Digital Drosophila Archive
116 lines
4.3 KiB
YAML
116 lines
4.3 KiB
YAML
phase: 4F
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names:
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reference: MaleCNS-LIF-reference-v1
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runtime: MaleCNS-LIF-runtime-v1
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io_api: MaleCNS-BrainIO-v1
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activity_stream: MaleCNS-ActivityStream-v1
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encoder: MaleCNS-VisualEncoder-v1
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candidate: MaleCNS-VisualEncoder-v1-candidate
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paths:
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connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
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model_root: /data/digital-drosophila/models/male-cns-lif
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reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
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runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
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io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
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phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
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phase4d_root: /data/digital-drosophila/experiments/phase4d-io
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phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
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experiment_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
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encoder_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
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external_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision/external-resources
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device:
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required_name_substring: RTX 4090
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launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
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model:
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dt_ms: 0.1
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membrane_tau_ms: 20.0
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synaptic_tau_ms: 5.0
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refractory_ms: 2.2
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resting_potential_mv: -52.0
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reset_potential_mv: -52.0
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threshold_mv: -45.0
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synaptic_delay_ms: 1.8
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w_syn_mv_per_anatomical_synapse: 0.275
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sign_policy:
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neurotransmitter_sign: {acetylcholine: 1, gaba: -1, glutamate: -1, dopamine: 1, octopamine: 1, serotonin: 1, histamine: -1}
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unknown_sign: 0
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unclear_sign: 0
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official_resources:
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visualpathways_commit: 23f6ac131529b5f56894c6eeb9b88b17894fc00d
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celltype_explorer_commit: 789cc6c105798ce2fd70ba85dab394f90899616b
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flyvis_commit: 92b3845cc426dd309a1a0e1b3890156c42e14021
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retinotopy_tbar_url: https://storage.googleapis.com/flyem-male-cns/auxiliary-data/retinotopy-tbars/retinotopy_tbar_olr-2026-06-26.precomputed
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paper_doi: 10.1016/j.cell.2026.08.014
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encoder:
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trial_duration_ms: 100.0
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temporal_segments: 5
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targets_per_segment: 460
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poisson_rate_hz: 50.0
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external_drive_mv: 8.8
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seeds: [46101, 46102, 46103]
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flyvis_bridge:
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geometry: regular axial hex lattice sized from official MaleCNS unique eye columns
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coordinate_equations: exact public flyvis.utils.hex_utils get_hex_coords/hex_to_pixel default convention
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channel_weights: {luminance: 1.0, on_change: 1.0, off_change: 1.0, temporal_motion: 0.5, horizontal_motion_tendency: 1.0, vertical_motion_tendency: 1.0}
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target_expression: annotation_superclass in [visual_projection, visual_projection_tbc] with retinotopic coordinate
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patterns:
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- full-field
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- left-spot
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- right-spot
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- upper-spot
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- lower-spot
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- left-to-right
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- right-to-left
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- up-to-down
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- down-to-up
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- looming
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- sparse-moving-object
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- static-object
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matched_pairs:
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- [left-spot, right-spot]
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- [upper-spot, lower-spot]
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- [left-to-right, right-to-left]
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- [up-to-down, down-to-up]
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- [looming, left-to-right]
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- [sparse-moving-object, static-object]
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runaway: {active_fraction_gte: 0.80, mean_firing_rate_hz_gte: 100.0, peak_step_fraction_gte: 0.10}
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success_gate:
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minimum_separable_matched_pairs_in_descending_or_motor: 2
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minimum_graph_hops: 2
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maximum_output_latency_ms: 100.0
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require_non_runaway: true
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require_frozen_regression: true
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readout:
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bins_ms: [1, 5, 10, 20, 50]
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regression:
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float_absolute_tolerance: 0.00390625
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reference_trials:
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- {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
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- {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
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- {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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prohibitions:
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connectome_changes: false
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raw_weight_changes: false
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lif_semantics_changes: false
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transmitter_sign_changes: false
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brain_gain_changes: false
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training: false
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reinforcement_learning: false
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game_integration: false
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action_decoder: false
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web_server: false
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three_d_frontend: false
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phase4g: false
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