Seal Phase 4AG author-APL audit and fixed CAL failure

2026-09-30 09:26:21 +08:00
parent 7dfe5d2d87
commit ff91a74193
593 changed files with 67671 additions and 17 deletions
@@ -0,0 +1,12 @@
+{
+  "KC_targets_in_case": 20,
+  "base_graph_files_modified": false,
+  "base_weight_raw_bytes_sha256": "41992774ca397eadc8b51d199c8ca6950567f363c5eebdeb7542f3a6ec8f2585",
+  "count": 50,
+  "effective_weights_file_sha256": "815a82e033b1f70f42595c15ad36677692521bde0befc558c34cfab624b38406",
+  "effective_weights_raw_sha256": "4f55a48a0b1e07e26b5fa132bb6a9ed87194f254ab832b4c7e9657b52cd375c6",
+  "fullgraph_required_mask_count": 5845,
+  "graded_targets": "only KC identities present in this LIF case",
+  "ordered_original_edge_id_sha256": "24009dd051cb88d5383254c72b2c6b15d7c8cb441cacb756804ddde6fac4c825",
+  "rule": "zero +0 all existing fast edges whose source GLOBAL neuron is in apl_globals; no graph edge removal"
+}
@@ -0,0 +1,17 @@
+{
+  "APL_precision": "float32 in separate science-Python process",
+  "Torch_imported_into_Brian": false,
+  "author_precision": "float64",
+  "codegen": "numpy",
+  "packages": {
+    "brian2": "2.5.1",
+    "cython": "0.29.33",
+    "numpy": "1.22.3",
+    "pandas": "1.4.3",
+    "pyarrow": "11.0.0",
+    "scipy": "1.8.1",
+    "sympy": "1.12"
+  },
+  "platform": "Linux-5.15.0-194-generic-x86_64-with-glibc2.35",
+  "python": "3.10.12 (main, Aug 31 2026, 10:18:17) [GCC 11.4.0]"
+}
@@ -0,0 +1,8 @@
+{
+  "complete": false,
+  "inputs_or_duration_adjusted": false,
+  "last_complete_tick": -1,
+  "message": "APL sidecar ended before a complete response",
+  "partial_files_preserved": true,
+  "type": "EOFError"
+}
@@ -0,0 +1,65 @@
+{
+  "ae_sha256": "32eb1c42383068ce52701d2139a376ce155ad7072cde019949f8ca2d55492409",
+  "af_sha256": "d72003d98f0f1624b12126eff50bd361c43d888f4a64d90ba9247a58976f1961",
+  "author_sha256": "fc45837d7122c6ce2a7f3f2f23c515992e4b232aadb919efabb72337fac88e4e",
+  "bundle_hashes": {
+    "apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
+    "input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
+    "kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
+    "output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
+  },
+  "candidate_trace_used_as_input": false,
+  "case_hashes": {
+    "arrays.npz": "c256234eec74752513c95d961233e7c1a7b5caa20deaa9b4913be9f539b2f1d8",
+    "requests.npz": "517b500f350b0825f7cc9c639beb62d06764de286b13e0835cb26c5f83ff106a",
+    "spec.json": "460c9cf38729075ad121e9c68fef46291320fd87321e2f48296757e8b1f0affb"
+  },
+  "coefficients_sha256": "bde79d95ef0097b827d5faf4d5658eafc009d8e9fcef1fddd645c953823e3f64",
+  "graph_hashes": {
+    "completeness.csv": "fe19419a07b379537e0f94176c6e60058d42f07d576c87e7bebf1c7a568a500f",
+    "connectivity.parquet": "5ee85c2b1befe4cde2ca5ad3ace142bb4e338a143d99d756d348d6aeaf44db9b",
+    "dst.npy": "6f50ad492013b3d14fe45c46210a68c37fb138337ae7f91eed0730f92d5cc7d6",
+    "edge_id.npy": "8b3ad7ca57738feb1495d75dadb7c7cd62890ab0b763bfb46ed217d4002c8765",
+    "nodes.npy": "2a65c268f42ecb99ce2a30a22f0b654a0101ab1f336388bc2e96dc7057ccc0bd",
+    "ptr.npy": "98f301cd19c6e01a911249cc594431369ed593b686f870c24aee86fcb41c8f81",
+    "signed_raw.npy": "8af7fa8ede8c3da396d00bee2146d01cd549c065702d8e27211df73ad1a32471",
