Seal Phase 4AK frozen D18 independent validation
This commit is contained in:
+12
@@ -0,0 +1,12 @@
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{
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||||
"KC_targets_in_case": 4064,
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||||
"base_graph_files_modified": false,
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||||
"base_weight_raw_bytes_sha256": "a8c19cde743bd456bcb2e988d504f805b6943d6ceb97cd241d6e1e472ab5a591",
|
||||
"count": 5845,
|
||||
"effective_weights_file_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b",
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
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||||
"fullgraph_required_mask_count": 5845,
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||||
"graded_targets": "only KC identities present in this LIF case",
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||||
"ordered_original_edge_id_sha256": "78d88b017b336f9c72a230680a39a9c4e74fedeff6fbb7b9c8641f30cb15e72b",
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||||
"rule": "zero +0 all existing fast edges whose source GLOBAL neuron is in apl_globals; no graph edge removal"
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}
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+39
@@ -0,0 +1,39 @@
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{
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||||
"APL_generation_steps_after_window": 0,
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||||
"apl_delay_steps": 18,
|
||||
"applied_generated_rows": 982,
|
||||
"brain_steps_after_window": 0,
|
||||
"brain_tail_advanced": false,
|
||||
"closed_loop_branch_integrals_claimed_equal": false,
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||||
"delay_implementation": "independent list FIFO; no candidate or timing_queue imports",
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||||
"final_apl_state_float32": [
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148.8344268798828,
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172.29991149902344
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||||
],
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||||
"final_apl_state_nonzero": true,
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||||
"final_apl_state_u32_bits": [
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||||
1125438877,
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||||
1126976711
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||||
],
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||||
"finite_generated_sequence_partition_exact": true,
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||||
"future_apl_decay_or_feedback_generated": false,
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||||
"future_generated_decay_tail_included": false,
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"generated_rows": 1000,
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"initial_zero_prefix": 0,
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"meaning": "Tail contains only already generated h and any remaining initial-zero padding; never a complete future closed-loop or decay tail",
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"pending_application_tick_start": 1000,
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"pending_application_tick_stop_exclusive": 1018,
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||||
"pending_file_sha256": "6fe96517fc7e7ec8f991a9a9b1fb5a9c4d9a27d4532f17a17676fc540b427fa3",
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||||
"pending_generated_count": 18,
|
||||
"pending_generated_tick_start": 982,
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||||
"pending_generated_tick_stop_exclusive": 1000,
|
||||
"pending_initial_zero_prefix": 0,
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||||
"pending_raw_sha256": "479e12060457c98eef9daa5b4417d5dca1da61716a3163dd4da3add350533cba",
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||||
"pending_shape": [
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18,
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4064
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],
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"positive_zero_warmup_exact": true,
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"steps": 1000,
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"transport_shift_exact": true
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}
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+56
@@ -0,0 +1,56 @@
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{
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"command": [
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"/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
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"-B",
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"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
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"--bundle-dir",
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"/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
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"--dt-ms",
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"0.1"
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],
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||||
"handshake": {
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||||
"array_sha256": {
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||||
"apl_globals.npy": "979ef88dff30d41168ce9b377a006ccb3cd034b2dce86d54923ca0f4b87cb6a6",
|
||||
"input_matrix.npy": "528a5f6f5ffe424f323c5a44695db4a7cf32570709832eff2f37f49e85c92c3e",
|
||||
"kc_globals.npy": "9e990d10a63b0f74cd7bbbdc5369082f24d5246487af944ba289bc6bf48d4b75",
|
||||
"output_matrix.npy": "0dcf02cdb7836ab72da32ac47f5682ca33e25f63a8a662a8452d4ea9d46babb9"
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},
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||||
"decay_f32_bits": "3f7eb923",
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||||
"dt_ms": 0.1,
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"environment": {
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"CUBLAS_WORKSPACE_CONFIG": null,
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"cuda": "13.0",
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||||
"cuda_matmul_allow_tf32": false,
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"cudnn": 92400,
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"cudnn_allow_tf32": true,
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"cudnn_benchmark": false,
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"cudnn_deterministic": false,
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"deterministic_algorithms": false,
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||||
"device_capability": [
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8,
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9
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||||
],
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"device_index": 0,
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||||
"device_name": "NVIDIA GeForce RTX 4090",
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"float32_matmul_precision": "highest",
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"numpy": "2.2.6",
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||||
"precision_configuration_changed_by_component": false,
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||||
"torch": "2.14.0+cu130"
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||||
},
|
||||
"files_sha256": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
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||||
},
|
||||
"gain_f32_bits": "3c23d70a",
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||||
"h_units": "legacy mV",
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||||
"initial_state": "float32 zeros",
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"n_apl": 2,
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"n_kc": 4064,
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"n_neurons": 166700,
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"ok": true,
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"operator_sequence": "state.mul_(decay32); drive=mv(I32,spikes32); state.add_(drive); h=matmul(state,O32)*gain32",
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"protocol": "phase4ag-apl-v1"
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}
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||||
}
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+72
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{
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||||
"c0": -0.00025935108198051754,
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"cg": 0.004937935295309027,
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||||
"cv": 0.9950124791926823,
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||||
"gd": 0.9801986733067553,
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"metadata": {
|
||||
"constant_values_are_double": true,
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||||
"float32_execution_note": "Brian NumPy scalar/array promotion and operation order must be matched separately; double coefficients alone do not assert float64 intermediate array arithmetic.",
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"g_expression": "gd * old_g",
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||||
"hex": {
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||||
"c0": "-0x1.0ff306a505980p-12",
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||||
"cg": "0x1.439cce9a65d5bp-8",
|
||||
"cv": "0x1.fd7246927d28bp-1",
|
||||
"gd": "0x1.f5dc99badec5bp-1",
|
||||
"reset": "-0x1.a9fbe76c8b43ap-5",
|
||||
"seed_volt": "-0x1.6872b020c49bap-5",
|
||||
"threshold": "-0x1.70a3d70a3d70ap-5"
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||||
},
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||||
"names": {
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||||
"c0": "_lio_8",
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||||
"cg": "_lio_9",
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||||
"cv": "_lio_10",
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||||
"gd": "_lio_2"
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||||
},
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||||
"provenance": {
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||||
"c0": {
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||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_8",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"cg": {
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||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_9",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
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||||
},
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||||
"cv": {
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||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_10",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"gd": {
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||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_2",
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||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
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||||
"reset": {
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||||
"code_object": "default_neurons_spike_resetter_codeobject_1",
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||||
"name": "v_rst",
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||||
"namespace_dtype": "float64",
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||||
"source": "CodeObject.namespace"
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||||
},
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||||
"seed_volt": {
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||||
"source": "common request interface: unchanged v_th + 1 mV"
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||||
},
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||||
"threshold": {
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||||
"code_object": "default_neurons_spike_thresholder_codeobject_1",
|
||||
"name": "v_th",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
}
|
||||
},
|
||||
"units": "SI volts and dimensionless coefficients",
|
||||
"voltage_expression": "c0 + ((cg * old_g) + (cv * old_v))"
|
||||
},
|
||||
"reset": -0.052000000000000005,
|
||||
"seed_volt": -0.044,
|
||||
"threshold": -0.045
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
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[
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||||
{
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||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n not_refractory = _array_default_neurons_not_refractory.copy()\n t = _array_defaultclock_t[0]\n g = _array_default_neurons_g.copy()\n dt = _array_defaultclock_dt[0]\n rfc = _array_default_neurons_rfc\n lastspike = _array_default_neurons_lastspike\n v = _array_default_neurons_v.copy()\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_v[:] = v\n _array_default_neurons_not_refractory[:] = not_refractory\n _array_default_neurons_g[:] = g\n",
