qishizhe/digital-drosophila
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
Files
7f341d7ffbacc4b46bca74e5f570f7f2e8108ac0
digital-drosophila/models/male-cns-lif
T
History
Digital Drosophila Archive 80aeb2093d Bind runtime array closure to exact frozen worker inputs
2026-09-30 21:06:22 +08:00
..
apl-pn-scope-audit-v1
Audit APL PN scope and localize official synaptic contacts without changing frozen dynamics
2026-09-29 23:58:05 +08:00
apl-timing-lab-v1
Seal Phase 4AJ fixed APL timing hypothesis audit
2026-09-30 12:08:25 +08:00
apl-timing-validation-v1
Seal Phase 4AK frozen D18 independent validation
2026-09-30 13:18:18 +08:00
author-apl-lab-v1
Seal Phase 4AG author-APL audit and fixed CAL failure
2026-09-30 09:26:21 +08:00
author-apl-lab-v2
Seal Phase 4AG author-APL audit and fixed CAL failure
2026-09-30 09:26:21 +08:00
author-fullgraph-lab-v1
Seal Phase4AF exact short fullgraph author GPU gate and APL integration audit
2026-09-30 08:14:16 +08:00
author-runtime-lab-v1
Seal Phase4AE same-precision GPU numerical gate and audit limits
2026-09-30 07:50:57 +08:00
author-semantics-lab-v1
Validate isolated author LIF semantics without changing frozen models
2026-09-30 07:23:09 +08:00
conditioning-execution-v1
Add bounded same-state update validation and functional gates
2026-09-30 19:49:02 +08:00
conditioning-interface-v2
Add isolated Phase 4AP interface coordinator and negative tests
2026-09-30 18:19:04 +08:00
credit-assignment-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
credit-v3
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
csus-audit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
deterministic-runtime-v2
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
dopamine-plasticity-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
dpm-hypothesis-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
frozen-interface-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
io-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
kc-drive-audit-v1
Seal Phase 4AH conditional KC drive audit and source accounting
2026-09-30 09:59:18 +08:00
kc-recruitment-audit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
kcmbon-efficacy-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
late-kc-audit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
lif-semantics-audit-v1
Audit frozen LIF semantics and real recurrent motifs without learning changes
2026-09-30 01:00:16 +08:00
mb-credit-transfer-audit-v1
Audit fixed D18 credit and conditional MBON transfer (Phase 4AL)
2026-09-30 13:58:39 +08:00
mb-mechanistic-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
mb-physiology-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
normal-conditioning-v1
Bind runtime array closure to exact frozen worker inputs
2026-09-30 21:06:22 +08:00
odor-timing-generalization-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
olfactory-conditioning-lab-v1
Add bounded two-epoch conditioning interface and exact controls
2026-09-30 17:36:27 +08:00
olfactory-grounding-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
pn-feedback-audit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
pn-recruitment-audit-v1
Audit conditional PN recruitment and graded APL source timing
2026-09-30 10:45:48 +08:00
reference-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
runtime-credit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
runtime-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
terminal-scope-diagnostic-v1
Audit calyx-specific PN contact scope without changing frozen baseline
2026-09-30 00:27:22 +08:00
timing-audit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
timing-credit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
timing-stability-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
transmitter-audit-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
visual-encoder-v1
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
visual-interface-v2
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
wholebrain-plastic-interface-v1
Seal Phase 4AM whole-brain plastic interface audit without learning claim
2026-09-30 16:11:14 +08:00
baseline.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
brain_runtime.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4a.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4b.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4b.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4c_ext.cpp
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4c_ext.cu
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4c.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4c.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4d.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4d.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4h_audit.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4h.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4h.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4i.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4i.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4j.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4j.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4k.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4k.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4l_finalize.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4l.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4l.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4m_finalize.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4m_performance.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4m.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4m.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_alldan.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_control_whole.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_controls.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_events.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_finalize.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_finish.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_paths.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n_preflight.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n.py
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
phase4n.yaml
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
README.md
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00
requirements.txt
Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
2026-09-29 03:38:32 +08:00

README.md

MaleCNS LIF Phase 4A

Auditable, single-RTX-4090 whole-connectome LIF baseline. It consumes only the validated Phase 3B neuron-only products and never writes to the dataset tree.

Run with the exact GPU UUID to prevent accidental V100 or mixed-GPU use:

CUDA_VISIBLE_DEVICES=GPU-79f3a85d-adce-7833-7003-6488140ca596 \
  .venv/bin/python phase4a.py \
  --config /data/digital-drosophila/experiments/phase4a-baseline/config/baseline.yaml

The raw int64 synapse-count array remains read-only. The configured transform creates a separate signed float32 effective-weight array. Spike output is a sparse Parquet event table, never a dense time-by-neuron matrix.

The baseline parameters are FlyWire-inspired modeling defaults, not MaleCNS single-cell measurements. Synthetic drive amplitudes are deterministic smoke-test inputs and are not a biological calibration.

Reference in New Issue View Git Blame Copy Permalink