Seal Phase 4AG author-APL audit and fixed CAL failure
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Digital Drosophila Archive
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{
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"timestamp_utc": "2026-09-30T00:54:15.341675+00:00",
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"sources": {
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"PROTOCOL.md": "49f53924f758317bfcbd2b53cab9b8b785121eb99f3234a8343c9b483c5701d8",
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"calibration.py": "edb9cb2d890471fd07afd88c959ef3540b0cd40af490fac3f26396b5e7f5bf9c",
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"compare.py": "6e1616b086f667fa4e4b5087f500f8080281977ca9922e7b055acfddd2003bd5",
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"config.json": "a8bafb9deec49d918976f2836d977ef9f13c26a6fb7f70e015879e29cf986c9a",
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"context.py": "274eb13ccf38dbbc5c7f14d9d642130eb0f69072d91a090f208c30c27f87dd2b",
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"finalize.py": "b6e3c67e668a971b544df32d76435ab5e537061b9fc2e8d9dedb5d2a726f5782",
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"gpu_apl.py": "69f5d893f47dafff4ef7c3186c3df0b9014666b32c8f4e943b57016bec92b18a",
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"legacy_apl_worker.py": "21ceec65fe42581dc55872010e0025d660e80358905f1cf4df1dadf341a3b291",
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"oracle_apl.py": "357a7d3debb5abc34a8714c0233b456547a154d9d5855d28661b4f01019a80ea",
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"prepare.py": "e9328567753e144fc315491970f7e02af13725b93f35e4d4b97f7c4c48ce3338",
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"run_case.py": "afbe6d5a37c29bda66d38c470093584130d1852e67881c681662aec3c76b33c7",
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"run_suite.py": "84c681030b0032119b5392d0c3f3c136a9c6b0d133eb548c40791a10bbbb8b63",
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"test_calibration.py": "bab3136eecbc5bb09a985d715844ee845cb72b07930ce376bfb39be33bd1845a",
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"test_protocol.py": "1a233f47943e01bbd845ac1dacdb1eec3f88c270c65a5f75bce1cf679b5de097",
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"test_python_entry.py": "0ed665f686e3499f8543e48f1712ccb4523946971cb7a0e096cf4f6d10d3bcba",
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"validate_components.py": "5cfc9a4505da6b8fb4e7d2617cdaedaa8475ed46a11ec9bdf0d4d25b1d22c2d3",
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"verify_frozen.py": "0d0e72b2f1348f6648124c8c34f75094f76fc5e1a281fbcca130a5fad2f35293"
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},
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"config": {
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"phase": "4AG-r2",
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"name": "author-apl-lab-v2",
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"execution_revision": "Preserve declared venv Python entry rather than resolving its symlink to system Python. No dynamics or inputs changed.",
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"human_authorization": "允许独立新模型分支测试动力学假设",
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"gpu_uuid": "GPU-79f3a85d-adce-7833-7003-6488140ca596",
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"neurons": 166700,
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"edges": 25582938,
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"raw_weight_sum": 124177617,
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"precision": "float64",
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"apl_precision": "float32",
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"apl": {
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"tau_ms": 20.0,
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"gain": 0.01,
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"normalization": 1.0
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},
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"hypothesis": "Author LIF plus unchanged legacy graded APL operator at end, after reset, unconditional KC g write. Mixed precision: h32 promoted to float64, then multiplied by float64 .001 SI, then subtracted. Not original author's APL model.",
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"fixtures": [
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"zero",
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"pn_pulse",
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"kc_ref_boundary",
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"two_sources",
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"arrival_collision",
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"natural_request",
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"apl_only",
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"high_fanin"
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],
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"fixture_repeats": 3,
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"calibration": {
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"split": "calibration",
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"odor_count": 6,
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"modes": [
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"physiological",
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"matched_energy"
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],
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"seeds": [
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51101,
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51102,
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51103,
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51104,
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51105
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],
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"duration_ms": 100.0,
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"median_scope": "original frozen 12-odor panel",
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"full_oracle_probes": [
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"cal-physiological-00-s51101",
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"cal-matched_energy-00-s51101"
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],
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"repeat_first_seed_each_odor": true
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},
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"gates": {
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"sparse_min_fraction": 0.03,
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"sparse_max_fraction": 0.09,
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"max_fraction_strict": 0.5,
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"min_fraction_strict": 0.0,
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"minimum_separable_odor_pairs": 3,
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"same_jaccard_gt_between": true,
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"between_euclidean_gt_within": true,
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"both_modes_required": true,
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"finite_required": true,
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"repeat_exact_required": true
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},
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"training": false,
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"heldout_dynamic_access": false,
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"candidate_generation": false,
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"output_budget_bytes": 16106127360,
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"scope": "Semantic compatibility and fixed old CAL only. Shared-APL-component closed-loop Brian oracle plus independent arithmetic audit; never claim all-component independent CPU equivalence or learning success. No parameter/input/site/window selection from results."