|
||||
"name": "default_neurons_stateupdater_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n v = _array_default_neurons_v\n not_refractory = _array_default_neurons_not_refractory\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_t = _array_defaultclock_t[0]\n _source_i = _array_default_neurons_i[_idx]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _array_spikemonitor_count[_events - _source_start] += 1\n",
|
||||
"name": "spikemonitor_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n w = _array_default_synapses_w[_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\n",
|
||||
"name": "default_synapses_pre_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_v[_idx] = v\n _array_default_neurons_g[_idx] = g\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+17
@@ -0,0 +1,17 @@
|
||||
{
|
||||
"APL_precision": "float32 in separate science-Python process",
|
||||
"Torch_imported_into_Brian": false,
|
||||
"author_precision": "float64",
|
||||
"codegen": "numpy",
|
||||
"packages": {
|
||||
"brian2": "2.5.1",
|
||||
"cython": "0.29.33",
|
||||
"numpy": "1.22.3",
|
||||
"pandas": "1.4.3",
|
||||
"pyarrow": "11.0.0",
|
||||
"scipy": "1.8.1",
|
||||
"sympy": "1.12"
|
||||
},
|
||||
"platform": "Linux-5.15.0-194-generic-x86_64-with-glibc2.35",
|
||||
"python": "3.10.12 (main, Aug 31 2026, 10:18:17) [GCC 11.4.0]"
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
|
||||
[
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n not_refractory = _array_default_neurons_not_refractory.copy()\n t = _array_defaultclock_t[0]\n g = _array_default_neurons_g.copy()\n dt = _array_defaultclock_dt[0]\n rfc = _array_default_neurons_rfc\n lastspike = _array_default_neurons_lastspike\n v = _array_default_neurons_v.copy()\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_v[:] = v\n _array_default_neurons_not_refractory[:] = not_refractory\n _array_default_neurons_g[:] = g\n",
|
||||
"name": "default_neurons_stateupdater_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n v = _array_default_neurons_v\n not_refractory = _array_default_neurons_not_refractory\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_t = _array_defaultclock_t[0]\n _source_i = _array_default_neurons_i[_idx]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _array_spikemonitor_count[_events - _source_start] += 1\n",
|
||||
"name": "spikemonitor_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n w = _array_default_synapses_w[_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\n",
|
||||
"name": "default_synapses_pre_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_v[_idx] = v\n _array_default_neurons_g[_idx] = g\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+80
@@ -0,0 +1,80 @@
|
||||
{
|
||||
"ae_sha256": "32eb1c42383068ce52701d2139a376ce155ad7072cde019949f8ca2d55492409",
|
||||
"af_sha256": "d72003d98f0f1624b12126eff50bd361c43d888f4a64d90ba9247a58976f1961",
|
||||
"apl_delay_steps": 18,
|
||||
"author_sha256": "fc45837d7122c6ce2a7f3f2f23c515992e4b232aadb919efabb72337fac88e4e",
|
||||
"bundle_hashes": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"candidate_trace_used_as_input": false,
|
||||
"case_hashes": {
|
||||
"requests.npz": "2492a95c805c779db16753a786a20e5668885ae9f54f4be39e6d86e3090e5cd3",
|
||||
"spec.json": "f57a9d8eba2548c8a4c1129494620f55e12acf5a4492ee04301c3c90c7ad15c8"
|
||||
},
|
||||
"coefficients_sha256": "bde79d95ef0097b827d5faf4d5658eafc009d8e9fcef1fddd645c953823e3f64",
|
||||
"copied_oracle_sha256": "357a7d3debb5abc34a8714c0233b456547a154d9d5855d28661b4f01019a80ea",
|
||||
"copied_oracle_source": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/oracle_apl.py",
|
||||
"graph_hashes": {
|
||||
"completeness.csv": "fb9033398abb7585ae63472ced9d8c8cab787f69965dc9ce5fa409ab105bc1bc",
|
||||
"connectivity.parquet": "1362c1102b74f5552f4b01fca956574fd6252f749e31493c4a00a1bc9eab00b3",
|
||||
"dst.npy": "ce20f7433f78442c717ad2a7b5394cf4a3b109d990b4be0788040b7b0f4ed150",
|
||||
"edge_id.npy": "49260615ff2b6432ce3dea9ce2c7ab8f83d06c2fb7491e58e08355fcedf86a30",
|
||||
"nodes.npy": "5b511a98e8fbf8d65bbc70b93e75ecae19366f650b7842a45611bfad62ed83dc",
|
||||
"ptr.npy": "fe43420f11e6242a11f8199ae7f097cab4b8a6db181d36f2a46b9e46670acbb4",
|
||||
"signed_raw.npy": "f9884ccb8930b32420b27c69271df78034a8350fe5a5c9b76a63c259268efc09",
|
||||
"src.npy": "bfd625ce690fc21eb0a8b9dede831688ab73b789045ba83ddf4baeefeddf1fc3",
|
||||
"weights.npy": "462839ffc3feb8f6c278044488082b1c8e410e7f23229d6b5e29d1b7042416a1"
|
||||
},
|
||||
"legacy_apl_worker_sha256": "21ceec65fe42581dc55872010e0025d660e80358905f1cf4df1dadf341a3b291",
|
||||
"only_scientific_change": "transport generated graded-APL h before the unchanged end write",
|
||||
"scope": "shared-APL-component closed-loop oracle, not all-components-independent CPU equivalence",
|
||||
"spec": {
|
||||
"apl": {
|
||||
"gain": 0.01,
|
||||
"normalization": 1.0,
|
||||
"tau_ms": 20.0
|
||||
},
|
||||
"apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"apl_delay_steps": 18,
|
||||
"apl_precision": "float32",
|
||||
"budget_root": "/data/digital-drosophila/experiments/phase4ak-apl-timing-validation",
|
||||
"coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
|
||||
"dt_ms": 0.1,
|
||||
"duration_ms": 100.0,
|
||||
"expected_external_events": 102.2443115234375,
|
||||
"graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/graphs/full",
|
||||
"kind": "fullgraph",
|
||||
"legacy_apl_worker": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"mode": "matched_energy",
|
||||
"model": {
|
||||
"dt_ms": 0.1,
|
||||
"membrane_tau_ms": 20.0,
|
||||
"refractory_ms": 2.2,
|
||||
"reset_potential_mv": -52.0,
|
||||
"resting_potential_mv": -52.0,
|
||||
"synaptic_delay_ms": 1.8,
|
||||
"synaptic_tau_ms": 5.0,
|
||||
"threshold_mv": -45.0,
|
||||
"w_syn_mv_per_anatomical_synapse": 0.275
|
||||
},
|
||||
"name": "novel_to_aj-matched_energy-00-s1073741825",
|
||||
"odor_id": "YSNWHRKJEKWJNY-UHFFFAOYSA-N",
|
||||
"odor_index": 0,
|
||||
"odor_name": "ethyl 3-methylsulfanylpropanoate",
|
||||
"output_budget_bytes": 25769803776,
|
||||
"precision": "float64",
|
||||
"rate_sum_hz": 1022.443115234375,
|
||||
"record_history": false,
|
||||
"science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"seed": 1073741825,
|
||||
"source_panel_row": 6,
|
||||
"source_panel_split": "heldout",
|
||||
"steps": 1000,
|
||||
"target_count": 35,
|
||||
"training": false,
|
||||
"validation_cohort": "novel_to_aj"
|
||||
}
|
||||
}
|
||||
+60
@@ -0,0 +1,60 @@
|
||||
{
|
||||
"APL_SI_conversion": "h.astype(float64) * float64(0.001), then separate float64 g subtraction",
|
||||
"APL_dtype": "float32",
|
||||
"APL_h_units": "mV; gain already applied in float32",
|
||||
"APL_inhibition_file_means": "generated h at the actual closed-loop Brian spike tick, not the delayed applied value",
|
||||
"APL_input": "Brian's own actual global spikes, never candidate spikes or candidate inhibition",
|
||||
"APL_pending_file": "apl-pending-tail.float32.npy",
|
||||
"APL_pending_generated_count": 18,
|
||||
"APL_pending_initial_zero_prefix": 0,
|
||||
"APL_pending_scope": "next D scheduled applications from recorded h plus unconsumed initial zero slots; not future generated decay",
|
||||
"APL_shapes": {
|
||||
"applied": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"drive": [
|
||||
1000,
|
||||
2
|
||||
],
|
||||
"inhibition": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"pending_tail": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"state": [
|
||||
1000,
|
||||
2
|
||||
]
|
||||
},
|
||||
"APL_transport": "applied[t]=generated_h[t-D] for t>=D, positive zero otherwise; separate independent list FIFO",
|
||||
"APL_write_schedule": "end, order=0, after original reset, unconditional raw g write; recorder end/order=1",
|
||||
"apl_delay_steps": 18,
|
||||
"complete_marker": "summary.json complete=true only after worker exit and all checks",
|
||||
"history_recorded": false,
|
||||
"history_shape": [
|
||||
1000,
|
||||
166700
|
||||
],
|
||||
"queue_protocol": "sealed Phase4AF queue_summary; original global edge IDs, including zero-weight/ref-rejected arrivals",
|
||||
"request_columns": [
|
||||
"tick",
|
||||
"neuron_idx",
|
||||
"attempted",
|
||||
"accepted",
|
||||
"rejected"
|
||||
],
|
||||
"state_hash_encoding": "SHA256 of contiguous little-endian raw f64 V/g and i32 ref",
|
||||
"state_hash_file": "tick-state-hashes.jsonl",
|
||||
"state_npz": [
|
||||
"step",
|
||||
"neuron_idx",
|
||||
"counts",
|
||||
"v",
|
||||
"g",
|
||||
"ref"
|
||||
]
|
||||
}
|
||||
+34
@@ -0,0 +1,34 @@
|
||||
{
|
||||
"membrane_tau_ms": {
|
||||
"author": 20.0,
|
||||
"case": 20.0
|
||||
},
|
||||
"refractory_ms": {
|
||||
"author": 2.2,
|
||||
"case": 2.2
|
||||
},
|
||||
"reset_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"resting_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"synaptic_delay_ms": {
|
||||
"author": 1.8,
|
||||
"case": 1.8
|
||||
},
|
||||
"synaptic_tau_ms": {
|
||||
"author": 5.0,
|
||||
"case": 5.0
|
||||
},
|
||||
"threshold_mv": {
|
||||
"author": -45.0,
|
||||
"case": -45.0
|
||||
},
|
||||
"w_syn_mv_per_anatomical_synapse": {
|
||||
"author": 0.275,
|
||||
"case": 0.275
|
||||
}
|
||||
}
|
||||
+15
@@ -0,0 +1,15 @@
|
||||
{
|
||||
"advance_calls": 1000,
|
||||
"forwarding_contract": "sealed AE/AF design",
|
||||
"installations": [
|
||||
"default_synapses_pre_codeobject",
|
||||
"default_synapses_pre_codeobject_1"
|
||||
],
|
||||
"limit": "Current wrapper was not independently rerun without the queue proxy",
|
||||
"new_unwrapped_repeat_performed": false,
|
||||
"original_edge_ids_not_sorted_or_filtered": true,
|
||||
"peek_calls": 1000,
|
||||
"post_threshold_pre_synaptic_guard_observed": true,
|
||||
"same_peek_object_returned": true,
|
||||
"zero_weight_and_refractory_rejected_edges_retained": true
|
||||
}
|
||||
+110
@@ -0,0 +1,110 @@
|
||||
tick,neuron_idx,attempted,accepted,rejected
|
||||
20,7322,1,1,0
|
||||
21,53508,1,1,0
|
||||
24,999,1,1,0
|
||||
25,530,1,1,0
|
||||
31,159,1,1,0
|
||||
37,2029,1,1,0
|
||||
43,530,1,0,1
|
||||
50,522,1,1,0
|
||||
51,1372,1,1,0
|
||||
58,9052,1,1,0
|
||||
73,530,1,1,0
|
||||
81,530,1,0,1
|
||||
95,622,1,1,0
|
||||
114,710,1,1,0
|
||||
115,2029,1,1,0
|
||||
136,79514,1,1,0
|
||||
138,79514,1,0,1
|
||||
150,130753,1,1,0
|
||||
152,130753,1,0,1
|
||||
154,530,1,0,1
|
||||
155,2029,1,1,0
|
||||
157,54264,1,1,0
|
||||
160,54264,1,0,1
|
||||
163,54264,1,0,1
|
||||
172,2029,1,0,1
|
||||
183,7322,1,1,0
|
||||
190,130753,1,1,0
|
||||
195,7322,1,0,1
|
||||
201,97,1,1,0
|
||||
202,530,1,0,1
|
||||
204,9052,1,1,0
|
||||
214,55121,1,1,0
|
||||
220,522,1,1,0
|
||||
234,1011,1,1,0
|
||||
257,530,1,1,0
|
||||
278,6721,1,1,0
|
||||
287,999,1,0,1
|
||||
295,189,1,0,1
|
||||
326,571,1,0,1
|
||||
334,360,1,0,1
|
||||
353,79514,1,1,0
|
||||
366,1372,1,1,0
|
||||
386,189,1,1,0
|
||||
408,1011,1,1,0
|
||||
415,130753,1,0,1
|
||||
423,434,1,1,0
|
||||
430,130257,1,1,0
|
||||
446,79514,1,1,0
|
||||
463,2601,1,0,1
|
||||
469,522,1,1,0
|
||||
479,159,1,1,0
|
||||
481,360,1,1,0
|
||||
511,9052,1,1,0
|
||||
513,571,1,1,0
|
||||
527,54264,1,1,0
|
||||
547,189,1,1,0
|
||||
554,999,1,1,0
|
||||
556,2029,1,1,0
|
||||
556,9052,1,1,0
|
||||
567,4786,1,1,0
|
||||
567,79514,1,1,0
|
||||
568,7680,1,1,0
|
||||
610,434,1,1,0
|
||||
613,1011,1,1,0
|
||||
629,159,1,0,1
|
||||
643,130753,1,1,0
|
||||
657,1011,1,1,0
|
||||
682,1372,1,0,1
|
||||
695,6721,1,1,0
|
||||
704,4624,1,1,0
|
||||
710,9052,1,1,0
|
||||
714,700,1,0,1
|
||||
725,1372,1,0,1
|
||||
725,7680,1,1,0
|
||||
726,6721,1,1,0
|
||||
742,1022,1,1,0
|
||||
750,1011,1,1,0
|
||||
754,189,1,1,0
|
||||
755,4624,1,1,0
|
||||
770,130753,1,0,1
|
||||
795,97,1,1,0
|
||||
814,189,1,1,0
|
||||
817,360,1,0,1
|
||||
817,6721,1,1,0
|
||||
831,434,1,1,0
|
||||
836,133666,1,1,0
|
||||
842,530,1,0,1
|
||||
844,54264,1,1,0
|
||||
846,530,1,0,1
|
||||
847,97,1,1,0
|
||||
886,522,1,1,0
|
||||
890,189,1,0,1
|
||||
896,1372,1,1,0
|
||||
896,133666,1,1,0
|
||||
897,1011,1,1,0
|
||||
902,1011,1,0,1
|
||||
906,530,1,1,0
|
||||
909,97,1,0,1
|
||||
915,1927,1,1,0
|
||||
950,4786,1,1,0
|
||||
952,360,1,1,0
|
||||
957,7322,1,1,0
|
||||
964,189,1,1,0
|
||||
965,522,1,0,1
|
||||
974,2029,1,1,0
|
||||
977,79514,1,0,1
|
||||
982,97,1,0,1
|
||||
992,54264,1,1,0
|
||||
998,189,1,1,0
|
||||
|
+9
@@ -0,0 +1,9 @@
|
||||
{
|
||||
"apl_delay_steps": 18,
|
||||
"backend": "oracle",
|
||||
"dynamics_copied_or_reimplemented": false,
|
||||
"old_module_scientific_globals_changed": false,
|
||||
"scope": "Unchanged AJ runtime called with new case/output/build arguments; not a new numerical model",
|
||||
"sealed_runtime": "/data/digital-drosophila/models/male-cns-lif/apl-timing-lab-v1/oracle_timing.py",
|
||||
"sealed_runtime_sha256": "39d8c47c94bc2faddf016864a43e7715907fb987f56f7b27098060a88851f6be"
|
||||
}
|
||||
+11
@@ -0,0 +1,11 @@
|
||||
{
|
||||
"schedule": [
|
||||
"start",
|
||||
"groups",
|
||||
"thresholds",
|
||||
"synapses",
|
||||
"resets",
|
||||
"end"
|
||||
],
|
||||
