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