Seal Phase 4AH conditional KC drive audit and source accounting
This commit is contained in:
Digital Drosophila Archive
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[
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@@ -0,0 +1,218 @@
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}
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}
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@@ -0,0 +1,187 @@
|
||||
{
|
||||
"neurons": 166700,
|
||||
"groups": {
|
||||
"KC": 4064,
|
||||
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|
||||
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|
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|
||||
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|
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|
||||
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|
||||
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|
||||
},
|
||||
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|
||||
"KC",
|
||||
"APL",
|
||||
"ALPN",
|
||||
"MBON",
|
||||
"anatomical_DAN",
|
||||
"dopamine_annotation_only",
|
||||
"other",
|
||||
"unclassified"
|
||||
],
|
||||
"all_neurons_assigned_once": true,
|
||||
"labels_index": "global neuron_idx, identical to canonical row index",
|
||||
"identity_conflicts_present": false,
|
||||
"pass_all": true,
|
||||
"pass_all_scope": "schema, complete disjoint accounting and no conflicting exact identities; not biological validation",
|
||||
"flags": {
|
||||
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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},
|
||||
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|
||||
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|
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|
||||
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|
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|
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|
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|
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|
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},
|
||||
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|
||||
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|
||||
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|
||||
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|
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|
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|
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|
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},
|
||||
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|
||||
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|
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|
||||
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|
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|
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|
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|
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|
||||
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|
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},
|
||||
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|
||||
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|
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||||
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|
||||
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|
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|
||||
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|
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|
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},
|
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|
||||
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|
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|
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|
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|
||||
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|
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|
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|
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|
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},
|
||||
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|
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|
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|
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"other": 0,
|
||||
"unclassified": 0
|
||||
},
|
||||
"metadata_dopamine_not_annotation_DAN": {
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"dopamine_annotation_only": 52,
|
||||
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|
||||
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|
||||
},
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
}
|
||||
},
|
||||
"DPM_neuron_idx": [
|
||||
1618,
|
||||
2403
|
||||
],
|
||||
"identity_conflict_neuron_idx": [],
|
||||
"uncertain_DAN_prefix_neuron_idx": [],
|
||||
"definitions": {
|
||||
"KC": "annotation_class exactly Kenyon_Cell",
|
||||
"APL": "annotation_type exactly APL",
|
||||
"ALPN": "annotation_class exactly ALPN; annotation_class olfactory is NOT included",
|
||||
"MBON": "annotation_class exactly MBON",
|
||||
"anatomical_DAN": "annotation_class exactly DAN, no exact identity conflict; not inferred from NT or PAM/PPL1 prefix",
|
||||
"dopamine_annotation_only": "normalized neurotransmitter=dopamine, no named exact group, no DPM; transmitter-evidence diagnostic, NOT DAN",
|
||||
"other": "remaining annotated neurons, explicitly including non-conflicting annotation_type DPM",
|
||||
"unclassified": "conflicting exact identity, no anatomical class/type evidence, or only uncertain DAN-name hint without class/NT evidence"
|
||||
},
|
||||
"uncertainty_policy": {
|
||||
"explicit_unknown_tokens_casefolded": [
|
||||
"",
|
||||
"unknown",
|
||||
"unclear",
|
||||
"unclassified"
|
||||
],
|
||||
"PAM_PPL1_DAN_prefix_never_assigns_identity": true,
|
||||
"transmitter_role_and_anatomical_identity_are_separate": true,
|
||||
"DPM_retained_as_other_with_explicit_flag": true,
|
||||
"missing_ground_truth_is_not_filled_or_guessed": true,
|
||||
"other_does_not_mean_known_function": true
|
||||
},
|
||||
"provenance": {
|
||||
"metadata_path_contract": "context.META; caller must verify its preregistered SHA-256 before loading",
|
||||
"metadata_expected_sha256_from_AG_r2": "922af16846a065c3dbfca7c11146b83ca217fcbd7392edc745f444a04eae8c63",
|
||||
"frozen_rules_path": "/data/digital-drosophila/models/male-cns-lif/transmitter-audit-v1/transmitter_roles_v1.py",
|
||||
"frozen_rules_sha256": "76ba0cae6c5db417ec030456797f7935216c6877bd339d5e435133a0061e3930",
|
||||
"frozen_sidecar_path": "/data/digital-drosophila/experiments/phase4x-transmitter-provenance/roles/neuron-evidence-axes.parquet",
|
||||
"frozen_sidecar_sha256": "8b51d12d84d66cdca66aeb7d052a24e520b9c28f462bd6bf87f37dda85c33284",
|
||||
"frozen_MB_DAN_mapping_path": "/data/digital-drosophila/experiments/phase4h-dopamine-plasticity/mappings/dan-to-mbon-confirmed.parquet",
|
||||
"frozen_MB_DAN_mapping_used_to_assign_identity": false,
|
||||
"file_hash_verified_by_this_pure_function": false,
|
||||
"differences_from_4X_reporting": "ALPN separated from broader olfactory class; DPM grouped other with flag; absent/conflicting identity explicitly unclassified"
|
||||
},
|
||||
"source_graph_changed": false,
|
||||
"simulation_executed": false,
|
||||
"heldout_dynamic_access": false,
|
||||
"reward_or_valence_inferred": false
|
||||
}
|
||||
@@ -0,0 +1,22 @@
|
||||
[
|
||||
{
|
||||
"path": "protocol/inventory.json",
|
||||
"sha256": "7b5c136fac6b644ca704fc39d53582ccd7892100e77fa446efdc8440d32ead04"
|
||||
},
|
||||
{
|
||||
"path": "protocol/metadata-schema.json",
|
||||
"sha256": "14db34a21e6cb4b43b9a8bc2873455d70001c231383fc9930ff5bea1b7b8a5d0"
|
||||
},
|
||||
{
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||||
"path": "protocol/neuron-source-groups.parquet",
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||||
"sha256": "ad1984339066e7b7a7799bb69a5b38918ba0adea2416fb9cdb6754719b384f49"
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||||
},
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||||
{
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||||
"path": "protocol/population-audit.json",
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||||
"sha256": "c15bcd48f1e42ef6291cdfcaca8d8b7df6a947d99e438ba4a9d0061083fcae56"
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||||
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{
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||||
"path": "protocol/preregistered.json",
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||||
"sha256": "df39568544a06ca6b6d3486cb559f3b7d48d584673690aeaa2406c24746452b6"
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||||
}
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||||
]
|
||||
@@ -0,0 +1,66 @@
|
||||
{
|
||||
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||||
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||||
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||||
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||||
"inputs": [
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||||
{
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||||
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||||
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||||
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||||
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{
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||||
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||||
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{
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||||
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||||
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||||
"parent_commit": "ff91a74193c11b2b6e1db7432016d8616dac500f",
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||||
"scope": "Post-outcome conditional shadow accounting; no new brain simulation, no heldout, no tuning/training",
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||||
"before_accounting": true,
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||||
"prior_CAL_result_known": true,
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||||
"output_budget_bytes": 2147483648,
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||||
"CPU_only": true,
|
||||
"max_threads": 4,
|
||||
"python": "3.10.12 (main, Aug 31 2026, 10:18:17) [GCC 11.4.0]",
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||||
"numpy": "2.2.6",
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||||
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"machine": "x86_64",
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||||
"longdouble_mantissa_bits": 63
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||||
}
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||||
Reference in New Issue
Block a user