"summary": " object | part of | Clock dt | when | order | active\n---------------------------------------------------+-------------------------------+----------------------+-------------------+---------+-------\ndefault_neurons_stateupdater (StateUpdater) | default_neurons (NeuronGroup) | 100. us (every step) | groups | 0 | yes \noracle_common_requests (NetworkOperation) | -- | 100. us (every step) | before_thresholds | 0 | yes \ndefault_neurons_spike_thresholder (Thresholder) | default_neurons (NeuronGroup) | 100. us (every step) | thresholds | 0 | yes \nspikemonitor (SpikeMonitor) | spikemonitor (SpikeMonitor) | 100. us (every step) | thresholds | 1 | yes \ndefault_synapses_pre (SynapticPathway) | default_synapses (Synapses) | 100. us (every step) | synapses | -1 | yes \ndefault_neurons_spike_resetter (Resetter) | default_neurons (NeuronGroup) | 100. us (every step) | resets | 0 | yes \noracle_legacy_apl_unconditional (NetworkOperation) | -- | 100. us (every step) | end | 0 | yes \noracle_after_apl_record (NetworkOperation) | -- | 100. us (every step) | end | 1 | yes \nzz_apl_queue_installer (QueueInstaller) | -- | 100. us (every step) | end | 1000000 | yes "
|
||||
}
|
||||
+51
@@ -0,0 +1,51 @@
|
||||
{
|
||||
"APL_applied_sha256": "a0b0fb96df98f1b589f81d6169d095ed22a0896de92725b00bb1d42e01c4f206",
|
||||
"APL_fast_edges_zeroed": 5845,
|
||||
"APL_finite_sequence_partition_exact": true,
|
||||
"APL_pending_tail_sha256": "6fe96517fc7e7ec8f991a9a9b1fb5a9c4d9a27d4532f17a17676fc540b427fa3",
|
||||
"APL_precision": "float32",
|
||||
"APL_timing_audit_sha256": "d5a6b9b87bb29eab8849aaf284de8a3383d169d7f76ad04d8ab9dfaf230fda89",
|
||||
"APL_transport_shift_exact": true,
|
||||
"APL_worker_exit_status": 0,
|
||||
"APL_worker_ticks": 1000,
|
||||
"apl_delay_steps": 18,
|
||||
"apl_fast_edges_zeroed": 5845,
|
||||
"applicable_requests": 79,
|
||||
"backend": "shared-APL-component closed-loop Brian2 oracle",
|
||||
"candidate_trace_used_as_input": false,
|
||||
"complete": true,
|
||||
"completed_ticks": 1000,
|
||||
"edges": 25582938,
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"events_sha256": "a1127296a157423910edcff21be25df8f54d33ea071c43dc23d8ff2e96ff8f19",
|
||||
"future_generated_decay_tail_included": false,
|
||||
"history_recorded": false,
|
||||
"independent_CPU_all_components_claim": false,
|
||||
"initial_zero_prefix": 0,
|
||||
"kc_targets_present": 4064,
|
||||
"name": "novel_to_aj-matched_energy-00-s1073741825",
|
||||
"no_poi": true,
|
||||
"no_training": true,
|
||||
"nodes": 166700,
|
||||
"output_budget_bytes": 25769803776,
|
||||
"output_bytes_before_summary": 3665862279,
|
||||
"pass_all": true,
|
||||
"pass_all_scope": "Oracle construction, protocol and internal self-checks only; candidate comparison is a separate gate",
|
||||
"pending_generated_count": 18,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_tail_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"precision": "float64",
|
||||
"queue_sha256": "102e549d18bc7a421dc1500c7436bf7abee361e1e2bedaad50b9546d2aa56167",
|
||||
"ref_rejected_requests": 30,
|
||||
"requests": 109,
|
||||
"scope": "Only this fixed trajectory; legacy Torch APL is a shared numerical component, not an independent CPU APL implementation",
|
||||
"single_continuous_run": true,
|
||||
"source_and_inputs_unchanged": true,
|
||||
"spikes": 29962,
|
||||
"state_hashes_sha256": "a92a4ca83752275c8118911d8d2c8543df4bc4e45d8e08151f3bf5964dc3b8cf",
|
||||
"steps": 1000,
|
||||
"weights_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b"
|
||||
}
|
||||
+12
@@ -0,0 +1,12 @@
|
||||
{
|
||||
"KC_targets_in_case": 4064,
|
||||
"base_graph_files_modified": false,
|
||||
"base_weight_raw_bytes_sha256": "a8c19cde743bd456bcb2e988d504f805b6943d6ceb97cd241d6e1e472ab5a591",
|
||||
"count": 5845,
|
||||
"effective_weights_file_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b",
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"fullgraph_required_mask_count": 5845,
|
||||
"graded_targets": "only KC identities present in this LIF case",
|
||||
"ordered_original_edge_id_sha256": "78d88b017b336f9c72a230680a39a9c4e74fedeff6fbb7b9c8641f30cb15e72b",
|
||||
"rule": "zero +0 all existing fast edges whose source GLOBAL neuron is in apl_globals; no graph edge removal"
|
||||
}
|
||||
+39
@@ -0,0 +1,39 @@
|
||||
{
|
||||
"APL_generation_steps_after_window": 0,
|
||||
"apl_delay_steps": 18,
|
||||
"applied_generated_rows": 982,
|
||||
"brain_steps_after_window": 0,
|
||||
"brain_tail_advanced": false,
|
||||
"closed_loop_branch_integrals_claimed_equal": false,
|
||||
"delay_implementation": "independent list FIFO; no candidate or timing_queue imports",
|
||||
"final_apl_state_float32": [
|
||||
152.68724060058594,
|
||||
166.99606323242188
|
||||
],
|
||||
"final_apl_state_nonzero": true,
|
||||
"final_apl_state_u32_bits": [
|
||||
1125691375,
|
||||
1126629118
|
||||
],
|
||||
"finite_generated_sequence_partition_exact": true,
|
||||
"future_apl_decay_or_feedback_generated": false,
|
||||
"future_generated_decay_tail_included": false,
|
||||
"generated_rows": 1000,
|
||||
"initial_zero_prefix": 0,
|
||||
"meaning": "Tail contains only already generated h and any remaining initial-zero padding; never a complete future closed-loop or decay tail",
|
||||
"pending_application_tick_start": 1000,
|
||||
"pending_application_tick_stop_exclusive": 1018,
|
||||
"pending_file_sha256": "0bbf355ce1ddb2d2ddfdd73a0ca2fba59dd479584403a6cf8aa0b8d2336935f9",
|
||||
"pending_generated_count": 18,
|
||||
"pending_generated_tick_start": 982,
|
||||
"pending_generated_tick_stop_exclusive": 1000,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_raw_sha256": "7e7809e834debf7f983f54907901965c969e2e88ba987605e5823ceadc139bd9",
|
||||
"pending_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"positive_zero_warmup_exact": true,
|
||||
"steps": 1000,
|
||||
"transport_shift_exact": true
|
||||
}
|
||||
+56
@@ -0,0 +1,56 @@
|
||||
{
|
||||
"command": [
|
||||
"/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"-B",
|
||||
"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"--bundle-dir",
|
||||
"/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"--dt-ms",
|
||||
"0.1"
|
||||
],
|
||||
"handshake": {
|
||||
"array_sha256": {
|
||||
"apl_globals.npy": "979ef88dff30d41168ce9b377a006ccb3cd034b2dce86d54923ca0f4b87cb6a6",
|
||||
"input_matrix.npy": "528a5f6f5ffe424f323c5a44695db4a7cf32570709832eff2f37f49e85c92c3e",
|
||||
"kc_globals.npy": "9e990d10a63b0f74cd7bbbdc5369082f24d5246487af944ba289bc6bf48d4b75",
|
||||
"output_matrix.npy": "0dcf02cdb7836ab72da32ac47f5682ca33e25f63a8a662a8452d4ea9d46babb9"
|
||||
},
|
||||
"decay_f32_bits": "3f7eb923",
|
||||
"dt_ms": 0.1,
|
||||
"environment": {
|
||||
"CUBLAS_WORKSPACE_CONFIG": null,
|
||||
"cuda": "13.0",
|
||||
"cuda_matmul_allow_tf32": false,
|
||||
"cudnn": 92400,
|
||||
"cudnn_allow_tf32": true,
|
||||
"cudnn_benchmark": false,
|
||||
"cudnn_deterministic": false,
|
||||
"deterministic_algorithms": false,
|
||||
"device_capability": [
|
||||
8,
|
||||
9
|
||||
],
|
||||
"device_index": 0,
|
||||
"device_name": "NVIDIA GeForce RTX 4090",
|
||||
"float32_matmul_precision": "highest",
|
||||
"numpy": "2.2.6",
|
||||
"precision_configuration_changed_by_component": false,
|
||||
"torch": "2.14.0+cu130"
|
||||
},
|
||||
"files_sha256": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"gain_f32_bits": "3c23d70a",
|
||||
"h_units": "legacy mV",
|
||||
"initial_state": "float32 zeros",
|
||||
"n_apl": 2,
|
||||
"n_kc": 4064,
|
||||
"n_neurons": 166700,
|
||||
"ok": true,
|
||||
"operator_sequence": "state.mul_(decay32); drive=mv(I32,spikes32); state.add_(drive); h=matmul(state,O32)*gain32",
|
||||
"protocol": "phase4ag-apl-v1"
|
||||
}
|
||||
}
|
||||
+72
@@ -0,0 +1,72 @@
|
||||
{
|
||||
"c0": -0.00025935108198051754,
|
||||
"cg": 0.004937935295309027,
|
||||
"cv": 0.9950124791926823,
|
||||
"gd": 0.9801986733067553,
|
||||
"metadata": {
|
||||
"constant_values_are_double": true,
|
||||
"float32_execution_note": "Brian NumPy scalar/array promotion and operation order must be matched separately; double coefficients alone do not assert float64 intermediate array arithmetic.",
|
||||
"g_expression": "gd * old_g",
|
||||
"hex": {
|
||||
"c0": "-0x1.0ff306a505980p-12",
|
||||
"cg": "0x1.439cce9a65d5bp-8",
|
||||
"cv": "0x1.fd7246927d28bp-1",
|
||||
"gd": "0x1.f5dc99badec5bp-1",
|
||||
"reset": "-0x1.a9fbe76c8b43ap-5",
|
||||
"seed_volt": "-0x1.6872b020c49bap-5",
|
||||
"threshold": "-0x1.70a3d70a3d70ap-5"
|
||||
},
|
||||
"names": {
|
||||
"c0": "_lio_8",
|
||||
"cg": "_lio_9",
|
||||
"cv": "_lio_10",
|
||||
"gd": "_lio_2"
|
||||
},
|
||||
"provenance": {
|
||||
"c0": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_8",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"cg": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_9",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"cv": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_10",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"gd": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_2",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"reset": {
|
||||
"code_object": "default_neurons_spike_resetter_codeobject_1",
|
||||
"name": "v_rst",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"seed_volt": {
|
||||
"source": "common request interface: unchanged v_th + 1 mV"
|
||||
},
|
||||
"threshold": {
|
||||
"code_object": "default_neurons_spike_thresholder_codeobject_1",
|
||||
"name": "v_th",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
}
|
||||
},
|
||||
"units": "SI volts and dimensionless coefficients",
|
||||
"voltage_expression": "c0 + ((cg * old_g) + (cv * old_v))"
|
||||
},
|
||||
"reset": -0.052000000000000005,
|
||||
"seed_volt": -0.044,
|
||||
"threshold": -0.045
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
|
||||
[
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n dt = _array_defaultclock_dt[0]\n lastspike = _array_default_neurons_lastspike\n g = _array_default_neurons_g.copy()\n rfc = _array_default_neurons_rfc\n t = _array_defaultclock_t[0]\n v = _array_default_neurons_v.copy()\n not_refractory = _array_default_neurons_not_refractory.copy()\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_v[:] = v\n _array_default_neurons_not_refractory[:] = not_refractory\n _array_default_neurons_g[:] = g\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_stateupdater_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n v = _array_default_neurons_v\n not_refractory = _array_default_neurons_not_refractory\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_t = _array_defaultclock_t[0]\n _source_i = _array_default_neurons_i[_idx]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _array_spikemonitor_count[_events - _source_start] += 1\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "spikemonitor_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n w = _array_default_synapses_w[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_v[_idx] = v\n _array_default_neurons_g[_idx] = g\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+17
@@ -0,0 +1,17 @@
|
||||
{
|
||||
"APL_precision": "float32 in separate science-Python process",
|
||||
"Torch_imported_into_Brian": false,
|
||||
"author_precision": "float64",
|
||||
"codegen": "numpy",
|
||||
"packages": {
|
||||
"brian2": "2.5.1",
|
||||
"cython": "0.29.33",
|
||||
"numpy": "1.22.3",
|
||||
"pandas": "1.4.3",
|
||||
"pyarrow": "11.0.0",
|
||||
"scipy": "1.8.1",
|
||||
"sympy": "1.12"
|
||||
},
|
||||
"platform": "Linux-5.15.0-194-generic-x86_64-with-glibc2.35",
|
||||
"python": "3.10.12 (main, Aug 31 2026, 10:18:17) [GCC 11.4.0]"
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
|
||||
[
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n dt = _array_defaultclock_dt[0]\n lastspike = _array_default_neurons_lastspike\n g = _array_default_neurons_g.copy()\n rfc = _array_default_neurons_rfc\n t = _array_defaultclock_t[0]\n v = _array_default_neurons_v.copy()\n not_refractory = _array_default_neurons_not_refractory.copy()\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_v[:] = v\n _array_default_neurons_not_refractory[:] = not_refractory\n _array_default_neurons_g[:] = g\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_stateupdater_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n v = _array_default_neurons_v\n not_refractory = _array_default_neurons_not_refractory\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_t = _array_defaultclock_t[0]\n _source_i = _array_default_neurons_i[_idx]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _array_spikemonitor_count[_events - _source_start] += 1\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "spikemonitor_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n w = _array_default_synapses_w[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_v[_idx] = v\n _array_default_neurons_g[_idx] = g\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+80
@@ -0,0 +1,80 @@
|
||||
{
|
||||
"ae_sha256": "32eb1c42383068ce52701d2139a376ce155ad7072cde019949f8ca2d55492409",
|
||||
"af_sha256": "d72003d98f0f1624b12126eff50bd361c43d888f4a64d90ba9247a58976f1961",
|
||||
"apl_delay_steps": 18,
|
||||
"author_sha256": "fc45837d7122c6ce2a7f3f2f23c515992e4b232aadb919efabb72337fac88e4e",
|
||||
"bundle_hashes": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"candidate_trace_used_as_input": false,
|
||||
"case_hashes": {
