Digital Drosophila Archive
188 lines
5.6 KiB
JSON
188 lines
5.6 KiB
JSON
{
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"neurons": 166700,
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"groups": {
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"KC": 4064,
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"APL": 2,
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"ALPN": 686,
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"MBON": 97,
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"anatomical_DAN": 340,
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"dopamine_annotation_only": 52,
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"other": 160143,
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"unclassified": 1316
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},
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"group_order": [
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"KC",
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"APL",
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"ALPN",
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"MBON",
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"anatomical_DAN",
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"dopamine_annotation_only",
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"other",
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"unclassified"
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],
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"all_neurons_assigned_once": true,
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"labels_index": "global neuron_idx, identical to canonical row index",
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"identity_conflicts_present": false,
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"pass_all": true,
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"pass_all_scope": "schema, complete disjoint accounting and no conflicting exact identities; not biological validation",
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"flags": {
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"annotation_DPM": 2,
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"metadata_dopamine": 392,
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"annotation_DAN": 340,
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"identity_conflict": 0,
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"multiple_exact_group_hits": 0,
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"no_anatomical_annotation": 1316,
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"DAN_name_prefix_without_DAN_class": 0,
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"metadata_dopamine_not_annotation_DAN": 54,
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"annotation_DAN_not_metadata_dopamine": 2,
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"has_raw_ground_truth": 85484
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},
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"flag_counts_by_group": {
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"annotation_DPM": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 0,
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"dopamine_annotation_only": 0,
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"other": 2,
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"unclassified": 0
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},
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"metadata_dopamine": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 338,
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"dopamine_annotation_only": 52,
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"other": 2,
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"unclassified": 0
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},
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"annotation_DAN": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 340,
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"dopamine_annotation_only": 0,
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"other": 0,
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"unclassified": 0
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},
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"identity_conflict": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 0,
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"dopamine_annotation_only": 0,
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"other": 0,
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"unclassified": 0
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},
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"multiple_exact_group_hits": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 0,
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"dopamine_annotation_only": 0,
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"other": 0,
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"unclassified": 0
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},
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"no_anatomical_annotation": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 0,
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"dopamine_annotation_only": 0,
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"other": 0,
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"unclassified": 1316
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},
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"DAN_name_prefix_without_DAN_class": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 0,
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"dopamine_annotation_only": 0,
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"other": 0,
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"unclassified": 0
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},
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"metadata_dopamine_not_annotation_DAN": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 0,
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"dopamine_annotation_only": 52,
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"other": 2,
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"unclassified": 0
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},
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"annotation_DAN_not_metadata_dopamine": {
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"KC": 0,
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"APL": 0,
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"ALPN": 0,
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"MBON": 0,
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"anatomical_DAN": 2,
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"dopamine_annotation_only": 0,
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"other": 0,
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"unclassified": 0
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},
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"has_raw_ground_truth": {
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"KC": 0,
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"APL": 2,
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"ALPN": 573,
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"MBON": 65,
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"anatomical_DAN": 338,
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"dopamine_annotation_only": 42,
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"other": 84464,
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"unclassified": 0
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}
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},
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"DPM_neuron_idx": [
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1618,
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2403
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],
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"identity_conflict_neuron_idx": [],
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"uncertain_DAN_prefix_neuron_idx": [],
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"definitions": {
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"KC": "annotation_class exactly Kenyon_Cell",
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"APL": "annotation_type exactly APL",
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"ALPN": "annotation_class exactly ALPN; annotation_class olfactory is NOT included",
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"MBON": "annotation_class exactly MBON",
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"anatomical_DAN": "annotation_class exactly DAN, no exact identity conflict; not inferred from NT or PAM/PPL1 prefix",
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"dopamine_annotation_only": "normalized neurotransmitter=dopamine, no named exact group, no DPM; transmitter-evidence diagnostic, NOT DAN",
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"other": "remaining annotated neurons, explicitly including non-conflicting annotation_type DPM",
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"unclassified": "conflicting exact identity, no anatomical class/type evidence, or only uncertain DAN-name hint without class/NT evidence"
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},
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"uncertainty_policy": {
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"explicit_unknown_tokens_casefolded": [
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"",
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"unknown",
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"unclear",
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"unclassified"
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],
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"PAM_PPL1_DAN_prefix_never_assigns_identity": true,
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"transmitter_role_and_anatomical_identity_are_separate": true,
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"DPM_retained_as_other_with_explicit_flag": true,
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"missing_ground_truth_is_not_filled_or_guessed": true,
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"other_does_not_mean_known_function": true
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},
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"provenance": {
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"metadata_path_contract": "context.META; caller must verify its preregistered SHA-256 before loading",
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"metadata_expected_sha256_from_AG_r2": "922af16846a065c3dbfca7c11146b83ca217fcbd7392edc745f444a04eae8c63",
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"frozen_rules_path": "/data/digital-drosophila/models/male-cns-lif/transmitter-audit-v1/transmitter_roles_v1.py",
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"frozen_rules_sha256": "76ba0cae6c5db417ec030456797f7935216c6877bd339d5e435133a0061e3930",
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"frozen_sidecar_path": "/data/digital-drosophila/experiments/phase4x-transmitter-provenance/roles/neuron-evidence-axes.parquet",
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"frozen_sidecar_sha256": "8b51d12d84d66cdca66aeb7d052a24e520b9c28f462bd6bf87f37dda85c33284",
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"frozen_MB_DAN_mapping_path": "/data/digital-drosophila/experiments/phase4h-dopamine-plasticity/mappings/dan-to-mbon-confirmed.parquet",
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"frozen_MB_DAN_mapping_used_to_assign_identity": false,
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"file_hash_verified_by_this_pure_function": false,
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"differences_from_4X_reporting": "ALPN separated from broader olfactory class; DPM grouped other with flag; absent/conflicting identity explicitly unclassified"
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},
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"source_graph_changed": false,
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"simulation_executed": false,
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"heldout_dynamic_access": false,
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"reward_or_valence_inferred": false
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}
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