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Seal Phase 4AG author-APL audit and fixed CAL failure

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Digital Drosophila Archive
2026-09-30 09:26:21 +08:00
parent 7dfe5d2d87
commit ff91a74193
593 changed files with 67671 additions and 17 deletions
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registry/phase4ag-author-apl/evidence/protocol/calibration-cases.json
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registry/phase4ag-author-apl/evidence/protocol/encoder-audit.json
+19
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{
"panel_count": 12,
"cal_count": 6,
"median_mapped_response_sum": 2.556107997894287,
"target_rng_column_order": "Original pn_drive, no sorting before torch.rand",
"seeds": [
51101,
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"requested_before_any_dynamics": true,
"formal_AB_run": false,
"heldout_run": false,
"torch": "2.14.0+cu130",
"numpy": "2.2.6",
"generation": "Original rates*.1/1000 float32 GPU Bernoulli, independent per-case original seed"
}
registry/phase4ag-author-apl/evidence/protocol/fixture-identities.csv
+45
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@@ -0,0 +1,45 @@
neuron_idx,body_id,annotation_class,annotation_type,neurotransmitter
30,10039,ALPN,VL2a_adPN,acetylcholine
71,10084,ALPN,DP1m_adPN,acetylcholine
112,10126,ALPN,DP1m_adPN,acetylcholine
120,10134,ALPN,VL2a_adPN,acetylcholine
189,10208,ALPN,DM1_lPN,acetylcholine
296,10321,ALPN,VL2p_adPN,acetylcholine
434,10470,ALPN,DC1_adPN,acetylcholine
484,10522,ALPN,VL2p_adPN,acetylcholine
502,10540,,APL,gaba
522,10561,ALPN,VA2_adPN,acetylcholine
530,10569,ALPN,DC1_adPN,acetylcholine
728,10786,ALPN,VC5_lvPN,acetylcholine
813,10877,ALPN,VA6_adPN,acetylcholine
904,10977,,APL,gaba
1197,11289,ALLN,lLN1_bc,acetylcholine
1381,11478,ALLN,lLN1_bc,acetylcholine
1511,11620,ALLN,lLN1_bc,acetylcholine
1590,11703,ALPN,VM1_lPN,acetylcholine
1618,11734,,DPM,dopamine
2010,12152,ALPN,DC2_adPN,acetylcholine
2160,12312,ALPN,DC3_adPN,acetylcholine
3252,13479,ALPN,DC2_adPN,acetylcholine
5693,16207,ALPN,VC5_lvPN,acetylcholine
7784,18540,Kenyon_Cell,KCg-s1,acetylcholine
10679,21778,Kenyon_Cell,KCg-s1,acetylcholine
13533,24959,Kenyon_Cell,KCg-m,acetylcholine
20721,33086,Kenyon_Cell,KCa'b'-ap2,acetylcholine
23644,36376,Kenyon_Cell,KCa'b'-ap2,acetylcholine
23943,36723,Kenyon_Cell,KCg-d,acetylcholine
27845,41131,Kenyon_Cell,KCg-m,acetylcholine
30590,44260,Kenyon_Cell,KCg-m,acetylcholine
33250,47301,Kenyon_Cell,KCa'b'-ap1,acetylcholine
33327,47391,Kenyon_Cell,KCa'b'-ap2,acetylcholine
38891,53863,Kenyon_Cell,KCab-c,acetylcholine
57446,76352,Kenyon_Cell,KCa'b'-ap2,acetylcholine
58405,77539,Kenyon_Cell,KCa'b'-ap2,acetylcholine
82235,109220,Kenyon_Cell,KCa'b'-ap2,acetylcholine