|
||||
"requests.npz": "e1864bc4bbe3224126fdc6757552d09d942803c83853faec00e06069c00838ee",
|
||||
"spec.json": "e6a07f3094dd548d6ba784edbe4e0dcd854514b6fd6492cbdc417b39e9063845"
|
||||
},
|
||||
"coefficients_sha256": "bde79d95ef0097b827d5faf4d5658eafc009d8e9fcef1fddd645c953823e3f64",
|
||||
"copied_oracle_sha256": "357a7d3debb5abc34a8714c0233b456547a154d9d5855d28661b4f01019a80ea",
|
||||
"copied_oracle_source": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/oracle_apl.py",
|
||||
"graph_hashes": {
|
||||
"completeness.csv": "fb9033398abb7585ae63472ced9d8c8cab787f69965dc9ce5fa409ab105bc1bc",
|
||||
"connectivity.parquet": "1362c1102b74f5552f4b01fca956574fd6252f749e31493c4a00a1bc9eab00b3",
|
||||
"dst.npy": "ce20f7433f78442c717ad2a7b5394cf4a3b109d990b4be0788040b7b0f4ed150",
|
||||
"edge_id.npy": "49260615ff2b6432ce3dea9ce2c7ab8f83d06c2fb7491e58e08355fcedf86a30",
|
||||
"nodes.npy": "5b511a98e8fbf8d65bbc70b93e75ecae19366f650b7842a45611bfad62ed83dc",
|
||||
"ptr.npy": "fe43420f11e6242a11f8199ae7f097cab4b8a6db181d36f2a46b9e46670acbb4",
|
||||
"signed_raw.npy": "f9884ccb8930b32420b27c69271df78034a8350fe5a5c9b76a63c259268efc09",
|
||||
"src.npy": "bfd625ce690fc21eb0a8b9dede831688ab73b789045ba83ddf4baeefeddf1fc3",
|
||||
"weights.npy": "462839ffc3feb8f6c278044488082b1c8e410e7f23229d6b5e29d1b7042416a1"
|
||||
},
|
||||
"legacy_apl_worker_sha256": "21ceec65fe42581dc55872010e0025d660e80358905f1cf4df1dadf341a3b291",
|
||||
"only_scientific_change": "transport generated graded-APL h before the unchanged end write",
|
||||
"scope": "shared-APL-component closed-loop oracle, not all-components-independent CPU equivalence",
|
||||
"spec": {
|
||||
"apl": {
|
||||
"gain": 0.01,
|
||||
"normalization": 1.0,
|
||||
"tau_ms": 20.0
|
||||
},
|
||||
"apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"apl_delay_steps": 18,
|
||||
"apl_precision": "float32",
|
||||
"budget_root": "/data/digital-drosophila/experiments/phase4ak-apl-timing-validation",
|
||||
"coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
|
||||
"dt_ms": 0.1,
|
||||
"duration_ms": 100.0,
|
||||
"expected_external_events": 113.30283203125,
|
||||
"graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/graphs/full",
|
||||
"kind": "fullgraph",
|
||||
"legacy_apl_worker": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"mode": "physiological",
|
||||
"model": {
|
||||
"dt_ms": 0.1,
|
||||
"membrane_tau_ms": 20.0,
|
||||
"refractory_ms": 2.2,
|
||||
"reset_potential_mv": -52.0,
|
||||
"resting_potential_mv": -52.0,
|
||||
"synaptic_delay_ms": 1.8,
|
||||
"synaptic_tau_ms": 5.0,
|
||||
"threshold_mv": -45.0,
|
||||
"w_syn_mv_per_anatomical_synapse": 0.275
|
||||
},
|
||||
"name": "novel_to_aj-physiological-00-s1073741825",
|
||||
"odor_id": "YSNWHRKJEKWJNY-UHFFFAOYSA-N",
|
||||
"odor_index": 0,
|
||||
"odor_name": "ethyl 3-methylsulfanylpropanoate",
|
||||
"output_budget_bytes": 25769803776,
|
||||
"precision": "float64",
|
||||
"rate_sum_hz": 1133.0283203125,
|
||||
"record_history": false,
|
||||
"science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"seed": 1073741825,
|
||||
"source_panel_row": 6,
|
||||
"source_panel_split": "heldout",
|
||||
"steps": 1000,
|
||||
"target_count": 35,
|
||||
"training": false,
|
||||
"validation_cohort": "novel_to_aj"
|
||||
}
|
||||
}
|
||||
+60
@@ -0,0 +1,60 @@
|
||||
{
|
||||
"APL_SI_conversion": "h.astype(float64) * float64(0.001), then separate float64 g subtraction",
|
||||
"APL_dtype": "float32",
|
||||
"APL_h_units": "mV; gain already applied in float32",
|
||||
"APL_inhibition_file_means": "generated h at the actual closed-loop Brian spike tick, not the delayed applied value",
|
||||
"APL_input": "Brian's own actual global spikes, never candidate spikes or candidate inhibition",
|
||||
"APL_pending_file": "apl-pending-tail.float32.npy",
|
||||
"APL_pending_generated_count": 18,
|
||||
"APL_pending_initial_zero_prefix": 0,
|
||||
"APL_pending_scope": "next D scheduled applications from recorded h plus unconsumed initial zero slots; not future generated decay",
|
||||
"APL_shapes": {
|
||||
"applied": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"drive": [
|
||||
1000,
|
||||
2
|
||||
],
|
||||
"inhibition": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"pending_tail": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"state": [
|
||||
1000,
|
||||
2
|
||||
]
|
||||
},
|
||||
"APL_transport": "applied[t]=generated_h[t-D] for t>=D, positive zero otherwise; separate independent list FIFO",
|
||||
"APL_write_schedule": "end, order=0, after original reset, unconditional raw g write; recorder end/order=1",
|
||||
"apl_delay_steps": 18,
|
||||
"complete_marker": "summary.json complete=true only after worker exit and all checks",
|
||||
"history_recorded": false,
|
||||
"history_shape": [
|
||||
1000,
|
||||
166700
|
||||
],
|
||||
"queue_protocol": "sealed Phase4AF queue_summary; original global edge IDs, including zero-weight/ref-rejected arrivals",
|
||||
"request_columns": [
|
||||
"tick",
|
||||
"neuron_idx",
|
||||
"attempted",
|
||||
"accepted",
|
||||
"rejected"
|
||||
],
|
||||
"state_hash_encoding": "SHA256 of contiguous little-endian raw f64 V/g and i32 ref",
|
||||
"state_hash_file": "tick-state-hashes.jsonl",
|
||||
"state_npz": [
|
||||
"step",
|
||||
"neuron_idx",
|
||||
"counts",
|
||||
"v",
|
||||
"g",
|
||||
"ref"
|
||||
]
|
||||
}
|
||||
+34
@@ -0,0 +1,34 @@
|
||||
{
|
||||
"membrane_tau_ms": {
|
||||
"author": 20.0,
|
||||
"case": 20.0
|
||||
},
|
||||
"refractory_ms": {
|
||||
"author": 2.2,
|
||||
"case": 2.2
|
||||
},
|
||||
"reset_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"resting_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"synaptic_delay_ms": {
|
||||
"author": 1.8,
|
||||
"case": 1.8
|
||||
},
|
||||
"synaptic_tau_ms": {
|
||||
"author": 5.0,
|
||||
"case": 5.0
|
||||
},
|
||||
"threshold_mv": {
|
||||
"author": -45.0,
|
||||
"case": -45.0
|
||||
},
|
||||
"w_syn_mv_per_anatomical_synapse": {
|
||||
"author": 0.275,
|
||||
"case": 0.275
|
||||
}
|
||||
}
|
||||
+15
@@ -0,0 +1,15 @@
|
||||
{
|
||||
"advance_calls": 1000,
|
||||
"forwarding_contract": "sealed AE/AF design",
|
||||
"installations": [
|
||||
"default_synapses_pre_codeobject",
|
||||
"default_synapses_pre_codeobject_1"
|
||||
],
|
||||
"limit": "Current wrapper was not independently rerun without the queue proxy",
|
||||
"new_unwrapped_repeat_performed": false,
|
||||
"original_edge_ids_not_sorted_or_filtered": true,
|
||||
"peek_calls": 1000,
|
||||
"post_threshold_pre_synaptic_guard_observed": true,
|
||||
"same_peek_object_returned": true,
|
||||
"zero_weight_and_refractory_rejected_edges_retained": true
|
||||
}
|
||||
+118
@@ -0,0 +1,118 @@
|
||||
tick,neuron_idx,attempted,accepted,rejected
|
||||
20,7322,1,1,0
|
||||
21,53508,1,1,0
|
||||
24,999,1,1,0
|
||||
25,530,1,1,0
|
||||
31,159,1,1,0
|
||||
37,2029,1,1,0
|
||||
43,530,1,0,1
|
||||
50,522,1,1,0
|
||||
51,1372,1,1,0
|
||||
58,9052,1,1,0
|
||||
73,530,1,1,0
|
||||
78,530,1,0,1
|
||||
81,530,1,0,1
|
||||
95,622,1,1,0
|
||||
114,710,1,1,0
|
||||
115,2029,1,1,0
|
||||
136,79514,1,1,0
|
||||
138,79514,1,0,1
|
||||
150,130753,1,1,0
|
||||
152,130753,1,0,1
|
||||
154,530,1,0,1
|
||||
155,2029,1,1,0
|
||||
157,54264,1,1,0
|
||||
160,54264,1,0,1
|
||||
163,54264,1,0,1
|
||||
172,2029,1,0,1
|
||||
183,7322,1,1,0
|
||||
190,130753,1,1,0
|
||||
195,7322,1,0,1
|
||||
201,97,1,1,0
|
||||
202,530,1,0,1
|
||||
204,9052,1,1,0
|
||||
214,55121,1,1,0
|
||||
220,522,1,1,0
|
||||
234,1011,1,1,0
|
||||
257,530,1,1,0
|
||||
264,700,1,1,0
|
||||
278,6721,1,1,0
|
||||
287,999,1,0,1
|
||||
295,189,1,0,1
|
||||
326,571,1,0,1
|
||||
334,360,1,0,1
|
||||
353,79514,1,1,0
|
||||
366,1372,1,1,0
|
||||
386,189,1,1,0
|
||||
408,1011,1,1,0
|
||||
415,130753,1,0,1
|
||||
423,434,1,1,0
|
||||
430,130257,1,1,0
|
||||
446,79514,1,1,0
|
||||
463,2601,1,0,1
|
||||
469,522,1,1,0
|
||||
479,159,1,1,0
|
||||
481,360,1,1,0
|
||||
511,9052,1,1,0
|
||||
513,571,1,1,0
|
||||
527,54264,1,1,0
|
||||
547,189,1,0,1
|
||||
554,999,1,1,0
|
||||
556,2029,1,1,0
|
||||
556,9052,1,1,0
|
||||
567,4786,1,1,0
|
||||
567,79514,1,1,0
|
||||
568,7680,1,1,0
|
||||
596,1372,1,0,1
|
||||
610,434,1,1,0
|
||||
613,1011,1,1,0
|
||||
629,159,1,0,1
|
||||
643,130753,1,1,0
|
||||
657,1011,1,1,0
|
||||
668,2029,1,1,0
|
||||
672,1011,1,0,1
|
||||
682,1372,1,1,0
|
||||
695,6721,1,1,0
|
||||
700,360,1,0,1
|
||||
704,4624,1,1,0
|
||||
710,9052,1,1,0
|
||||
714,700,1,0,1
|
||||
725,1372,1,1,0
|
||||
725,7680,1,1,0
|
||||
726,6721,1,1,0
|
||||
742,1022,1,0,1
|
||||
750,1011,1,0,1
|
||||
754,189,1,0,1
|
||||
755,4624,1,1,0
|
||||
770,130753,1,0,1
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795,97,1,1,0
|
||||
814,189,1,1,0
|
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817,360,1,1,0
|
||||
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|
||||
831,434,1,0,1
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|
||||
842,530,1,0,1
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||||
844,54264,1,1,0
|
||||
846,530,1,1,0
|
||||
847,97,1,1,0
|
||||
886,522,1,1,0
|
||||
890,189,1,1,0
|
||||
896,1372,1,0,1
|
||||
896,133666,1,0,1
|
||||
897,1011,1,1,0
|
||||
902,1011,1,0,1
|
||||
906,530,1,1,0
|
||||
909,97,1,1,0
|
||||
915,1927,1,1,0
|
||||
950,4786,1,1,0
|
||||
952,360,1,1,0
|
||||
957,7322,1,0,1
|
||||
964,189,1,0,1
|
||||
965,522,1,1,0
|
||||
974,2029,1,1,0
|
||||
977,79514,1,1,0
|
||||
982,97,1,0,1
|
||||
989,54264,1,1,0
|
||||
992,54264,1,0,1
|
||||
994,79514,1,0,1
|
||||
998,189,1,1,0
|
||||
|
+9
@@ -0,0 +1,9 @@
|
||||
{
|
||||
"apl_delay_steps": 18,
|
||||
"backend": "oracle",
|
||||
"dynamics_copied_or_reimplemented": false,
|
||||
"old_module_scientific_globals_changed": false,
|
||||
"scope": "Unchanged AJ runtime called with new case/output/build arguments; not a new numerical model",
|
||||
"sealed_runtime": "/data/digital-drosophila/models/male-cns-lif/apl-timing-lab-v1/oracle_timing.py",
|
||||
"sealed_runtime_sha256": "39d8c47c94bc2faddf016864a43e7715907fb987f56f7b27098060a88851f6be"
|
||||
}
|
||||
+11
@@ -0,0 +1,11 @@
|
||||
{
|
||||
"schedule": [
|
||||
"start",
|
||||
"groups",
|
||||
"thresholds",
|
||||
"synapses",
|
||||
"resets",
|
||||
"end"
|
||||
],
|
||||
"summary": " object | part of | Clock dt | when | order | active\n---------------------------------------------------+-------------------------------+----------------------+-------------------+---------+-------\ndefault_neurons_stateupdater (StateUpdater) | default_neurons (NeuronGroup) | 100. us (every step) | groups | 0 | yes \noracle_common_requests (NetworkOperation) | -- | 100. us (every step) | before_thresholds | 0 | yes \ndefault_neurons_spike_thresholder (Thresholder) | default_neurons (NeuronGroup) | 100. us (every step) | thresholds | 0 | yes \nspikemonitor (SpikeMonitor) | spikemonitor (SpikeMonitor) | 100. us (every step) | thresholds | 1 | yes \ndefault_synapses_pre (SynapticPathway) | default_synapses (Synapses) | 100. us (every step) | synapses | -1 | yes \ndefault_neurons_spike_resetter (Resetter) | default_neurons (NeuronGroup) | 100. us (every step) | resets | 0 | yes \noracle_legacy_apl_unconditional (NetworkOperation) | -- | 100. us (every step) | end | 0 | yes \noracle_after_apl_record (NetworkOperation) | -- | 100. us (every step) | end | 1 | yes \nzz_apl_queue_installer (QueueInstaller) | -- | 100. us (every step) | end | 1000000 | yes "
|
||||
}
|
||||
+51
@@ -0,0 +1,51 @@
|
||||
{
|
||||
"APL_applied_sha256": "757329fd1d760d3f2dc5e73fb2686a94ba78c5a255db7f4ec9918f8d8ba700f8",
|
||||
"APL_fast_edges_zeroed": 5845,
|
||||
"APL_finite_sequence_partition_exact": true,
|
||||
"APL_pending_tail_sha256": "0bbf355ce1ddb2d2ddfdd73a0ca2fba59dd479584403a6cf8aa0b8d2336935f9",
|
||||
"APL_precision": "float32",
|
||||
"APL_timing_audit_sha256": "251dd25f317e022dfd8ba8709e0c1b5c468401c3ed7beeedecde9f8cfe246a63",
|
||||
"APL_transport_shift_exact": true,
|
||||
"APL_worker_exit_status": 0,
|
||||
"APL_worker_ticks": 1000,
|
||||
"apl_delay_steps": 18,
|
||||
"apl_fast_edges_zeroed": 5845,
|
||||
"applicable_requests": 80,
|
||||
"backend": "shared-APL-component closed-loop Brian2 oracle",
|
||||
"candidate_trace_used_as_input": false,
|
||||
"complete": true,
|
||||
"completed_ticks": 1000,
|
||||
"edges": 25582938,
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"events_sha256": "2815973438d5de7c169ed651101dec8136fe5bde549324010204ca7b7d694bac",
|
||||
"future_generated_decay_tail_included": false,
|
||||
"history_recorded": false,
|
||||
"independent_CPU_all_components_claim": false,
|
||||
"initial_zero_prefix": 0,
|
||||
"kc_targets_present": 4064,
|
||||
"name": "novel_to_aj-physiological-00-s1073741825",
|
||||
"no_poi": true,
|
||||
"no_training": true,
|
||||
"nodes": 166700,
|
||||
"output_budget_bytes": 25769803776,
|
||||
"output_bytes_before_summary": 3389301301,
|
||||
"pass_all": true,
|
||||
"pass_all_scope": "Oracle construction, protocol and internal self-checks only; candidate comparison is a separate gate",
|
||||
"pending_generated_count": 18,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_tail_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"precision": "float64",
|
||||
"queue_sha256": "894ab50fa8a60ebe4ccf54c46b7778488b83605bb08c9dcb438981f9901c0a0c",
|
||||
"ref_rejected_requests": 37,
|
||||
"requests": 117,
|
||||
