Digital Drosophila Archive
102 lines
3.6 KiB
YAML
102 lines
3.6 KiB
YAML
phase: 4K
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name: MaleCNS-KC-recruitment-MBON-causal-audit-v1
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paths:
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connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
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dataset_root: /data/digital-drosophila/datasets/male-cns-v1.0
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model_root: /data/digital-drosophila/models/male-cns-lif
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phase4k_model_root: /data/digital-drosophila/models/male-cns-lif/kc-recruitment-audit-v1
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experiment_root: /data/digital-drosophila/experiments/phase4k-kc-recruitment-audit
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reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
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runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
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io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
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phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
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phase4d_root: /data/digital-drosophila/experiments/phase4d-io
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phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
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phase4f_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
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phase4f_model_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
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phase4g_root: /data/digital-drosophila/experiments/phase4g-frozen-interface
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phase4g_model_root: /data/digital-drosophila/models/male-cns-lif/frozen-interface-v1
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phase4g_learned_root: /data/digital-drosophila/models/learned/phase4g
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phase4h_root: /data/digital-drosophila/experiments/phase4h-dopamine-plasticity
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phase4h_model_root: /data/digital-drosophila/models/male-cns-lif/dopamine-plasticity-v1
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phase4h_learned_root: /data/digital-drosophila/models/learned/phase4h
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phase4i_root: /data/digital-drosophila/experiments/phase4i-mb-mechanistic-validation
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phase4i_model_root: /data/digital-drosophila/models/male-cns-lif/mb-mechanistic-v1
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phase4j_root: /data/digital-drosophila/experiments/phase4j-mb-physiology-repair
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phase4j_model_root: /data/digital-drosophila/models/male-cns-lif/mb-physiology-v1
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names:
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reference: MaleCNS-LIF-reference-v1
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runtime: MaleCNS-LIF-runtime-v1
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model:
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dt_ms: 0.1
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membrane_tau_ms: 20.0
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synaptic_tau_ms: 5.0
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refractory_ms: 2.2
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resting_potential_mv: -52.0
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reset_potential_mv: -52.0
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threshold_mv: -45.0
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synaptic_delay_ms: 1.8
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w_syn_mv_per_anatomical_synapse: 0.275
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sign_policy:
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neurotransmitter_sign: {acetylcholine: 1, gaba: -1, glutamate: -1, dopamine: 1, octopamine: 1, serotonin: 1, histamine: -1}
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unknown_sign: 0
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unclear_sign: 0
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readout:
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bins_ms: [1, 5, 10, 20, 50, 100]
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device:
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required_name_substring: RTX 4090
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launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
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expected_graph:
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neurons: 166700
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directed_edges: 25582938
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synaptic_contact_weight_sum: 124177617
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phase4h_plastic_candidate_edges: 14232
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plastic_mask_edges: 14232
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apl_overlay:
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name: APL-Graded-Inhibition-v1
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tau_ms: 20.0
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gain: 0.01
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normalization: 1.0
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immutable_phase4j_parameters: true
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direct_kc:
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target_compartment_verbatim: "y5B'2a"
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matched_dan_type: PAM15
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pulse_times_ms: [10.0, 30.0, 50.0, 70.0, 90.0]
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dan_time_ms: 90.0
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duration_ms: 120.0
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trace_seed: 50201
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evaluation_seed: 50301
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olfactory:
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rate_hz: 50.0
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duration_ms: 100.0
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seed: 50101
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targets_per_cs: 64
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sensitivity:
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depression_fractions: [0.0, 0.01, 0.05, 0.10, 0.25, 0.50]
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evaluation_seeds: [50301, 50302, 50303, 50304, 50305]
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functional_change_definition: any_MBON_spike_count_or_first_latency_change
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causal_attribution:
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rule: dominant_positive_synaptic_arrival_with_runtime_g_decay
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exact_delay_steps: 18
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shortest_static_path_forbidden: true
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prohibitions:
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training: false
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modify_eta_or_eligibility_v2: false
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expand_plastic_mask: false
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modify_threshold_or_gain: false
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save_sensitivity_as_learned_model: false
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decoder_classifier_rl_game_visual: false
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