Seal Phase 4AG author-APL audit and fixed CAL failure
This commit is contained in:
Digital Drosophila Archive
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{
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"phase": "4AG-first-attempt",
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"classification": "EXECUTION-ERROR-NOT-DYNAMICAL-FAILURE",
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"completed_candidate_runs": ["zero-r0", "zero-r1", "zero-r2"],
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"completed_reference_ticks": 0,
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"root_cause": "oracle_apl.py resolved the declared venv Python symlink before Popen, launching system Python without numpy",
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"declared_entry": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
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"verified_resolved_target": "/usr/bin/python3.10",
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"verified_declared_entry_numpy_version": "2.2.6",
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"evidence": ["logs/oracle-zero-r0.log", "oracle/zero/error.json", "oracle/zero/apl-worker.stderr.log", "audit/stopped-fixtures.json"],
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"repair_scope": "New independent execution revision preserves the venv invocation path; all old registered source and outputs remain unchanged",
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"dynamics_or_APL_parameters_changed": false,
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"calibration_started": false,
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"learning_started": false
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}
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@@ -0,0 +1,119 @@
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{
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"status": "INCOMPLETE-NUMERICAL-EXECUTION",
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"numerical_gate_pass": false,
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"fixed_CAL_representation_pass": false,
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"gates": {
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"fixtures": null,
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"probes": null,
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"calibration": null
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},
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"closed_loop_comparisons": [],
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"component_results": {},
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"repeat_results": {},
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"missing_numerical_evidence": {
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"comparisons": [
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"apl_only",
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"arrival_collision",
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"cal-matched_energy-00-s51101",
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"cal-physiological-00-s51101",
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"high_fanin",
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"kc_ref_boundary",
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"natural_request",
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"pn_pulse",
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"two_sources",
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"zero"
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],
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"components": [
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"apl_only",
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"arrival_collision",
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"cal-matched_energy-00-s51101",
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"cal-physiological-00-s51101",
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"high_fanin",
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"kc_ref_boundary",
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"natural_request",
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"pn_pulse",
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"two_sources",
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"zero"
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],
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"repeats": [
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"apl_only-r1",
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"apl_only-r2",
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"arrival_collision-r1",
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"arrival_collision-r2",
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"high_fanin-r1",
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"high_fanin-r2",
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"kc_ref_boundary-r1",
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"kc_ref_boundary-r2",
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"natural_request-r1",
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"natural_request-r2",
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"pn_pulse-r1",
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"pn_pulse-r2",
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"two_sources-r1",
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"two_sources-r2",
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"zero-r1",
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"zero-r2"
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]
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},
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"calibration": null,
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"stopped": [
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{
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"path": "audit/stopped-fixtures.json",
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"report": {
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"stage": "fixtures",
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"type": "RuntimeError",
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"message": "oracle zero failed; inspect /data/digital-drosophila/experiments/phase4ag-author-apl/logs/oracle-zero-r0.log",
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"traceback": "Traceback (most recent call last):\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 43, in main\n rows=[gate_case(n,CFG['fixture_repeats']) for n in CFG['fixtures']]\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 43, in <listcomp>\n rows=[gate_case(n,CFG['fixture_repeats']) for n in CFG['fixtures']]\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 28, in gate_case\n child('oracle',name)\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 21, in child\n if result.returncode:raise RuntimeError(f'{backend} {name} failed; inspect {log}')\nRuntimeError: oracle zero failed; inspect /data/digital-drosophila/experiments/phase4ag-author-apl/logs/oracle-zero-r0.log\n",
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"later_stages_not_permitted": true,
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"partial_outputs_preserved": true,
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"parameters_changed": false
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}
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}
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],
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"old_frozen_integrity_and_five_reference_pass": true,
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"measurements": [
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{
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"case": "zero",
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"total_spikes": 0,
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"accepted_requests": 0,
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"nodes": 44,
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"edges": 287,
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"diagnostic_simulation_seconds": 0.26006703700022626,
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"peak_allocated_vram_bytes": 10748416
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},
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{
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"case": "zero",
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"total_spikes": 0,
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"accepted_requests": 0,
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"nodes": 44,
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"edges": 287,
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"diagnostic_simulation_seconds": 0.24460422299944184,
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"peak_allocated_vram_bytes": 10748416
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},
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{
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"case": "zero",
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"total_spikes": 0,
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"accepted_requests": 0,
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"nodes": 44,
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"edges": 287,
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"diagnostic_simulation_seconds": 0.21965846300008707,
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"peak_allocated_vram_bytes": 10748416
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}
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],
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"unchanged_APL_parameters": {
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"tau_ms": 20.0,
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"gain": 0.01,
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"normalization": 1.0
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},
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"author_LIF_precision": "float64",
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"legacy_APL_precision": "float32",
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"explicit_hypothesis": "Author LIF plus unchanged legacy graded APL operator at end, after reset, unconditional KC g write. Mixed precision: h32 promoted to float64, then multiplied by float64 .001 SI, then subtracted. Not original author's APL model.",
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"APL_nonKC_fast_edges_unreplaced": 1212,
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"shared_APL_component_oracle_limitation": true,
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"whole_brain_universal_equivalence_claim": false,
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"heldout_generalization_tested": false,
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"formal_AB_tested": false,
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"learning_achieved": false,
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"candidate_generated": false,
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"payload_bytes_before_manifest": 1035661187,
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"next_gate": "Audit first failure in this explicitly declared hypothesis; no gain search, no heldout tuning, no conditioning"
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}
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@@ -0,0 +1,14 @@
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{
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"phase": "4AG",
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"event": "First prepare stopped before protocol registration or any trajectory",
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"error": "FileNotFoundError: models/male-cns-lif/phase4p_revalidate.py",
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"verified_actual_source": "models/male-cns-lif/deterministic-runtime-v2/phase4p_revalidate.py",
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"actual_source_sha256": "c7e693a2da70acdce4f53af5c2853e52e8333acc93f88a46a5e8083eac639346",
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"original_declared_content_hash_unchanged": true,
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"experiment_files_before_correction": 0,
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"preregistration_existed": false,
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"scientific_trajectories_executed": 0,
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"correction": "Resolve actual frozen source path; allow already-created empty scaffolding only before preregistration",
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"model_parameters_or_numerical_operations_changed": false,
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"frozen_files_modified": false
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}
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@@ -0,0 +1,9 @@
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{
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"stage": "fixtures",
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"type": "RuntimeError",
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"message": "oracle zero failed; inspect /data/digital-drosophila/experiments/phase4ag-author-apl/logs/oracle-zero-r0.log",
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"traceback": "Traceback (most recent call last):\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 43, in main\n rows=[gate_case(n,CFG['fixture_repeats']) for n in CFG['fixtures']]\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 43, in <listcomp>\n rows=[gate_case(n,CFG['fixture_repeats']) for n in CFG['fixtures']]\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 28, in gate_case\n child('oracle',name)\n File \"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v1/run_suite.py\", line 21, in child\n if result.returncode:raise RuntimeError(f'{backend} {name} failed; inspect {log}')\nRuntimeError: oracle zero failed; inspect /data/digital-drosophila/experiments/phase4ag-author-apl/logs/oracle-zero-r0.log\n",
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"later_stages_not_permitted": true,
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"partial_outputs_preserved": true,
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"parameters_changed": false
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}
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