"scope": "Only this fixed trajectory; legacy Torch APL is a shared numerical component, not an independent CPU APL implementation",
|
||||
"single_continuous_run": true,
|
||||
"source_and_inputs_unchanged": true,
|
||||
"spikes": 29986,
|
||||
"state_hashes_sha256": "166a663b84ff3281babc50b7ebd7d356f6de1eed734b72abfd545b785b9a063c",
|
||||
"steps": 1000,
|
||||
"weights_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b"
|
||||
}
|
||||
+12
@@ -0,0 +1,12 @@
|
||||
{
|
||||
"KC_targets_in_case": 4064,
|
||||
"base_graph_files_modified": false,
|
||||
"base_weight_raw_bytes_sha256": "a8c19cde743bd456bcb2e988d504f805b6943d6ceb97cd241d6e1e472ab5a591",
|
||||
"count": 5845,
|
||||
"effective_weights_file_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b",
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"fullgraph_required_mask_count": 5845,
|
||||
"graded_targets": "only KC identities present in this LIF case",
|
||||
"ordered_original_edge_id_sha256": "78d88b017b336f9c72a230680a39a9c4e74fedeff6fbb7b9c8641f30cb15e72b",
|
||||
"rule": "zero +0 all existing fast edges whose source GLOBAL neuron is in apl_globals; no graph edge removal"
|
||||
}
|
||||
+39
@@ -0,0 +1,39 @@
|
||||
{
|
||||
"APL_generation_steps_after_window": 0,
|
||||
"apl_delay_steps": 18,
|
||||
"applied_generated_rows": 982,
|
||||
"brain_steps_after_window": 0,
|
||||
"brain_tail_advanced": false,
|
||||
"closed_loop_branch_integrals_claimed_equal": false,
|
||||
"delay_implementation": "independent list FIFO; no candidate or timing_queue imports",
|
||||
"final_apl_state_float32": [
|
||||
149.37657165527344,
|
||||
165.87535095214844
|
||||
],
|
||||
"final_apl_state_nonzero": true,
|
||||
"final_apl_state_u32_bits": [
|
||||
1125474407,
|
||||
1126555671
|
||||
],
|
||||
"finite_generated_sequence_partition_exact": true,
|
||||
"future_apl_decay_or_feedback_generated": false,
|
||||
"future_generated_decay_tail_included": false,
|
||||
"generated_rows": 1000,
|
||||
"initial_zero_prefix": 0,
|
||||
"meaning": "Tail contains only already generated h and any remaining initial-zero padding; never a complete future closed-loop or decay tail",
|
||||
"pending_application_tick_start": 1000,
|
||||
"pending_application_tick_stop_exclusive": 1018,
|
||||
"pending_file_sha256": "fdc9d9439f0a7ced8c05728bd893861e1a383b4ff2d0e8338817e80c75b0dc69",
|
||||
"pending_generated_count": 18,
|
||||
"pending_generated_tick_start": 982,
|
||||
"pending_generated_tick_stop_exclusive": 1000,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_raw_sha256": "0ecc528803aceb25ca9247f2d596e3d7aec2ee750fa285cd21a2798e53a8b577",
|
||||
"pending_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"positive_zero_warmup_exact": true,
|
||||
"steps": 1000,
|
||||
"transport_shift_exact": true
|
||||
}
|
||||
+56
@@ -0,0 +1,56 @@
|
||||
{
|
||||
"command": [
|
||||
"/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"-B",
|
||||
"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"--bundle-dir",
|
||||
"/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"--dt-ms",
|
||||
"0.1"
|
||||
],
|
||||
"handshake": {
|
||||
"array_sha256": {
|
||||
"apl_globals.npy": "979ef88dff30d41168ce9b377a006ccb3cd034b2dce86d54923ca0f4b87cb6a6",
|
||||
"input_matrix.npy": "528a5f6f5ffe424f323c5a44695db4a7cf32570709832eff2f37f49e85c92c3e",
|
||||
"kc_globals.npy": "9e990d10a63b0f74cd7bbbdc5369082f24d5246487af944ba289bc6bf48d4b75",
|
||||
"output_matrix.npy": "0dcf02cdb7836ab72da32ac47f5682ca33e25f63a8a662a8452d4ea9d46babb9"
|
||||
},
|
||||
"decay_f32_bits": "3f7eb923",
|
||||
"dt_ms": 0.1,
|
||||
"environment": {
|
||||
"CUBLAS_WORKSPACE_CONFIG": null,
|
||||
"cuda": "13.0",
|
||||
"cuda_matmul_allow_tf32": false,
|
||||
"cudnn": 92400,
|
||||
"cudnn_allow_tf32": true,
|
||||
"cudnn_benchmark": false,
|
||||
"cudnn_deterministic": false,
|
||||
"deterministic_algorithms": false,
|
||||
"device_capability": [
|
||||
8,
|
||||
9
|
||||
],
|
||||
"device_index": 0,
|
||||
"device_name": "NVIDIA GeForce RTX 4090",
|
||||
"float32_matmul_precision": "highest",
|
||||
"numpy": "2.2.6",
|
||||
"precision_configuration_changed_by_component": false,
|
||||
"torch": "2.14.0+cu130"
|
||||
},
|
||||
"files_sha256": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"gain_f32_bits": "3c23d70a",
|
||||
"h_units": "legacy mV",
|
||||
"initial_state": "float32 zeros",
|
||||
"n_apl": 2,
|
||||
"n_kc": 4064,
|
||||
"n_neurons": 166700,
|
||||
"ok": true,
|
||||
"operator_sequence": "state.mul_(decay32); drive=mv(I32,spikes32); state.add_(drive); h=matmul(state,O32)*gain32",
|
||||
"protocol": "phase4ag-apl-v1"
|
||||
}
|
||||
}
|
||||
+72
@@ -0,0 +1,72 @@
|
||||
{
|
||||
"c0": -0.00025935108198051754,
|
||||
"cg": 0.004937935295309027,
|
||||
"cv": 0.9950124791926823,
|
||||
"gd": 0.9801986733067553,
|
||||
"metadata": {
|
||||
"constant_values_are_double": true,
|
||||
"float32_execution_note": "Brian NumPy scalar/array promotion and operation order must be matched separately; double coefficients alone do not assert float64 intermediate array arithmetic.",
|
||||
"g_expression": "gd * old_g",
|
||||
"hex": {
|
||||
"c0": "-0x1.0ff306a505980p-12",
|
||||
"cg": "0x1.439cce9a65d5bp-8",
|
||||
"cv": "0x1.fd7246927d28bp-1",
|
||||
"gd": "0x1.f5dc99badec5bp-1",
|
||||
"reset": "-0x1.a9fbe76c8b43ap-5",
|
||||
"seed_volt": "-0x1.6872b020c49bap-5",
|
||||
"threshold": "-0x1.70a3d70a3d70ap-5"
|
||||
},
|
||||
"names": {
|
||||
"c0": "_lio_8",
|
||||
"cg": "_lio_9",
|
||||
"cv": "_lio_10",
|
||||
"gd": "_lio_2"
|
||||
},
|
||||
"provenance": {
|
||||
"c0": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_8",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"cg": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_9",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"cv": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_10",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"gd": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_2",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"reset": {
|
||||
"code_object": "default_neurons_spike_resetter_codeobject_1",
|
||||
"name": "v_rst",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"seed_volt": {
|
||||
"source": "common request interface: unchanged v_th + 1 mV"
|
||||
},
|
||||
"threshold": {
|
||||
"code_object": "default_neurons_spike_thresholder_codeobject_1",
|
||||
"name": "v_th",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
}
|
||||
},
|
||||
"units": "SI volts and dimensionless coefficients",
|
||||
"voltage_expression": "c0 + ((cg * old_g) + (cv * old_v))"
|
||||
},
|
||||
"reset": -0.052000000000000005,
|
||||
"seed_volt": -0.044,
|
||||
"threshold": -0.045
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
|
||||
[
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n dt = _array_defaultclock_dt[0]\n lastspike = _array_default_neurons_lastspike\n not_refractory = _array_default_neurons_not_refractory.copy()\n t = _array_defaultclock_t[0]\n g = _array_default_neurons_g.copy()\n v = _array_default_neurons_v.copy()\n rfc = _array_default_neurons_rfc\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_not_refractory[:] = not_refractory\n _array_default_neurons_g[:] = g\n _array_default_neurons_v[:] = v\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_stateupdater_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n not_refractory = _array_default_neurons_not_refractory\n v = _array_default_neurons_v\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_t = _array_defaultclock_t[0]\n _source_i = _array_default_neurons_i[_idx]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _array_spikemonitor_count[_events - _source_start] += 1\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "spikemonitor_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n w = _array_default_synapses_w[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_g[_idx] = g\n _array_default_neurons_v[_idx] = v\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+17
@@ -0,0 +1,17 @@
|
||||
{
|
||||
"APL_precision": "float32 in separate science-Python process",
|
||||
"Torch_imported_into_Brian": false,
|
||||
"author_precision": "float64",
|
||||
"codegen": "numpy",
|
||||
"packages": {
|
||||
"brian2": "2.5.1",
|
||||
"cython": "0.29.33",
|
||||
"numpy": "1.22.3",
|
||||
"pandas": "1.4.3",
|
||||
"pyarrow": "11.0.0",
|
||||
"scipy": "1.8.1",
|
||||
"sympy": "1.12"
|
||||
},
|
||||
"platform": "Linux-5.15.0-194-generic-x86_64-with-glibc2.35",
|
||||
"python": "3.10.12 (main, Aug 31 2026, 10:18:17) [GCC 11.4.0]"
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
|
||||
[
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n dt = _array_defaultclock_dt[0]\n lastspike = _array_default_neurons_lastspike\n not_refractory = _array_default_neurons_not_refractory.copy()\n t = _array_defaultclock_t[0]\n g = _array_default_neurons_g.copy()\n v = _array_default_neurons_v.copy()\n rfc = _array_default_neurons_rfc\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_not_refractory[:] = not_refractory\n _array_default_neurons_g[:] = g\n _array_default_neurons_v[:] = v\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_stateupdater_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n not_refractory = _array_default_neurons_not_refractory\n v = _array_default_neurons_v\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_t = _array_defaultclock_t[0]\n _source_i = _array_default_neurons_i[_idx]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _array_spikemonitor_count[_events - _source_start] += 1\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "spikemonitor_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n w = _array_default_synapses_w[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_g[_idx] = g\n _array_default_neurons_v[_idx] = v\nbefore_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+80
@@ -0,0 +1,80 @@
|
||||
{
|
||||
"ae_sha256": "32eb1c42383068ce52701d2139a376ce155ad7072cde019949f8ca2d55492409",
|
||||
"af_sha256": "d72003d98f0f1624b12126eff50bd361c43d888f4a64d90ba9247a58976f1961",
|
||||
"apl_delay_steps": 18,
|
||||
"author_sha256": "fc45837d7122c6ce2a7f3f2f23c515992e4b232aadb919efabb72337fac88e4e",
|
||||
"bundle_hashes": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"candidate_trace_used_as_input": false,
|
||||
"case_hashes": {
|
||||
"requests.npz": "829bb96de6a7137e33f3b17ba12163a973471068a5777188c958ce4687100585",
|
||||
"spec.json": "23b4e96982040551cc88333dad82d8bd77275726132134ece80e560f8aae988d"
|
||||
},
|
||||
"coefficients_sha256": "bde79d95ef0097b827d5faf4d5658eafc009d8e9fcef1fddd645c953823e3f64",
|
||||
"copied_oracle_sha256": "357a7d3debb5abc34a8714c0233b456547a154d9d5855d28661b4f01019a80ea",
|
||||
"copied_oracle_source": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/oracle_apl.py",
|
||||
"graph_hashes": {
|
||||
"completeness.csv": "fb9033398abb7585ae63472ced9d8c8cab787f69965dc9ce5fa409ab105bc1bc",
|
||||
"connectivity.parquet": "1362c1102b74f5552f4b01fca956574fd6252f749e31493c4a00a1bc9eab00b3",
|
||||
"dst.npy": "ce20f7433f78442c717ad2a7b5394cf4a3b109d990b4be0788040b7b0f4ed150",
|
||||
"edge_id.npy": "49260615ff2b6432ce3dea9ce2c7ab8f83d06c2fb7491e58e08355fcedf86a30",
|
||||
"nodes.npy": "5b511a98e8fbf8d65bbc70b93e75ecae19366f650b7842a45611bfad62ed83dc",
|
||||
"ptr.npy": "fe43420f11e6242a11f8199ae7f097cab4b8a6db181d36f2a46b9e46670acbb4",
|
||||
"signed_raw.npy": "f9884ccb8930b32420b27c69271df78034a8350fe5a5c9b76a63c259268efc09",
|
||||
"src.npy": "bfd625ce690fc21eb0a8b9dede831688ab73b789045ba83ddf4baeefeddf1fc3",
|
||||
"weights.npy": "462839ffc3feb8f6c278044488082b1c8e410e7f23229d6b5e29d1b7042416a1"
|
||||
},
|
||||
"legacy_apl_worker_sha256": "21ceec65fe42581dc55872010e0025d660e80358905f1cf4df1dadf341a3b291",
|
||||
"only_scientific_change": "transport generated graded-APL h before the unchanged end write",
|
||||
"scope": "shared-APL-component closed-loop oracle, not all-components-independent CPU equivalence",
|
||||
"spec": {
|
||||
"apl": {
|
||||
"gain": 0.01,
|
||||
"normalization": 1.0,
|
||||
"tau_ms": 20.0
|
||||
},
|
||||
"apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"apl_delay_steps": 18,
|
||||
"apl_precision": "float32",
|
||||
"budget_root": "/data/digital-drosophila/experiments/phase4ak-apl-timing-validation",
|
||||
"coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
|
||||
"dt_ms": 0.1,
|
||||
"duration_ms": 100.0,
|
||||
"expected_external_events": 102.24431762695312,
|
||||
"graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/graphs/full",
|
||||
"kind": "fullgraph",
|
||||
"legacy_apl_worker": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"mode": "matched_energy",
|
||||
"model": {
|
||||
"dt_ms": 0.1,
|
||||
"membrane_tau_ms": 20.0,
|
||||
"refractory_ms": 2.2,
|
||||
"reset_potential_mv": -52.0,
|
||||
"resting_potential_mv": -52.0,
|
||||
"synaptic_delay_ms": 1.8,
|
||||
"synaptic_tau_ms": 5.0,
|
||||
"threshold_mv": -45.0,
|
||||
"w_syn_mv_per_anatomical_synapse": 0.275
|
||||
},
|
||||
"name": "seed_validation-matched_energy-00-s1073741825",
|
||||
"odor_id": "OMSUIQOIVADKIM-RXMQYKEDSA-N",
|
||||
"odor_index": 0,
|
||||
"odor_name": "ethyl (R)-(-)-3-hydroxybutanoate",
|
||||
"output_budget_bytes": 25769803776,
|
||||
"precision": "float64",
|
||||
"rate_sum_hz": 1022.4431762695312,
