Digital Drosophila Archive
65 lines
2.7 KiB
YAML
65 lines
2.7 KiB
YAML
phase: 4H
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execution:
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mode: two-stage
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stage1_only_entrypoint: phase4h_audit.py
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require_stage1_pass_before_conditioning: true
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paths:
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connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
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model_root: /data/digital-drosophila/models/male-cns-lif/dopamine-plasticity-v1
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learned_root: /data/digital-drosophila/models/learned/phase4h
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experiment_root: /data/digital-drosophila/experiments/phase4h-dopamine-plasticity
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reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
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runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
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io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
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phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
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phase4d_root: /data/digital-drosophila/experiments/phase4d-io
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phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
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phase4f_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
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phase4f_model_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
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phase4g_root: /data/digital-drosophila/experiments/phase4g-frozen-interface
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phase4g_model_root: /data/digital-drosophila/models/male-cns-lif/frozen-interface-v1
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phase4g_learned_root: /data/digital-drosophila/models/learned/phase4g
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expected_graph:
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neurons: 166700
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directed_edges: 25582938
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synaptic_contact_weight_sum: 124177617
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audit:
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exact_class_values:
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KC: Kenyon_Cell
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MBON: MBON
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DAN: DAN
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pam_type_prefix: PAM
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ppl1_type_prefix: PPL1
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compartment_source_field: annotation_instance
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compartment_parser: single_parenthesized_substring_verbatim
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require_exact_compartment_string_match: true
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candidate_requires_actual_kc_mbon_edge: true
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candidate_requires_actual_dan_mbon_edge: true
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candidate_requires_exact_dan_mbon_compartment_match: true
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do_not_infer_missing_compartment_from_type: true
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plasticity:
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base_connectome_mode: read_only
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overlay_equation: effective_weight = base_weight + plastic_delta
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rule: delta_w = polarity_compartment * eta * D_compartment(t) * eligibility_ij(t)
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first_version_rule_family: compartment_specific_dopamine_gated_anti_hebbian_depression
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default_confirmed_compartment_polarity: -1
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unknown_compartment_policy: exclude_from_plastic_mask
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pam_ppl1_cluster_valence_policy: prohibited
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reward_interface_interpretation: artificial_unconditioned_signal_not_dopamine_concentration
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polarity_provenance:
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- https://pubmed.ncbi.nlm.nih.gov/26637800/
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- https://pubmed.ncbi.nlm.nih.gov/25535793/
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- https://www.nature.com/articles/s41586-024-07819-w
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prohibitions:
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modify_phase1_to_phase4g: false
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conditioning_during_stage1: false
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weight_update_during_stage1: false
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infer_unknown_mapping: false
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train_base_brain: false
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