Seal Phase 4AH conditional KC drive audit and source accounting

2026-09-30 09:59:18 +08:00
parent ff91a74193
commit 9437bbff79
118 changed files with 53775 additions and 9 deletions
@@ -0,0 +1,187 @@
+{
+  "neurons": 166700,
+  "groups": {
+    "KC": 4064,
+    "APL": 2,
+    "ALPN": 686,
+    "MBON": 97,
+    "anatomical_DAN": 340,
+    "dopamine_annotation_only": 52,
+    "other": 160143,
+    "unclassified": 1316
+  },
+  "group_order": [
+    "KC",
+    "APL",
+    "ALPN",
+    "MBON",
+    "anatomical_DAN",
+    "dopamine_annotation_only",
+    "other",
+    "unclassified"
+  ],
+  "all_neurons_assigned_once": true,
+  "labels_index": "global neuron_idx, identical to canonical row index",
+  "identity_conflicts_present": false,
+  "pass_all": true,
+  "pass_all_scope": "schema, complete disjoint accounting and no conflicting exact identities; not biological validation",
+  "flags": {
+    "annotation_DPM": 2,
+    "metadata_dopamine": 392,
+    "annotation_DAN": 340,
+    "identity_conflict": 0,
+    "multiple_exact_group_hits": 0,
+    "no_anatomical_annotation": 1316,
+    "DAN_name_prefix_without_DAN_class": 0,
+    "metadata_dopamine_not_annotation_DAN": 54,
+    "annotation_DAN_not_metadata_dopamine": 2,
+    "has_raw_ground_truth": 85484
+  },
+  "flag_counts_by_group": {
+    "annotation_DPM": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 0,
+      "dopamine_annotation_only": 0,
+      "other": 2,
+      "unclassified": 0
+    },
+    "metadata_dopamine": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 338,
+      "dopamine_annotation_only": 52,
+      "other": 2,
+      "unclassified": 0
+    },
+    "annotation_DAN": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 340,
+      "dopamine_annotation_only": 0,
+      "other": 0,
+      "unclassified": 0
+    },
+    "identity_conflict": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 0,
+      "dopamine_annotation_only": 0,
+      "other": 0,
+      "unclassified": 0
+    },
+    "multiple_exact_group_hits": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 0,
+      "dopamine_annotation_only": 0,
+      "other": 0,
+      "unclassified": 0
+    },
+    "no_anatomical_annotation": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 0,
+      "dopamine_annotation_only": 0,
+      "other": 0,
+      "unclassified": 1316
+    },
+    "DAN_name_prefix_without_DAN_class": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 0,
+      "dopamine_annotation_only": 0,
+      "other": 0,
+      "unclassified": 0
+    },
+    "metadata_dopamine_not_annotation_DAN": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 0,
+      "dopamine_annotation_only": 52,
+      "other": 2,
+      "unclassified": 0
+    },
+    "annotation_DAN_not_metadata_dopamine": {
+      "KC": 0,
+      "APL": 0,
+      "ALPN": 0,
+      "MBON": 0,
+      "anatomical_DAN": 2,
+      "dopamine_annotation_only": 0,
+      "other": 0,
+      "unclassified": 0
+    },
+    "has_raw_ground_truth": {
+      "KC": 0,
+      "APL": 2,
+      "ALPN": 573,
+      "MBON": 65,
+      "anatomical_DAN": 338,
+      "dopamine_annotation_only": 42,
+      "other": 84464,
+      "unclassified": 0
+    }
+  },
+  "DPM_neuron_idx": [
+    1618,
+    2403
+  ],
+  "identity_conflict_neuron_idx": [],
+  "uncertain_DAN_prefix_neuron_idx": [],
+  "definitions": {
+    "KC": "annotation_class exactly Kenyon_Cell",
+    "APL": "annotation_type exactly APL",
+    "ALPN": "annotation_class exactly ALPN; annotation_class olfactory is NOT included",
+    "MBON": "annotation_class exactly MBON",
+    "anatomical_DAN": "annotation_class exactly DAN, no exact identity conflict; not inferred from NT or PAM/PPL1 prefix",
+    "dopamine_annotation_only": "normalized neurotransmitter=dopamine, no named exact group, no DPM; transmitter-evidence diagnostic, NOT DAN",
+    "other": "remaining annotated neurons, explicitly including non-conflicting annotation_type DPM",
+    "unclassified": "conflicting exact identity, no anatomical class/type evidence, or only uncertain DAN-name hint without class/NT evidence"
+  },
+  "uncertainty_policy": {
+    "explicit_unknown_tokens_casefolded": [
+      "",
+      "unknown",
+      "unclear",
+      "unclassified"
+    ],
+    "PAM_PPL1_DAN_prefix_never_assigns_identity": true,
+    "transmitter_role_and_anatomical_identity_are_separate": true,
+    "DPM_retained_as_other_with_explicit_flag": true,
+    "missing_ground_truth_is_not_filled_or_guessed": true,
+    "other_does_not_mean_known_function": true
+  },
+  "provenance": {
+    "metadata_path_contract": "context.META; caller must verify its preregistered SHA-256 before loading",
+    "metadata_expected_sha256_from_AG_r2": "922af16846a065c3dbfca7c11146b83ca217fcbd7392edc745f444a04eae8c63",
+    "frozen_rules_path": "/data/digital-drosophila/models/male-cns-lif/transmitter-audit-v1/transmitter_roles_v1.py",
+    "frozen_rules_sha256": "76ba0cae6c5db417ec030456797f7935216c6877bd339d5e435133a0061e3930",
+    "frozen_sidecar_path": "/data/digital-drosophila/experiments/phase4x-transmitter-provenance/roles/neuron-evidence-axes.parquet",
+    "frozen_sidecar_sha256": "8b51d12d84d66cdca66aeb7d052a24e520b9c28f462bd6bf87f37dda85c33284",
+    "frozen_MB_DAN_mapping_path": "/data/digital-drosophila/experiments/phase4h-dopamine-plasticity/mappings/dan-to-mbon-confirmed.parquet",
+    "frozen_MB_DAN_mapping_used_to_assign_identity": false,
+    "file_hash_verified_by_this_pure_function": false,
+    "differences_from_4X_reporting": "ALPN separated from broader olfactory class; DPM grouped other with flag; absent/conflicting identity explicitly unclassified"
+  },
+  "source_graph_changed": false,
+  "simulation_executed": false,
+  "heldout_dynamic_access": false,
+  "reward_or_valence_inferred": false
+}