|
||||
"record_history": false,
|
||||
"science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"seed": 1073741825,
|
||||
"source_panel_row": 0,
|
||||
"source_panel_split": "calibration",
|
||||
"steps": 1000,
|
||||
"target_count": 48,
|
||||
"training": false,
|
||||
"validation_cohort": "seed_validation"
|
||||
}
|
||||
}
|
||||
+60
@@ -0,0 +1,60 @@
|
||||
{
|
||||
"APL_SI_conversion": "h.astype(float64) * float64(0.001), then separate float64 g subtraction",
|
||||
"APL_dtype": "float32",
|
||||
"APL_h_units": "mV; gain already applied in float32",
|
||||
"APL_inhibition_file_means": "generated h at the actual closed-loop Brian spike tick, not the delayed applied value",
|
||||
"APL_input": "Brian's own actual global spikes, never candidate spikes or candidate inhibition",
|
||||
"APL_pending_file": "apl-pending-tail.float32.npy",
|
||||
"APL_pending_generated_count": 18,
|
||||
"APL_pending_initial_zero_prefix": 0,
|
||||
"APL_pending_scope": "next D scheduled applications from recorded h plus unconsumed initial zero slots; not future generated decay",
|
||||
"APL_shapes": {
|
||||
"applied": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"drive": [
|
||||
1000,
|
||||
2
|
||||
],
|
||||
"inhibition": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"pending_tail": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"state": [
|
||||
1000,
|
||||
2
|
||||
]
|
||||
},
|
||||
"APL_transport": "applied[t]=generated_h[t-D] for t>=D, positive zero otherwise; separate independent list FIFO",
|
||||
"APL_write_schedule": "end, order=0, after original reset, unconditional raw g write; recorder end/order=1",
|
||||
"apl_delay_steps": 18,
|
||||
"complete_marker": "summary.json complete=true only after worker exit and all checks",
|
||||
"history_recorded": false,
|
||||
"history_shape": [
|
||||
1000,
|
||||
166700
|
||||
],
|
||||
"queue_protocol": "sealed Phase4AF queue_summary; original global edge IDs, including zero-weight/ref-rejected arrivals",
|
||||
"request_columns": [
|
||||
"tick",
|
||||
"neuron_idx",
|
||||
"attempted",
|
||||
"accepted",
|
||||
"rejected"
|
||||
],
|
||||
"state_hash_encoding": "SHA256 of contiguous little-endian raw f64 V/g and i32 ref",
|
||||
"state_hash_file": "tick-state-hashes.jsonl",
|
||||
"state_npz": [
|
||||
"step",
|
||||
"neuron_idx",
|
||||
"counts",
|
||||
"v",
|
||||
"g",
|
||||
"ref"
|
||||
]
|
||||
}
|
||||
+34
@@ -0,0 +1,34 @@
|
||||
{
|
||||
"membrane_tau_ms": {
|
||||
"author": 20.0,
|
||||
"case": 20.0
|
||||
},
|
||||
"refractory_ms": {
|
||||
"author": 2.2,
|
||||
"case": 2.2
|
||||
},
|
||||
"reset_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"resting_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"synaptic_delay_ms": {
|
||||
"author": 1.8,
|
||||
"case": 1.8
|
||||
},
|
||||
"synaptic_tau_ms": {
|
||||
"author": 5.0,
|
||||
"case": 5.0
|
||||
},
|
||||
"threshold_mv": {
|
||||
"author": -45.0,
|
||||
"case": -45.0
|
||||
},
|
||||
"w_syn_mv_per_anatomical_synapse": {
|
||||
"author": 0.275,
|
||||
"case": 0.275
|
||||
}
|
||||
}
|
||||
+15
@@ -0,0 +1,15 @@
|
||||
{
|
||||
"advance_calls": 1000,
|
||||
"forwarding_contract": "sealed AE/AF design",
|
||||
"installations": [
|
||||
"default_synapses_pre_codeobject",
|
||||
"default_synapses_pre_codeobject_1"
|
||||
],
|
||||
"limit": "Current wrapper was not independently rerun without the queue proxy",
|
||||
"new_unwrapped_repeat_performed": false,
|
||||
"original_edge_ids_not_sorted_or_filtered": true,
|
||||
"peek_calls": 1000,
|
||||
"post_threshold_pre_synaptic_guard_observed": true,
|
||||
"same_peek_object_returned": true,
|
||||
"zero_weight_and_refractory_rejected_edges_retained": true
|
||||
}
|
||||
+108
@@ -0,0 +1,108 @@
|
||||
tick,neuron_idx,attempted,accepted,rejected
|
||||
7,522,1,1,0
|
||||
15,2943,1,1,0
|
||||
15,7781,1,1,0
|
||||
17,2927,1,1,0
|
||||
31,3252,1,1,0
|
||||
37,159,1,1,0
|
||||
37,5519,1,1,0
|
||||
56,522,1,1,0
|
||||
69,2535,1,1,0
|
||||
69,9370,1,1,0
|
||||
78,6842,1,1,0
|
||||
83,10769,1,1,0
|
||||
113,12644,1,1,0
|
||||
114,3345,1,1,0
|
||||
118,522,1,0,1
|
||||
133,130472,1,1,0
|
||||
146,4173,1,1,0
|
||||
149,21802,1,1,0
|
||||
156,130497,1,1,0
|
||||
178,2010,1,0,1
|
||||
215,14839,1,0,1
|
||||
236,6842,1,1,0
|
||||
238,5519,1,0,1
|
||||
302,360,1,1,0
|
||||
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|
||||
337,2586,1,1,0
|
||||
342,130753,1,1,0
|
||||
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|
||||
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|
||||
378,999,1,1,0
|
||||
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|
||||
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|
||||
395,360,1,0,1
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
434,522,1,0,1
|
||||
461,10769,1,1,0
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
529,360,1,1,0
|
||||
538,7781,1,1,0
|
||||
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|
||||
547,7781,1,0,1
|
||||
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|
||||
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|
||||
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|
||||
596,1514,1,1,0
|
||||
596,9975,1,1,0
|
||||
604,2029,1,0,1
|
||||
605,2347,1,1,0
|
||||
609,1191,1,1,0
|
||||
610,10769,1,1,0
|
||||
613,131226,1,0,1
|
||||
616,522,1,1,0
|
||||
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|
||||
646,2535,1,0,1
|
||||
650,2010,1,0,1
|
||||
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|
||||
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|
||||
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|
||||
667,10769,1,1,0
|
||||
698,1514,1,1,0
|
||||
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|
||||
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|
||||
727,522,1,1,0
|
||||
727,6842,1,0,1
|
||||
745,2010,1,1,0
|
||||
746,360,1,0,1
|
||||
754,3252,1,0,1
|
||||
763,130497,1,1,0
|
||||
764,1890,1,0,1
|
||||
772,3161,1,1,0
|
||||
782,9975,1,0,1
|
||||
794,2029,1,1,0
|
||||
815,130753,1,1,0
|
||||
816,1514,1,1,0
|
||||
816,4505,1,1,0
|
||||
823,14839,1,1,0
|
||||
834,522,1,1,0
|
||||
846,2601,1,1,0
|
||||
855,999,1,1,0
|
||||
859,9370,1,1,0
|
||||
863,522,1,1,0
|
||||
866,360,1,1,0
|
||||
876,6842,1,1,0
|
||||
878,9975,1,1,0
|
||||
898,522,1,1,0
|
||||
906,331,1,0,1
|
||||
906,2010,1,1,0
|
||||
921,5519,1,1,0
|
||||
931,522,1,1,0
|
||||
940,360,1,1,0
|
||||
942,130753,1,1,0
|
||||
971,1890,1,1,0
|
||||
972,2010,1,0,1
|
||||
995,130753,1,1,0
|
||||
996,10769,1,1,0
|
||||
|
+9
@@ -0,0 +1,9 @@
|
||||
{
|
||||
"apl_delay_steps": 18,
|
||||
"backend": "oracle",
|
||||
"dynamics_copied_or_reimplemented": false,
|
||||
"old_module_scientific_globals_changed": false,
|
||||
"scope": "Unchanged AJ runtime called with new case/output/build arguments; not a new numerical model",
|
||||
"sealed_runtime": "/data/digital-drosophila/models/male-cns-lif/apl-timing-lab-v1/oracle_timing.py",
|
||||
"sealed_runtime_sha256": "39d8c47c94bc2faddf016864a43e7715907fb987f56f7b27098060a88851f6be"
|
||||
}
|
||||
+11
@@ -0,0 +1,11 @@
|
||||
{
|
||||
"schedule": [
|
||||
"start",
|
||||
"groups",
|
||||
"thresholds",
|
||||
"synapses",
|
||||
"resets",
|
||||
"end"
|
||||
],
|
||||
"summary": " object | part of | Clock dt | when | order | active\n---------------------------------------------------+-------------------------------+----------------------+-------------------+---------+-------\ndefault_neurons_stateupdater (StateUpdater) | default_neurons (NeuronGroup) | 100. us (every step) | groups | 0 | yes \noracle_common_requests (NetworkOperation) | -- | 100. us (every step) | before_thresholds | 0 | yes \ndefault_neurons_spike_thresholder (Thresholder) | default_neurons (NeuronGroup) | 100. us (every step) | thresholds | 0 | yes \nspikemonitor (SpikeMonitor) | spikemonitor (SpikeMonitor) | 100. us (every step) | thresholds | 1 | yes \ndefault_synapses_pre (SynapticPathway) | default_synapses (Synapses) | 100. us (every step) | synapses | -1 | yes \ndefault_neurons_spike_resetter (Resetter) | default_neurons (NeuronGroup) | 100. us (every step) | resets | 0 | yes \noracle_legacy_apl_unconditional (NetworkOperation) | -- | 100. us (every step) | end | 0 | yes \noracle_after_apl_record (NetworkOperation) | -- | 100. us (every step) | end | 1 | yes \nzz_apl_queue_installer (QueueInstaller) | -- | 100. us (every step) | end | 1000000 | yes "
|
||||
}
|
||||
+51
@@ -0,0 +1,51 @@
|
||||
{
|
||||
"APL_applied_sha256": "d17e1c743093b083d47ca78438e56f3097b5634da887f83987aec477b9ec4274",
|
||||
"APL_fast_edges_zeroed": 5845,
|
||||
"APL_finite_sequence_partition_exact": true,
|
||||
"APL_pending_tail_sha256": "fdc9d9439f0a7ced8c05728bd893861e1a383b4ff2d0e8338817e80c75b0dc69",
|
||||
"APL_precision": "float32",
|
||||
"APL_timing_audit_sha256": "ef1061951869c394d606f79f2d362f67e75a06955e737f0a4b9a7cb7eedd6ce1",
|
||||
"APL_transport_shift_exact": true,
|
||||
"APL_worker_exit_status": 0,
|
||||
"APL_worker_ticks": 1000,
|
||||
"apl_delay_steps": 18,
|
||||
"apl_fast_edges_zeroed": 5845,
|
||||
"applicable_requests": 78,
|
||||
"backend": "shared-APL-component closed-loop Brian2 oracle",
|
||||
"candidate_trace_used_as_input": false,
|
||||
"complete": true,
|
||||
"completed_ticks": 1000,
|
||||
"edges": 25582938,
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"events_sha256": "57d328e7f223d47f189bc7ffe1b13a6da0022e160f5ad631c711f4099d56dd82",
|
||||
"future_generated_decay_tail_included": false,
|
||||
"history_recorded": false,
|
||||
"independent_CPU_all_components_claim": false,
|
||||
"initial_zero_prefix": 0,
|
||||
"kc_targets_present": 4064,
|
||||
"name": "seed_validation-matched_energy-00-s1073741825",
|
||||
"no_poi": true,
|
||||
"no_training": true,
|
||||
"nodes": 166700,
|
||||
"output_budget_bytes": 25769803776,
|
||||
"output_bytes_before_summary": 626492038,
|
||||
"pass_all": true,
|
||||
"pass_all_scope": "Oracle construction, protocol and internal self-checks only; candidate comparison is a separate gate",
|
||||
"pending_generated_count": 18,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_tail_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"precision": "float64",
|
||||
"queue_sha256": "90826f935c270e4d56d4310aad43d17124322129add4f096eabfa3c352bb2336",
|
||||
"ref_rejected_requests": 29,
|
||||
"requests": 107,
|
||||
"scope": "Only this fixed trajectory; legacy Torch APL is a shared numerical component, not an independent CPU APL implementation",
|
||||
"single_continuous_run": true,
|
||||
"source_and_inputs_unchanged": true,
|
||||
"spikes": 30982,
|
||||
"state_hashes_sha256": "b0386ffb7f5aaac324e058daed6dddb87979001dbb172a9673cf5392d35ae212",
|
||||
"steps": 1000,
|
||||
"weights_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b"
|
||||
}
|
||||
+12
@@ -0,0 +1,12 @@
|
||||
{
|
||||
"KC_targets_in_case": 4064,
|
||||
"base_graph_files_modified": false,
|
||||
"base_weight_raw_bytes_sha256": "a8c19cde743bd456bcb2e988d504f805b6943d6ceb97cd241d6e1e472ab5a591",
|
||||
"count": 5845,
|
||||
"effective_weights_file_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b",
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"fullgraph_required_mask_count": 5845,
|
||||
"graded_targets": "only KC identities present in this LIF case",
|
||||
"ordered_original_edge_id_sha256": "78d88b017b336f9c72a230680a39a9c4e74fedeff6fbb7b9c8641f30cb15e72b",
|
||||
"rule": "zero +0 all existing fast edges whose source GLOBAL neuron is in apl_globals; no graph edge removal"
|
||||
}
|
||||
+39
@@ -0,0 +1,39 @@
|
||||
{
|
||||
"APL_generation_steps_after_window": 0,
|
||||
"apl_delay_steps": 18,
|
||||
"applied_generated_rows": 982,
|
||||
"brain_steps_after_window": 0,
|
||||
"brain_tail_advanced": false,
|
||||
"closed_loop_branch_integrals_claimed_equal": false,
|
||||
"delay_implementation": "independent list FIFO; no candidate or timing_queue imports",
|
||||
"final_apl_state_float32": [
|
||||
151.74046325683594,
|
||||
169.58856201171875
|
||||
],
|
||||
"final_apl_state_nonzero": true,
|
||||
"final_apl_state_u32_bits": [
|
||||
1125629327,
|
||||
1126799020
|
||||
],
|
||||
"finite_generated_sequence_partition_exact": true,
|
||||
"future_apl_decay_or_feedback_generated": false,
|
||||
"future_generated_decay_tail_included": false,
|
||||
"generated_rows": 1000,
|
||||
"initial_zero_prefix": 0,
|
||||
"meaning": "Tail contains only already generated h and any remaining initial-zero padding; never a complete future closed-loop or decay tail",
|
||||
"pending_application_tick_start": 1000,
|
||||
"pending_application_tick_stop_exclusive": 1018,
|
||||
"pending_file_sha256": "fc1e2d8ffa426d4118a7544129323c5f7523e9df3e298a60922ca0ecabe7c18f",
|
||||
"pending_generated_count": 18,
|
||||
"pending_generated_tick_start": 982,
|
||||
"pending_generated_tick_stop_exclusive": 1000,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_raw_sha256": "c1ebb91163861d3b2d35e180f72f76695703839b46228796f817b2acb56e8bb5",
|
||||
"pending_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"positive_zero_warmup_exact": true,
|
||||
"steps": 1000,
|
||||
"transport_shift_exact": true
|
||||
}
|
||||
+56
@@ -0,0 +1,56 @@
|
||||
{
|
||||
"command": [
|
||||
"/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"-B",
|
||||
"/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"--bundle-dir",
|
||||
