Seal Phase 4AG author-APL audit and fixed CAL failure

tools/publish_phase4ag_r2.py

@@ -0,0 +1,34 @@
+"""Publish small sealed AG evidence without claiming bulk remote backup."""
+import json
+from pathlib import Path
+import shutil
+import sys
+
+ROOT=Path('/data/digital-drosophila')
+MODEL=ROOT/'models/male-cns-lif/author-apl-lab-v2'
+EXP=ROOT/'experiments/phase4ag-author-apl-r2'
+sys.path.insert(0,str(MODEL))
+from context import save,digest,check
+sys.path.insert(0,str(ROOT/'models/male-cns-lif/terminal-scope-diagnostic-v1'))
+from diagnostic import manifest_check
+
+
+def main():
+    check();verification={str(p.relative_to(ROOT)):manifest_check(p,digest) for p in (MODEL,EXP)}
+    assert all(v['pass'] for v in verification.values())
+    registry=ROOT/'registry/phase4ag-author-apl-r2';registry.mkdir(exist_ok=False);records=[]
+    manifest=json.loads((EXP/'manifest.json').read_text())
+    for p in [EXP/r['path'] for r in manifest['files']]+[EXP/'manifest.json',EXP/'checksums.sha256']:
+        if p.stat().st_size>4*1024**2 or p.suffix not in ('.json','.csv','.md','.sha256'):continue
+        if p.name in ('completeness.csv','requests.csv'):continue
+        dst=registry/'evidence'/p.relative_to(EXP);dst.parent.mkdir(parents=True,exist_ok=True)
+        with p.open('rb') as src,dst.open('xb') as out:shutil.copyfileobj(src,out)
+        assert digest(dst)==digest(p)
+        records.append(dict(source=str(p.relative_to(ROOT)),copy=str(dst.relative_to(registry)),sha256=digest(p),bytes=p.stat().st_size))
+    save(registry/'evidence-index.json',records);save(registry/'seal-verification.json',verification)
+    target=ROOT/'docs/progress/phase4ag-author-apl-r2.md'
+    with (EXP/'REPORT.md').open('rb') as src,target.open('xb') as out:shutil.copyfileobj(src,out)
+    print(json.dumps(dict(copied=len(records),verification=verification),ensure_ascii=False))
+
+
+if __name__=='__main__':main()