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Seal Phase 4AJ fixed APL timing hypothesis audit

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Digital Drosophila Archive
2026-09-30 12:08:25 +08:00
parent 8d6b063aaf
commit cb6937666f
1992 changed files with 258416 additions and 10 deletions
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registry/phase4aj-apl-timing/evidence/cases/delay0/apl_only/spec.json
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{
"name": "apl_only",
"kind": "fixture",
"steps": 100,
"dt_ms": 0.1,
"duration_ms": 10.0,
"model": {
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"membrane_tau_ms": 20.0,
"synaptic_tau_ms": 5.0,
"refractory_ms": 2.2,
"resting_potential_mv": -52.0,
"reset_potential_mv": -52.0,
"threshold_mv": -45.0,
"synaptic_delay_ms": 1.8,
"w_syn_mv_per_anatomical_synapse": 0.275
},
"graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/graphs/fixtures",
"apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
"apl": {
"tau_ms": 20.0,
"gain": 0.01,
"normalization": 1.0
},
"record_history": true,
"coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
"science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
"legacy_apl_worker": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
"budget_root": "/data/digital-drosophila/experiments/phase4aj-apl-timing",
"output_budget_bytes": 25769803776,
"precision": "float64",
"apl_precision": "float32",
"training": false,
"apl_delay_steps": 0
}
registry/phase4aj-apl-timing/evidence/cases/delay0/arrival_collision/spec.json
+35
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{
"name": "arrival_collision",
"kind": "fixture",
"steps": 120,
"dt_ms": 0.1,
"duration_ms": 12.0,
"model": {
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"membrane_tau_ms": 20.0,
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},
"graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/graphs/fixtures",
"apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
"apl": {
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},
"record_history": true,
"coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
"science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
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"precision": "float64",
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"training": false,
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}
registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-00-s51101/spec.json
+43
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{
"name": "cal-matched_energy-00-s51101",
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"odor_id": "OMSUIQOIVADKIM-RXMQYKEDSA-N",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-00-s51102/spec.json
+43
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{
"name": "cal-matched_energy-00-s51102",
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"precision": "float64",
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"training": false,
"odor_id": "OMSUIQOIVADKIM-RXMQYKEDSA-N",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-00-s51103/spec.json
+43
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@@ -0,0 +1,43 @@
{
"name": "cal-matched_energy-00-s51103",
"kind": "calibration",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-00-s51104/spec.json
+43
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@@ -0,0 +1,43 @@
{
"name": "cal-matched_energy-00-s51104",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-00-s51105/spec.json
+43
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@@ -0,0 +1,43 @@
{
"name": "cal-matched_energy-00-s51105",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-01-s51101/spec.json
+43
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@@ -0,0 +1,43 @@
{
"name": "cal-matched_energy-01-s51101",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-01-s51102/spec.json
+43
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@@ -0,0 +1,43 @@
{
"name": "cal-matched_energy-01-s51102",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-01-s51103/spec.json
+43
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@@ -0,0 +1,43 @@
{
"name": "cal-matched_energy-01-s51103",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-01-s51104/spec.json
+43
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@@ -0,0 +1,43 @@
{
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}
registry/phase4aj-apl-timing/evidence/cases/delay0/cal-matched_energy-01-s51105/spec.json
+43
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@@ -0,0 +1,43 @@
{
"name": "cal-matched_energy-01-s51105",
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registry/phase4aj-apl-timing/evidence/cases/delay0/cal-physiological-05-s51105/spec.json
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registry/phase4aj-apl-timing/evidence/cases/delay0/high_fanin/spec.json
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registry/phase4aj-apl-timing/evidence/cases/delay0/kc_ref_boundary/spec.json
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registry/phase4aj-apl-timing/evidence/cases/delay0/natural_request/spec.json
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registry/phase4aj-apl-timing/evidence/cases/delay0/pn_pulse/spec.json
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registry/phase4aj-apl-timing/evidence/cases/delay0/two_sources/spec.json
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registry/phase4aj-apl-timing/evidence/cases/delay0/zero/spec.json
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