"/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"--dt-ms",
|
||||
"0.1"
|
||||
],
|
||||
"handshake": {
|
||||
"array_sha256": {
|
||||
"apl_globals.npy": "979ef88dff30d41168ce9b377a006ccb3cd034b2dce86d54923ca0f4b87cb6a6",
|
||||
"input_matrix.npy": "528a5f6f5ffe424f323c5a44695db4a7cf32570709832eff2f37f49e85c92c3e",
|
||||
"kc_globals.npy": "9e990d10a63b0f74cd7bbbdc5369082f24d5246487af944ba289bc6bf48d4b75",
|
||||
"output_matrix.npy": "0dcf02cdb7836ab72da32ac47f5682ca33e25f63a8a662a8452d4ea9d46babb9"
|
||||
},
|
||||
"decay_f32_bits": "3f7eb923",
|
||||
"dt_ms": 0.1,
|
||||
"environment": {
|
||||
"CUBLAS_WORKSPACE_CONFIG": null,
|
||||
"cuda": "13.0",
|
||||
"cuda_matmul_allow_tf32": false,
|
||||
"cudnn": 92400,
|
||||
"cudnn_allow_tf32": true,
|
||||
"cudnn_benchmark": false,
|
||||
"cudnn_deterministic": false,
|
||||
"deterministic_algorithms": false,
|
||||
"device_capability": [
|
||||
8,
|
||||
9
|
||||
],
|
||||
"device_index": 0,
|
||||
"device_name": "NVIDIA GeForce RTX 4090",
|
||||
"float32_matmul_precision": "highest",
|
||||
"numpy": "2.2.6",
|
||||
"precision_configuration_changed_by_component": false,
|
||||
"torch": "2.14.0+cu130"
|
||||
},
|
||||
"files_sha256": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"gain_f32_bits": "3c23d70a",
|
||||
"h_units": "legacy mV",
|
||||
"initial_state": "float32 zeros",
|
||||
"n_apl": 2,
|
||||
"n_kc": 4064,
|
||||
"n_neurons": 166700,
|
||||
"ok": true,
|
||||
"operator_sequence": "state.mul_(decay32); drive=mv(I32,spikes32); state.add_(drive); h=matmul(state,O32)*gain32",
|
||||
"protocol": "phase4ag-apl-v1"
|
||||
}
|
||||
}
|
||||
+72
@@ -0,0 +1,72 @@
|
||||
{
|
||||
"c0": -0.00025935108198051754,
|
||||
"cg": 0.004937935295309027,
|
||||
"cv": 0.9950124791926823,
|
||||
"gd": 0.9801986733067553,
|
||||
"metadata": {
|
||||
"constant_values_are_double": true,
|
||||
"float32_execution_note": "Brian NumPy scalar/array promotion and operation order must be matched separately; double coefficients alone do not assert float64 intermediate array arithmetic.",
|
||||
"g_expression": "gd * old_g",
|
||||
"hex": {
|
||||
"c0": "-0x1.0ff306a505980p-12",
|
||||
"cg": "0x1.439cce9a65d5bp-8",
|
||||
"cv": "0x1.fd7246927d28bp-1",
|
||||
"gd": "0x1.f5dc99badec5bp-1",
|
||||
"reset": "-0x1.a9fbe76c8b43ap-5",
|
||||
"seed_volt": "-0x1.6872b020c49bap-5",
|
||||
"threshold": "-0x1.70a3d70a3d70ap-5"
|
||||
},
|
||||
"names": {
|
||||
"c0": "_lio_8",
|
||||
"cg": "_lio_9",
|
||||
"cv": "_lio_10",
|
||||
"gd": "_lio_2"
|
||||
},
|
||||
"provenance": {
|
||||
"c0": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_8",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"cg": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_9",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"cv": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_10",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"gd": {
|
||||
"code_object": "default_neurons_stateupdater_codeobject_1",
|
||||
"name": "_lio_2",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"reset": {
|
||||
"code_object": "default_neurons_spike_resetter_codeobject_1",
|
||||
"name": "v_rst",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
},
|
||||
"seed_volt": {
|
||||
"source": "common request interface: unchanged v_th + 1 mV"
|
||||
},
|
||||
"threshold": {
|
||||
"code_object": "default_neurons_spike_thresholder_codeobject_1",
|
||||
"name": "v_th",
|
||||
"namespace_dtype": "float64",
|
||||
"source": "CodeObject.namespace"
|
||||
}
|
||||
},
|
||||
"units": "SI volts and dimensionless coefficients",
|
||||
"voltage_expression": "c0 + ((cg * old_g) + (cv * old_v))"
|
||||
},
|
||||
"reset": -0.052000000000000005,
|
||||
"seed_volt": -0.044,
|
||||
"threshold": -0.045
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
|
||||
[
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n lastspike = _array_default_neurons_lastspike\n rfc = _array_default_neurons_rfc\n g = _array_default_neurons_g.copy()\n not_refractory = _array_default_neurons_not_refractory.copy()\n t = _array_defaultclock_t[0]\n v = _array_default_neurons_v.copy()\n dt = _array_defaultclock_dt[0]\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_v[:] = v\n _array_default_neurons_g[:] = g\n _array_default_neurons_not_refractory[:] = not_refractory\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_stateupdater_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n v = _array_default_neurons_v\n not_refractory = _array_default_neurons_not_refractory\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_i = _array_default_neurons_i[_idx]\n _source_t = _array_defaultclock_t[0]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _array_spikemonitor_count[_events - _source_start] += 1\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "spikemonitor_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n w = _array_default_synapses_w[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_v[_idx] = v\n _array_default_neurons_g[_idx] = g\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+17
@@ -0,0 +1,17 @@
|
||||
{
|
||||
"APL_precision": "float32 in separate science-Python process",
|
||||
"Torch_imported_into_Brian": false,
|
||||
"author_precision": "float64",
|
||||
"codegen": "numpy",
|
||||
"packages": {
|
||||
"brian2": "2.5.1",
|
||||
"cython": "0.29.33",
|
||||
"numpy": "1.22.3",
|
||||
"pandas": "1.4.3",
|
||||
"pyarrow": "11.0.0",
|
||||
"scipy": "1.8.1",
|
||||
"sympy": "1.12"
|
||||
},
|
||||
"platform": "Linux-5.15.0-194-generic-x86_64-with-glibc2.35",
|
||||
"python": "3.10.12 (main, Aug 31 2026, 10:18:17) [GCC 11.4.0]"
|
||||
}
|
||||
+124
@@ -0,0 +1,124 @@
|
||||
[
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_neurons",
|
||||
"order": 0,
|
||||
"type": "NeuronGroup",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "default_synapses",
|
||||
"order": 0,
|
||||
"type": "Synapses",
|
||||
"when": "start"
|
||||
},
|
||||
{
|
||||
"abstract_code": "not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n_g = g*exp(-dt*int(not_refractory)/tau)\n_v = g*tau*(-exp(dt*int(not_refractory)/t_mbr) + exp(dt*int(not_refractory)/tau))*exp(-dt*int(not_refractory)/t_mbr)*exp(-dt*int(not_refractory)/tau)/(t_mbr - tau) + v*exp(-dt*int(not_refractory)/t_mbr) + v_0 - v_0*exp(-dt*int(not_refractory)/t_mbr)\ng = _g\nv = _v",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n dt = _array_defaultclock_dt[0]\n _lio_1 = (- dt) / tau\n _lio_2 = exp(_lio_1)\n _lio_3 = tau / (t_mbr - tau)\n _lio_4 = dt / t_mbr\n _lio_5 = dt / tau\n _lio_6 = (- dt) / t_mbr\n _lio_7 = v_0 - v_0\n _lio_8 = v_0 - (v_0 * exp(_lio_6))\n _lio_9 = ((_lio_3 * ((- exp(_lio_4)) + exp(_lio_5))) * exp(_lio_6)) * exp(_lio_1)\n _lio_10 = exp(_lio_6)\n # vector code\n _vectorisation_idx = LazyArange(N)\n lastspike = _array_default_neurons_lastspike\n rfc = _array_default_neurons_rfc\n g = _array_default_neurons_g.copy()\n not_refractory = _array_default_neurons_not_refractory.copy()\n t = _array_defaultclock_t[0]\n v = _array_default_neurons_v.copy()\n dt = _array_defaultclock_dt[0]\n not_refractory = timestep(t - lastspike, dt) >= timestep(rfc, dt)\n _g = _numpy.where(not_refractory, _lio_2 * g, g)\n _v = _numpy.where(not_refractory, _lio_8 + ((_lio_9 * g) + (_lio_10 * v)), _lio_7 + v)\n g[not_refractory] = _g[not_refractory]\n v[not_refractory] = _v[not_refractory]\n _array_default_neurons_v[:] = v\n _array_default_neurons_g[:] = g\n _array_default_neurons_not_refractory[:] = not_refractory\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_stateupdater_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_stateupdater",
|
||||
"order": 0,
|
||||
"type": "StateUpdater",
|
||||
"when": "groups"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_common_requests",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "before_thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_cond = (v > v_th) and not_refractory",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n numpy_True = _numpy.bool_(True)\n numpy_False = _numpy.bool_(False)\n # scalar code\n _vectorisation_idx = 1\n # vector code\n _vectorisation_idx = LazyArange(N)\n v = _array_default_neurons_v\n not_refractory = _array_default_neurons_not_refractory\n _cond = (v > v_th) & not_refractory\n if _cond is True or _cond is numpy_True:\n _events = _numpy.arange(N)\n elif _cond is False or _cond is numpy_False:\n _events = _numpy.array([])\n else:\n _events, = _cond.nonzero()\n _array_default_neurons__spikespace[-1] = len(_events)\n _array_default_neurons__spikespace[:len(_events)] = _events\n # Set the neuron to refractory\n _array_default_neurons_not_refractory[_events] = False\n _array_default_neurons_lastspike[_events] = _array_defaultclock_t[0]\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _array_default_neurons__spikespace[-1] = 0\n",
|
||||
"name": "default_neurons_spike_thresholder_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_thresholder",
|
||||
"order": 0,
|
||||
"type": "Thresholder",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "_to_record_i = _source_i\n_to_record_t = _source_t",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _n_events = _array_default_neurons__spikespace[-1]\n if _n_events > 0:\n _events = _array_default_neurons__spikespace[:_n_events]\n # Take subgroups into account\n if _source_start != 0 or _source_stop != _source_N:\n _events = _events[(_events >= _source_start) & (_events < _source_stop)]\n _n_events = len(_events)\n if _n_events > 0:\n _vectorisation_idx = 1\n _curlen = _array_spikemonitor_N[0]\n _newlen = _curlen + _n_events\n _owner.resize(_newlen)\n _array_spikemonitor_N[0] = _newlen\n _vectorisation_idx = _events\n _idx = _events\n _source_i = _array_default_neurons_i[_idx]\n _source_t = _array_defaultclock_t[0]\n _to_record_i = _source_i\n _to_record_t = _source_t\n _dynamic_array_spikemonitor_i[_curlen:_newlen] = _to_record_i\n _dynamic_array_spikemonitor_t[_curlen:_newlen] = _to_record_t\n _array_spikemonitor_count[_events - _source_start] += 1\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "spikemonitor_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "spikemonitor",
|
||||
"order": 1,
|
||||
"type": "SpikeMonitor",
|
||||
"when": "thresholds"
|
||||
},
|
||||
{
|
||||
"abstract_code": "g += w\n",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.initialise_queue()\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _owner.push_spikes()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_push_spikes"
|
||||
},
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n _spiking_synapses = _queue.peek()\n if len(_spiking_synapses):\n # scalar code\n # vector code\n _idx = _spiking_synapses\n _vectorisation_idx = _idx\n # Abstract code: g += w\n _postsynaptic_idx = _array_default_synapses__synaptic_post[_idx]\n w = _array_default_synapses_w[_idx]\n not_refractory = _array_default_neurons_not_refractory[_postsynaptic_idx]\n _numpy.add.at(_array_default_neurons_g, _postsynaptic_idx[not_refractory], w[not_refractory])\n # Advance the spike queue\n _queue.advance()\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_synapses_pre_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_synapses_pre",
|
||||
"order": -1,
|
||||
"type": "SynapticPathway",
|
||||
"when": "synapses"
|
||||
},
|
||||
{
|
||||
"abstract_code": "v = v_rst; w = 0; g = 0 * mV",
|
||||
"active": true,
|
||||
"code_objects": [
|
||||
{
|
||||
"generated_code": "before_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\nrun:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # scalar code\n _vectorisation_idx = 1\n w = 0\n # vector code\n _idx = _array_default_neurons__spikespace[:_array_default_neurons__spikespace[-1]]\n _vectorisation_idx = _idx\n v = v_rst\n g = 0.0\n _array_default_neurons_v[_idx] = v\n _array_default_neurons_g[_idx] = g\nafter_run:\n import numpy as _numpy\n from brian2.codegen.runtime.numpy_rt.numpy_rt import LazyArange\n # EMPTY_CODE_BLOCK -- overwrite in child template\n",
|
||||
"name": "default_neurons_spike_resetter_codeobject_1"
|
||||
}
|
||||
],
|
||||
"name": "default_neurons_spike_resetter",
|
||||
"order": 0,
|
||||
"type": "Resetter",
|
||||
"when": "resets"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_legacy_apl_unconditional",
|
||||
"order": 0,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "oracle_after_apl_record",
|
||||
"order": 1,
|
||||
"type": "NetworkOperation",
|
||||
"when": "end"
|
||||
},
|
||||
{
|
||||
"active": true,
|
||||
"code_objects": [],
|
||||
"name": "zz_apl_queue_installer",
|
||||
"order": 1000000,
|
||||
"type": "QueueInstaller",
|
||||
"when": "end"
|
||||
}
|
||||
]
|
||||
+80
@@ -0,0 +1,80 @@
|
||||
{
|
||||
"ae_sha256": "32eb1c42383068ce52701d2139a376ce155ad7072cde019949f8ca2d55492409",
|
||||
"af_sha256": "d72003d98f0f1624b12126eff50bd361c43d888f4a64d90ba9247a58976f1961",
|
||||
"apl_delay_steps": 18,
|
||||
"author_sha256": "fc45837d7122c6ce2a7f3f2f23c515992e4b232aadb919efabb72337fac88e4e",
|
||||
"bundle_hashes": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"candidate_trace_used_as_input": false,
|
||||
"case_hashes": {
|
||||
"requests.npz": "003a6f6306787b67391735c41dd8b14c689beaaab3ab71a5e9afb376d3cbb091",
|
||||
"spec.json": "ebffa677b41e06cb776a987a496a0577bdda135cf3c067ca8017b038ff3fc5c4"
|
||||
},
|
||||