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},
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"inputs": [
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{
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"path": "models/male-cns-lif/author-fullgraph-lab-v1/manifest.json",
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"sha256": "ead78ed89d0daebee5281ef285bbfe9d79c69b5034830609414f7b130d3c5827"
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},
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{
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"path": "experiments/phase4af-author-fullgraph/manifest.json",
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"sha256": "0646b5fc232ee44912f1c3a60d600355f5a6d97dff7cf59fccea612d822fb899"
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},
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{
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"path": "experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
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"sha256": "bde79d95ef0097b827d5faf4d5658eafc009d8e9fcef1fddd645c953823e3f64"
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},
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{
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"path": "models/male-cns-lif/deterministic-runtime-v2/phase4p_revalidate.py",
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"sha256": "c7e693a2da70acdce4f53af5c2853e52e8333acc93f88a46a5e8083eac639346"
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},
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{
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"path": "models/male-cns-lif/olfactory-grounding-v1/phase4l.yaml",
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"sha256": "9b8bcb7e031bf9063033a1854a439a7cd0bf6730301c2d2d02ca99a76f098d6e"
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},
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{
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"path": "experiments/phase4j-mb-physiology-repair/calibration/locked-parameters.json",
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"sha256": "1894cc4b4082ba9b2d069edf87c5eccb75292aa11947ad9c48acf661037ff3e7"
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},
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{
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"path": "datasets/male-cns-v1.0/processed/neuron-only/neuron-index/unified-metadata.parquet",
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"sha256": "922af16846a065c3dbfca7c11146b83ca217fcbd7392edc745f444a04eae8c63"
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},
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{
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"path": "datasets/male-cns-v1.0/processed/neuron-only/gpu/csr-weights.int64.npy",
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"sha256": "c7ae101451dd19c47fd976bcfacbc52d67193a68ffa04c5b4d2e911cfd52d99b"
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},
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{
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"path": "models/male-cns-lif/author-runtime-lab-v1/author_ext.cpp",
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{
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{
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"path": "models/male-cns-lif/author-runtime-lab-v1/gpu_backend.py",
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"sha256": "03758d07572f4b44d272059d9308fac534268ad201b57bdd77d69fee95e67278"
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},
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{
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"path": "models/male-cns-lif/author-runtime-lab-v1/oracle_stress.py",
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{
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"path": "experiments/phase4ad-author-semantics/external-resources/model.py",
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"path": "models/male-cns-lif/author-fullgraph-lab-v1/oracle_full.py",
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},
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{
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"path": "experiments/phase4l-olfactory-grounding/odor-encoder/frozen-odor-panel.parquet",
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},
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{
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"path": "experiments/phase4l-olfactory-grounding/odor-encoder/mapped-glomerular-vectors.npz",
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"sha256": "f057563152e0fa22060080af13019f319e7f36563a775eff829bbc1929c451b0"
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{
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"path": "experiments/phase4l-olfactory-grounding/odor-encoder/selection.json",
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"sha256": "1b832becf9d08935716fe9ba5e3cd3e619e7d208dfb43c4fa197c969d095f113"
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},
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{
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"path": "experiments/phase4l-olfactory-grounding/receptor-mapping/olfactory-mapping.parquet",
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},
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{
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"path": "experiments/phase4ag-author-apl/manifest.json",
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"sha256": "4920e331efb7d0db6366ef1ef727c180a179c298834e45a9c06eb8e5bfc489d6"
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{
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"path": "models/male-cns-lif/author-apl-lab-v1/manifest.json",
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}
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],
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"before_any_trajectory": true,
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"parent_commit": "7dfe5d2d8710e6afeb2647e315368e05d7c4fd8b"
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}
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