Digital Drosophila Archive
104 lines
3.1 KiB
YAML
104 lines
3.1 KiB
YAML
phase: 4C
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names:
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reference: MaleCNS-LIF-reference-v1
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runtime: MaleCNS-LIF-runtime-v1
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description: Shiu-like LIF dynamics adapted to MaleCNS v1.0
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paths:
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connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
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phase4b_root: /data/digital-drosophila/experiments/phase4b-dynamics
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model_root: /data/digital-drosophila/models/male-cns-lif
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experiment_root: /data/digital-drosophila/experiments/phase4c-runtime
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expected_graph:
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neurons: 166700
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directed_edges: 25582938
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synaptic_contact_weight_sum: 124177617
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isolated_neurons: 217
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self_loops: 101
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device:
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required_name_substring: RTX 4090
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launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
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mixed_multi_gpu: false
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model:
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dt_ms: 0.1
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membrane_tau_ms: 20.0
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synaptic_tau_ms: 5.0
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refractory_ms: 2.2
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resting_potential_mv: -52.0
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reset_potential_mv: -52.0
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threshold_mv: -45.0
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synaptic_delay_ms: 1.8
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w_syn_mv_per_anatomical_synapse: 0.275
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integration: forward_euler
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refractory_g_policy: g continues to decay and receive exact delayed events while v is clamped at V_reset
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sign_policy:
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neurotransmitter_sign:
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acetylcholine: 1
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gaba: -1
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glutamate: -1
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histamine: -1
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dopamine: 1
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octopamine: 1
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serotonin: 1
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unknown_sign: 0
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unclear_sign: 0
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unmapped_policy: error
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sensory_populations:
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visual:
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expression: annotation_class == 'visual'
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mechanosensory:
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expression: annotation_class in {'mechanosensory','mechanosensory_tactile','mechanosensory_proprioceptive'} and annotation_subclass != 'auditory'
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olfactory:
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expression: annotation_class == 'olfactory'
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gustatory:
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expression: annotation_class == 'gustatory'
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auditory:
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expression: annotation_subclass == 'auditory'
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reference_trials:
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- {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
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- {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
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- {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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- {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
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visual_dynamics:
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duration_ms: 100.0
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rate_hz: 50
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seed: 43100
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tonic_histamine_baseline_hz: 50
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modulation_rate_hz: 10
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modulation_start_ms: 50.0
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benchmark:
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population: auditory
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rate_hz: 10
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seed: 43200
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durations_ms: [10.0, 100.0, 1000.0, 10000.0]
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gpu_sample_interval_seconds: 0.1
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backends: [eager, hybrid-exact, compile-default, compile-reduce-overhead, cudagraph-custom-state, custom-cuda]
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warmup_ms: 10.0
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regression:
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require_exact_spike_events: true
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float_absolute_tolerance: 1.0e-5
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reject_on_spike_divergence: true
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reproducibility:
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global_seed: 43000
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local_repository_commit: d826733f1c620a2ad0b096c846b9b8e9eb3ac0fa
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deterministic_forced_inputs: true
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source_phase: Phase 4B PASS
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prohibitions:
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alter_connectome: false
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alter_raw_synapse_counts: false
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alter_transmitter_signs: false
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train_weights: false
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game_rl_web_3d: false
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