"coefficients_sha256": "bde79d95ef0097b827d5faf4d5658eafc009d8e9fcef1fddd645c953823e3f64",
|
||||
"copied_oracle_sha256": "357a7d3debb5abc34a8714c0233b456547a154d9d5855d28661b4f01019a80ea",
|
||||
"copied_oracle_source": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/oracle_apl.py",
|
||||
"graph_hashes": {
|
||||
"completeness.csv": "fb9033398abb7585ae63472ced9d8c8cab787f69965dc9ce5fa409ab105bc1bc",
|
||||
"connectivity.parquet": "1362c1102b74f5552f4b01fca956574fd6252f749e31493c4a00a1bc9eab00b3",
|
||||
"dst.npy": "ce20f7433f78442c717ad2a7b5394cf4a3b109d990b4be0788040b7b0f4ed150",
|
||||
"edge_id.npy": "49260615ff2b6432ce3dea9ce2c7ab8f83d06c2fb7491e58e08355fcedf86a30",
|
||||
"nodes.npy": "5b511a98e8fbf8d65bbc70b93e75ecae19366f650b7842a45611bfad62ed83dc",
|
||||
"ptr.npy": "fe43420f11e6242a11f8199ae7f097cab4b8a6db181d36f2a46b9e46670acbb4",
|
||||
"signed_raw.npy": "f9884ccb8930b32420b27c69271df78034a8350fe5a5c9b76a63c259268efc09",
|
||||
"src.npy": "bfd625ce690fc21eb0a8b9dede831688ab73b789045ba83ddf4baeefeddf1fc3",
|
||||
"weights.npy": "462839ffc3feb8f6c278044488082b1c8e410e7f23229d6b5e29d1b7042416a1"
|
||||
},
|
||||
"legacy_apl_worker_sha256": "21ceec65fe42581dc55872010e0025d660e80358905f1cf4df1dadf341a3b291",
|
||||
"only_scientific_change": "transport generated graded-APL h before the unchanged end write",
|
||||
"scope": "shared-APL-component closed-loop oracle, not all-components-independent CPU equivalence",
|
||||
"spec": {
|
||||
"apl": {
|
||||
"gain": 0.01,
|
||||
"normalization": 1.0,
|
||||
"tau_ms": 20.0
|
||||
},
|
||||
"apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"apl_delay_steps": 18,
|
||||
"apl_precision": "float32",
|
||||
"budget_root": "/data/digital-drosophila/experiments/phase4ak-apl-timing-validation",
|
||||
"coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
|
||||
"dt_ms": 0.1,
|
||||
"duration_ms": 100.0,
|
||||
"expected_external_events": 105.90211181640625,
|
||||
"graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/graphs/full",
|
||||
"kind": "fullgraph",
|
||||
"legacy_apl_worker": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"mode": "physiological",
|
||||
"model": {
|
||||
"dt_ms": 0.1,
|
||||
"membrane_tau_ms": 20.0,
|
||||
"refractory_ms": 2.2,
|
||||
"reset_potential_mv": -52.0,
|
||||
"resting_potential_mv": -52.0,
|
||||
"synaptic_delay_ms": 1.8,
|
||||
"synaptic_tau_ms": 5.0,
|
||||
"threshold_mv": -45.0,
|
||||
"w_syn_mv_per_anatomical_synapse": 0.275
|
||||
},
|
||||
"name": "seed_validation-physiological-00-s1073741825",
|
||||
"odor_id": "OMSUIQOIVADKIM-RXMQYKEDSA-N",
|
||||
"odor_index": 0,
|
||||
"odor_name": "ethyl (R)-(-)-3-hydroxybutanoate",
|
||||
"output_budget_bytes": 25769803776,
|
||||
"precision": "float64",
|
||||
"rate_sum_hz": 1059.0211181640625,
|
||||
"record_history": false,
|
||||
"science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"seed": 1073741825,
|
||||
"source_panel_row": 0,
|
||||
"source_panel_split": "calibration",
|
||||
"steps": 1000,
|
||||
"target_count": 48,
|
||||
"training": false,
|
||||
"validation_cohort": "seed_validation"
|
||||
}
|
||||
}
|
||||
+60
@@ -0,0 +1,60 @@
|
||||
{
|
||||
"APL_SI_conversion": "h.astype(float64) * float64(0.001), then separate float64 g subtraction",
|
||||
"APL_dtype": "float32",
|
||||
"APL_h_units": "mV; gain already applied in float32",
|
||||
"APL_inhibition_file_means": "generated h at the actual closed-loop Brian spike tick, not the delayed applied value",
|
||||
"APL_input": "Brian's own actual global spikes, never candidate spikes or candidate inhibition",
|
||||
"APL_pending_file": "apl-pending-tail.float32.npy",
|
||||
"APL_pending_generated_count": 18,
|
||||
"APL_pending_initial_zero_prefix": 0,
|
||||
"APL_pending_scope": "next D scheduled applications from recorded h plus unconsumed initial zero slots; not future generated decay",
|
||||
"APL_shapes": {
|
||||
"applied": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"drive": [
|
||||
1000,
|
||||
2
|
||||
],
|
||||
"inhibition": [
|
||||
1000,
|
||||
4064
|
||||
],
|
||||
"pending_tail": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"state": [
|
||||
1000,
|
||||
2
|
||||
]
|
||||
},
|
||||
"APL_transport": "applied[t]=generated_h[t-D] for t>=D, positive zero otherwise; separate independent list FIFO",
|
||||
"APL_write_schedule": "end, order=0, after original reset, unconditional raw g write; recorder end/order=1",
|
||||
"apl_delay_steps": 18,
|
||||
"complete_marker": "summary.json complete=true only after worker exit and all checks",
|
||||
"history_recorded": false,
|
||||
"history_shape": [
|
||||
1000,
|
||||
166700
|
||||
],
|
||||
"queue_protocol": "sealed Phase4AF queue_summary; original global edge IDs, including zero-weight/ref-rejected arrivals",
|
||||
"request_columns": [
|
||||
"tick",
|
||||
"neuron_idx",
|
||||
"attempted",
|
||||
"accepted",
|
||||
"rejected"
|
||||
],
|
||||
"state_hash_encoding": "SHA256 of contiguous little-endian raw f64 V/g and i32 ref",
|
||||
"state_hash_file": "tick-state-hashes.jsonl",
|
||||
"state_npz": [
|
||||
"step",
|
||||
"neuron_idx",
|
||||
"counts",
|
||||
"v",
|
||||
"g",
|
||||
"ref"
|
||||
]
|
||||
}
|
||||
+34
@@ -0,0 +1,34 @@
|
||||
{
|
||||
"membrane_tau_ms": {
|
||||
"author": 20.0,
|
||||
"case": 20.0
|
||||
},
|
||||
"refractory_ms": {
|
||||
"author": 2.2,
|
||||
"case": 2.2
|
||||
},
|
||||
"reset_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"resting_potential_mv": {
|
||||
"author": -52.0,
|
||||
"case": -52.0
|
||||
},
|
||||
"synaptic_delay_ms": {
|
||||
"author": 1.8,
|
||||
"case": 1.8
|
||||
},
|
||||
"synaptic_tau_ms": {
|
||||
"author": 5.0,
|
||||
"case": 5.0
|
||||
},
|
||||
"threshold_mv": {
|
||||
"author": -45.0,
|
||||
"case": -45.0
|
||||
},
|
||||
"w_syn_mv_per_anatomical_synapse": {
|
||||
"author": 0.275,
|
||||
"case": 0.275
|
||||
}
|
||||
}
|
||||
+15
@@ -0,0 +1,15 @@
|
||||
{
|
||||
"advance_calls": 1000,
|
||||
"forwarding_contract": "sealed AE/AF design",
|
||||
"installations": [
|
||||
"default_synapses_pre_codeobject",
|
||||
"default_synapses_pre_codeobject_1"
|
||||
],
|
||||
"limit": "Current wrapper was not independently rerun without the queue proxy",
|
||||
"new_unwrapped_repeat_performed": false,
|
||||
"original_edge_ids_not_sorted_or_filtered": true,
|
||||
"peek_calls": 1000,
|
||||
"post_threshold_pre_synaptic_guard_observed": true,
|
||||
"same_peek_object_returned": true,
|
||||
"zero_weight_and_refractory_rejected_edges_retained": true
|
||||
}
|
||||
+111
@@ -0,0 +1,111 @@
|
||||
tick,neuron_idx,attempted,accepted,rejected
|
||||
7,522,1,1,0
|
||||
15,2943,1,1,0
|
||||
15,7781,1,1,0
|
||||
17,2927,1,1,0
|
||||
31,3252,1,1,0
|
||||
37,159,1,1,0
|
||||
37,5519,1,1,0
|
||||
56,522,1,1,0
|
||||
69,2535,1,1,0
|
||||
69,9370,1,1,0
|
||||
74,1927,1,1,0
|
||||
78,6842,1,1,0
|
||||
83,10769,1,1,0
|
||||
113,12644,1,1,0
|
||||
114,3345,1,1,0
|
||||
118,522,1,0,1
|
||||
133,130472,1,1,0
|
||||
146,4173,1,1,0
|
||||
149,21802,1,1,0
|
||||
156,130497,1,1,0
|
||||
178,2010,1,0,1
|
||||
215,14839,1,0,1
|
||||
236,6842,1,1,0
|
||||
238,5519,1,0,1
|
||||
302,360,1,1,0
|
||||
325,1011,1,1,0
|
||||
337,2586,1,1,0
|
||||
342,130753,1,1,0
|
||||
351,1514,1,0,1
|
||||
361,1514,1,1,0
|
||||
374,1927,1,1,0
|
||||
378,999,1,1,0
|
||||
384,130753,1,1,0
|
||||
385,360,1,1,0
|
||||
395,360,1,0,1
|
||||
399,4311,1,0,1
|
||||
404,8504,1,1,0
|
||||
405,131226,1,0,1
|
||||
414,999,1,1,0
|
||||
414,2927,1,1,0
|
||||
434,522,1,1,0
|
||||
461,10769,1,0,1
|
||||
475,360,1,0,1
|
||||
489,1514,1,0,1
|
||||
497,130753,1,0,1
|
||||
506,999,1,0,1
|
||||
507,12644,1,1,0
|
||||
513,3161,1,1,0
|
||||
516,522,1,1,0
|
||||
518,12644,1,0,1
|
||||
521,21802,1,1,0
|
||||
528,130472,1,1,0
|
||||
529,360,1,1,0
|
||||
538,7781,1,1,0
|
||||
541,2970,1,1,0
|
||||
547,7781,1,0,1
|
||||
549,131226,1,1,0
|
||||
550,131226,1,0,1
|
||||
551,360,1,1,0
|
||||
596,1514,1,1,0
|
||||
596,9975,1,1,0
|
||||
604,2029,1,1,0
|
||||
605,2347,1,1,0
|
||||
609,1191,1,1,0
|
||||
610,10769,1,0,1
|
||||
613,131226,1,0,1
|
||||
616,522,1,1,0
|
||||
617,522,1,0,1
|
||||
646,2535,1,1,0
|
||||
650,2010,1,0,1
|
||||
654,2231,1,1,0
|
||||
655,522,1,1,0
|
||||
663,360,1,1,0
|
||||
667,10769,1,1,0
|
||||
698,1514,1,1,0
|
||||
704,12644,1,1,0
|
||||
716,1514,1,0,1
|
||||
727,522,1,1,0
|
||||
727,6842,1,1,0
|
||||
745,2010,1,1,0
|
||||
746,360,1,1,0
|
||||
754,3252,1,1,0
|
||||
763,130497,1,0,1
|
||||
764,1890,1,1,0
|
||||
772,3161,1,1,0
|
||||
782,9975,1,1,0
|
||||
794,2029,1,0,1
|
||||
815,130753,1,0,1
|
||||
816,1514,1,1,0
|
||||
816,4505,1,0,1
|
||||
823,14839,1,1,0
|
||||
834,522,1,1,0
|
||||
846,2601,1,1,0
|
||||
855,999,1,1,0
|
||||
859,9370,1,1,0
|
||||
863,522,1,1,0
|
||||
866,360,1,1,0
|
||||
876,6842,1,1,0
|
||||
878,9975,1,1,0
|
||||
898,522,1,1,0
|
||||
906,331,1,0,1
|
||||
906,2010,1,0,1
|
||||
921,5519,1,0,1
|
||||
931,522,1,1,0
|
||||
940,360,1,0,1
|
||||
942,130753,1,1,0
|
||||
971,1890,1,1,0
|
||||
972,2010,1,0,1
|
||||
995,130753,1,0,1
|
||||
996,10769,1,1,0
|
||||
|
+9
@@ -0,0 +1,9 @@
|
||||
{
|
||||
"apl_delay_steps": 18,
|
||||
"backend": "oracle",
|
||||
"dynamics_copied_or_reimplemented": false,
|
||||
"old_module_scientific_globals_changed": false,
|
||||
"scope": "Unchanged AJ runtime called with new case/output/build arguments; not a new numerical model",
|
||||
"sealed_runtime": "/data/digital-drosophila/models/male-cns-lif/apl-timing-lab-v1/oracle_timing.py",
|
||||
"sealed_runtime_sha256": "39d8c47c94bc2faddf016864a43e7715907fb987f56f7b27098060a88851f6be"
|
||||
}
|
||||
+11
@@ -0,0 +1,11 @@
|
||||
{
|
||||
"schedule": [
|
||||
"start",
|
||||
"groups",
|
||||
"thresholds",
|
||||
"synapses",
|
||||
"resets",
|
||||
"end"
|
||||
],
|
||||
"summary": " object | part of | Clock dt | when | order | active\n---------------------------------------------------+-------------------------------+----------------------+-------------------+---------+-------\ndefault_neurons_stateupdater (StateUpdater) | default_neurons (NeuronGroup) | 100. us (every step) | groups | 0 | yes \noracle_common_requests (NetworkOperation) | -- | 100. us (every step) | before_thresholds | 0 | yes \ndefault_neurons_spike_thresholder (Thresholder) | default_neurons (NeuronGroup) | 100. us (every step) | thresholds | 0 | yes \nspikemonitor (SpikeMonitor) | spikemonitor (SpikeMonitor) | 100. us (every step) | thresholds | 1 | yes \ndefault_synapses_pre (SynapticPathway) | default_synapses (Synapses) | 100. us (every step) | synapses | -1 | yes \ndefault_neurons_spike_resetter (Resetter) | default_neurons (NeuronGroup) | 100. us (every step) | resets | 0 | yes \noracle_legacy_apl_unconditional (NetworkOperation) | -- | 100. us (every step) | end | 0 | yes \noracle_after_apl_record (NetworkOperation) | -- | 100. us (every step) | end | 1 | yes \nzz_apl_queue_installer (QueueInstaller) | -- | 100. us (every step) | end | 1000000 | yes "
|
||||
}
|
||||
+51
@@ -0,0 +1,51 @@
|
||||
{
|
||||
"APL_applied_sha256": "b3a535bc095db2464a75560ed11f336a9db8e843c08fd7681a1b9759b624ad8e",
|
||||
"APL_fast_edges_zeroed": 5845,
|
||||
"APL_finite_sequence_partition_exact": true,
|
||||
"APL_pending_tail_sha256": "fc1e2d8ffa426d4118a7544129323c5f7523e9df3e298a60922ca0ecabe7c18f",
|
||||
"APL_precision": "float32",
|
||||
"APL_timing_audit_sha256": "c94e1d8a3a3760cf1926f105c41487e7f6fa5a68b3a4170857328ae9519af78d",
|
||||
"APL_transport_shift_exact": true,
|
||||
"APL_worker_exit_status": 0,
|
||||
"APL_worker_ticks": 1000,
|
||||
"apl_delay_steps": 18,
|
||||
"apl_fast_edges_zeroed": 5845,
|
||||
"applicable_requests": 79,
|
||||
"backend": "shared-APL-component closed-loop Brian2 oracle",
|
||||
"candidate_trace_used_as_input": false,
|
||||
"complete": true,
|
||||
"completed_ticks": 1000,
|
||||
"edges": 25582938,
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"events_sha256": "4eebd71c427d662a98759276cce7ec4a16ad0d66c9cbef7130fee3acdca8748b",
|
||||
"future_generated_decay_tail_included": false,
|
||||
"history_recorded": false,
|
||||
"independent_CPU_all_components_claim": false,
|
||||
"initial_zero_prefix": 0,
|
||||
"kc_targets_present": 4064,
|
||||
"name": "seed_validation-physiological-00-s1073741825",
|
||||
"no_poi": true,
|
||||
"no_training": true,
|
||||
"nodes": 166700,
|
||||
"output_budget_bytes": 25769803776,
|
||||
"output_bytes_before_summary": 349877277,
|
||||
"pass_all": true,
|
||||
"pass_all_scope": "Oracle construction, protocol and internal self-checks only; candidate comparison is a separate gate",
|
||||
"pending_generated_count": 18,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_tail_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"precision": "float64",
|
||||
"queue_sha256": "ea81d2d07626aed2ae1096da17a1b4163d3568dc54438409c3ac35f81a7d395f",
|
||||
"ref_rejected_requests": 31,
|
||||
"requests": 110,
|
||||
"scope": "Only this fixed trajectory; legacy Torch APL is a shared numerical component, not an independent CPU APL implementation",
|
||||
"single_continuous_run": true,
|
||||
"source_and_inputs_unchanged": true,
|
||||
"spikes": 30876,
|
||||
"state_hashes_sha256": "b06d86d7560da6c0222e9ea82dc172faf94aec38950456d47a8bdc40acfbf3ad",
|
||||
"steps": 1000,
|
||||
"weights_sha256": "ac433da4b0ac3cdc20c526d99a7158c3dc2298b62c10784f9dcd7db1f089214b"
|
||||
}
|
||||
Reference in New Issue
Block a user