+    "src.npy": "98ccabc84a7a57fa01a92f7164e5333dbe3f90bf18efbccf3cb4f40fef326a5f",
+    "weights.npy": "d751ac5a580f88071e5a876882ada072aeb8e461f76e4fbca4ad41fa4b14f865"
+  },
+  "legacy_apl_worker_sha256": "21ceec65fe42581dc55872010e0025d660e80358905f1cf4df1dadf341a3b291",
+  "scope": "shared-APL-component closed-loop oracle, not all-components-independent CPU equivalence",
+  "spec": {
+    "apl": {
+      "gain": 0.01,
+      "normalization": 1.0,
+      "tau_ms": 20.0
+    },
+    "apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl/apl-bundle",
+    "apl_precision": "float32",
+    "budget_root": "/data/digital-drosophila/experiments/phase4ag-author-apl",
+    "coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
+    "dt_ms": 0.1,
+    "duration_ms": 10.0,
+    "graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl/graphs/fixtures",
+    "kind": "fixture",
+    "legacy_apl_worker": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/legacy_apl_worker.py",
+    "model": {
+      "dt_ms": 0.1,
+      "membrane_tau_ms": 20.0,
+      "refractory_ms": 2.2,
+      "reset_potential_mv": -52.0,
+      "resting_potential_mv": -52.0,
+      "synaptic_delay_ms": 1.8,
+      "synaptic_tau_ms": 5.0,
+      "threshold_mv": -45.0,
+      "w_syn_mv_per_anatomical_synapse": 0.275
+    },
+    "name": "zero",
+    "output_budget_bytes": 16106127360,
+    "precision": "float64",
+    "record_history": true,
+    "science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
+    "steps": 100,
+    "training": false
+  }
+}
@@ -0,0 +1,45 @@
+{
+  "APL_SI_conversion": "h.astype(float64) * float64(0.001), then separate float64 g subtraction",
+  "APL_dtype": "float32",
+  "APL_h_units": "mV; gain already applied in float32",
+  "APL_input": "Brian's own actual global spikes, never candidate spikes or candidate inhibition",
+  "APL_shapes": {
+    "drive": [
+      100,
+      2
+    ],
+    "inhibition": [
+      100,
+      4064
+    ],
+    "state": [
+      100,
+      2
+    ]
+  },
+  "APL_write_schedule": "end, order=0, after original reset, unconditional raw g write; recorder end/order=1",
+  "complete_marker": "summary.json complete=true only after worker exit and all checks",
+  "history_recorded": true,
+  "history_shape": [
+    100,
+    44
+  ],
+  "queue_protocol": "sealed Phase4AF queue_summary; original global edge IDs, including zero-weight/ref-rejected arrivals",
+  "request_columns": [
+    "tick",
+    "neuron_idx",
+    "attempted",
+    "accepted",
+    "rejected"
+  ],
+  "state_hash_encoding": "SHA256 of contiguous little-endian raw f64 V/g and i32 ref",
+  "state_hash_file": "tick-state-hashes.jsonl",
+  "state_npz": [
+    "step",
+    "neuron_idx",
+    "counts",
+    "v",
+    "g",
+    "ref"
+  ]
+}
@@ -0,0 +1,34 @@
+{
+  "membrane_tau_ms": {
+    "author": 20.0,
+    "case": 20.0
+  },
+  "refractory_ms": {
+    "author": 2.2,
+    "case": 2.2
+  },
+  "reset_potential_mv": {
+    "author": -52.0,
+    "case": -52.0
+  },
+  "resting_potential_mv": {
+    "author": -52.0,
+    "case": -52.0
+  },
+  "synaptic_delay_ms": {
+    "author": 1.8,
+    "case": 1.8
+  },
+  "synaptic_tau_ms": {
+    "author": 5.0,
+    "case": 5.0
+  },
+  "threshold_mv": {
+    "author": -45.0,
+    "case": -45.0
+  },
+  "w_syn_mv_per_anatomical_synapse": {
+    "author": 0.275,
+    "case": 0.275
+  }
+}