82312,109321,Kenyon_Cell,KC,acetylcholine
88824,118636,Kenyon_Cell,KCa'b'-m,acetylcholine
100135,137021,Kenyon_Cell,KCa'b'-ap2,acetylcholine
107868,153774,Kenyon_Cell,KCa'b'-m,acetylcholine
120835,214044,Kenyon_Cell,KCab-m,acetylcholine
130612,520206,Kenyon_Cell,KCg-d,acetylcholine
133666,527577,ALPN,VA6_adPN,acetylcholine
1 neuron_idx body_id annotation_class annotation_type neurotransmitter
2 30 10039 ALPN VL2a_adPN acetylcholine
3 71 10084 ALPN DP1m_adPN acetylcholine
4 112 10126 ALPN DP1m_adPN acetylcholine
5 120 10134 ALPN VL2a_adPN acetylcholine
6 189 10208 ALPN DM1_lPN acetylcholine
7 296 10321 ALPN VL2p_adPN acetylcholine
8 434 10470 ALPN DC1_adPN acetylcholine
9 484 10522 ALPN VL2p_adPN acetylcholine
10 502 10540 APL gaba
11 522 10561 ALPN VA2_adPN acetylcholine
12 530 10569 ALPN DC1_adPN acetylcholine
13 728 10786 ALPN VC5_lvPN acetylcholine
14 813 10877 ALPN VA6_adPN acetylcholine
15 904 10977 APL gaba
16 1197 11289 ALLN lLN1_bc acetylcholine
17 1381 11478 ALLN lLN1_bc acetylcholine
18 1511 11620 ALLN lLN1_bc acetylcholine
19 1590 11703 ALPN VM1_lPN acetylcholine
20 1618 11734 DPM dopamine
21 2010 12152 ALPN DC2_adPN acetylcholine
22 2160 12312 ALPN DC3_adPN acetylcholine
23 3252 13479 ALPN DC2_adPN acetylcholine
24 5693 16207 ALPN VC5_lvPN acetylcholine
25 7784 18540 Kenyon_Cell KCg-s1 acetylcholine
26 10679 21778 Kenyon_Cell KCg-s1 acetylcholine
27 13533 24959 Kenyon_Cell KCg-m acetylcholine
28 20721 33086 Kenyon_Cell KCa'b'-ap2 acetylcholine
29 23644 36376 Kenyon_Cell KCa'b'-ap2 acetylcholine
30 23943 36723 Kenyon_Cell KCg-d acetylcholine
31 27845 41131 Kenyon_Cell KCg-m acetylcholine
32 30590 44260 Kenyon_Cell KCg-m acetylcholine
33 33250 47301 Kenyon_Cell KCa'b'-ap1 acetylcholine
34 33327 47391 Kenyon_Cell KCa'b'-ap2 acetylcholine
35 38891 53863 Kenyon_Cell KCab-c acetylcholine
36 57446 76352 Kenyon_Cell KCa'b'-ap2 acetylcholine
37 58405 77539 Kenyon_Cell KCa'b'-ap2 acetylcholine
38 82235 109220 Kenyon_Cell KCa'b'-ap2 acetylcholine
39 82312 109321 Kenyon_Cell KC acetylcholine
40 88824 118636 Kenyon_Cell KCa'b'-m acetylcholine
41 100135 137021 Kenyon_Cell KCa'b'-ap2 acetylcholine
42 107868 153774 Kenyon_Cell KCa'b'-m acetylcholine
43 120835 214044 Kenyon_Cell KCab-m acetylcholine
44 130612 520206 Kenyon_Cell KCg-d acetylcholine
45 133666 527577 ALPN VA6_adPN acetylcholine
registry/phase4ag-author-apl/evidence/protocol/fixture-selection.json
+14
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@@ -0,0 +1,14 @@
{
"pn": 434,
"kc": 7784,
"pair_PN": 71,
"arrival_KCs": [
38891,
88824,
120835
],
"real_PN_KC_edge": 151354,
"nonKC_APL_target": 1618,
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registry/phase4ag-author-apl/evidence/protocol/prepared-hashes.json
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