Digital Drosophila Archive
110 lines
3.7 KiB
YAML
110 lines
3.7 KiB
YAML
phase: 4I
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name: MaleCNS-MB-mechanistic-validation-v1
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paths:
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connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
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model_root: /data/digital-drosophila/models/male-cns-lif
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phase4i_model_root: /data/digital-drosophila/models/male-cns-lif/mb-mechanistic-v1
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experiment_root: /data/digital-drosophila/experiments/phase4i-mb-mechanistic-validation
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reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
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runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
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io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
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phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
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phase4d_root: /data/digital-drosophila/experiments/phase4d-io
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phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
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phase4f_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
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phase4f_model_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
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phase4g_root: /data/digital-drosophila/experiments/phase4g-frozen-interface
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phase4g_model_root: /data/digital-drosophila/models/male-cns-lif/frozen-interface-v1
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phase4g_learned_root: /data/digital-drosophila/models/learned/phase4g
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phase4h_root: /data/digital-drosophila/experiments/phase4h-dopamine-plasticity
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phase4h_model_root: /data/digital-drosophila/models/male-cns-lif/dopamine-plasticity-v1
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phase4h_learned_root: /data/digital-drosophila/models/learned/phase4h
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expected_graph:
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neurons: 166700
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directed_edges: 25582938
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synaptic_contact_weight_sum: 124177617
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phase4h_plastic_candidate_edges: 14232
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names:
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reference: MaleCNS-LIF-reference-v1
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runtime: MaleCNS-LIF-runtime-v1
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model:
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dt_ms: 0.1
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membrane_tau_ms: 20.0
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synaptic_tau_ms: 5.0
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refractory_ms: 2.2
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resting_potential_mv: -52.0
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reset_potential_mv: -52.0
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threshold_mv: -45.0
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synaptic_delay_ms: 1.8
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w_syn_mv_per_anatomical_synapse: 0.275
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sign_policy:
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neurotransmitter_sign: {acetylcholine: 1, gaba: -1, glutamate: -1, dopamine: 1, octopamine: 1, serotonin: 1, histamine: -1}
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unknown_sign: 0
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unclear_sign: 0
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readout:
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bins_ms: [1, 5, 10, 20, 50, 100]
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device:
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required_name_substring: RTX 4090
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launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
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olfactory_audit:
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seeds: [48101, 48102, 48103, 48104, 48105]
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rate_hz: 50.0
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duration_ms: 100.0
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targets_per_identity: 64
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temporal_bin_ms: 10.0
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consensus_seed_count: 3
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separability_gate:
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maximum_mean_active_jaccard: 0.8
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minimum_pair_cosine_distance: 0.01
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majority_seeds: 3
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between_exceeds_within_sigma: 2.0
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direct_kc:
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ensemble_size: 64
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target_compartment_verbatim: "y5B'2a"
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matched_dan_type: PAM15
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unrelated_compartment_verbatim: "y2a'1"
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unrelated_dan_type: PPL103
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pulse_times_ms: [10.0, 30.0, 50.0, 70.0, 90.0]
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evaluation_duration_ms: 120.0
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conditioning_trials: 3
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train_seeds: [49001, 49002, 49003, 49004, 49005]
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evaluation_seeds: [49101, 49102, 49103, 49104, 49105]
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plasticity:
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overlay_equation: effective_weight = base_weight + plastic_delta
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eta_effective_mv: 0.00275
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eligibility_tau_ms: 1000.0
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polarity: -1
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max_fractional_depression_per_edge: 0.25
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negative_delay_behavior_under_phase4h_rule: full_eligibility
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timing:
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delta_t_ms: [-1000, -500, -250, -100, -50, 0, 50, 100, 250, 500, 1000]
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common_kc_time_ms: 1000.0
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trial_duration_ms: 2100.0
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seed: 49201
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far_to_coincident_nonspecific_ratio: 0.1
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controls:
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conditions: [A-matched-DAN, A-D-zero, A-unrelated-DAN, B-matched-DAN, random-KC-DAN, frozen-no-plasticity]
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prohibitions:
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modify_base_csr: false
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modify_w_syn: false
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modify_transmitter_sign: false
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modify_lif_parameters: false
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expand_plastic_mask: false
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tune_eta_or_polarity: false
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brain_backpropagation: false
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reinforcement_learning: false
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visual_or_game_integration: false
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