Seal AO interface failure and verified isolated postprocessing diagnosis
This commit is contained in:
Digital Drosophila Archive
@@ -0,0 +1,45 @@
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{
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||||
"actual_complete_brain_trajectories": 1,
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"cause": "Two separately loaded frozen runtime_light module objects use private _LOADED caches but share a sys.modules helper name; the second correctly rejects unowned existing binding.",
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"complete_workflow_rows": 0,
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"diagnostic": {
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"actual_changed_edges": 90,
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"experiment": "/data/digital-drosophila/experiments/phase4ao-postprocess-isolation",
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"manifest_sha256": "202efff603a05016b3f530df9eb1d3c52e1c4119dbc4372ad7b75c6ca69013a2",
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"new_brain_runs": 0,
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"off_compartment_changed_edges": 0,
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"old_trajectory_rerun": false,
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"receipt_sha256": "cefe84ac1642285b2c815a1f2a03677be064dd38125024f638eda4892cf477b3",
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"status": "PASS-ISOLATED-POSTPROCESS-DIAGNOSTIC-ONLY",
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"weights_installed": false
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},
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"executed_biological_ms": 120,
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"executed_ticks": 1200,
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"failure_stage": "after neural runtime and immediate seal, before epoch delta output creation",
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"first_checkpoint_manifest_sha256": "e2ad8068bcc8450840ff4c5fb5fbe6a39a1960cd5869b5e16096fb579df28a3a",
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"full_conditioning_executed": false,
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"learned_candidate": false,
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"learning_success_claimed": false,
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"next_step": "Separately register a new process-isolated coordinator. Do not overwrite or resume this stopped AO inventory; no result-selected seed or brain parameter change.",
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"old_integrity_pass": true,
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"old_integrity_roots": 28,
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"original_sources_unchanged": true,
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"planned_brain_calls": 12,
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"previous_synthetic_test_gap": "Tests covered isolated loader and synthetic overlay fixture, not the mixed actual loader integration.",
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"prior_AN_AM_seals_preserved": true,
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"registration_sha256": "9e2ed05879ce279da7dc0b4cac09a44d67665c230b56db94e2ca39c645bdc250",
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"runtime": {
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"all_finite": true,
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"build_or_cache_seconds": 59.22188092600118,
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"edges": 25582938,
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"neurons": 166700,
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"peak_allocated_vram_bytes": 518003712,
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"simulation_seconds": 6.514109814001131,
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"spikes": 36539,
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"wall_seconds": 66.93502944299689
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},
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"scientific_learning_assessed": false,
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"status": "FAIL-POSTPROCESS-MODULE-IDENTITY",
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"stopped_sha256": "45b096d034cc171039b95de69a97538eaf61a9bf4068a47e4e0a2cb16d0a9736",
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"unchanged_protection": "No loader cache or frozen source was patched or bypassed."
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}
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@@ -0,0 +1,23 @@
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{
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"actual_complete_brain_trajectories": 1,
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"analysis_path": "audit/failure-analysis.json",
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"analysis_sha256": "ddd996eedf943665e3593180a85a1b65399b7a29646c1ea487a6945076b71e6e",
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"completed_calls": 0,
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"diagnostic_manifest_sha256": "202efff603a05016b3f530df9eb1d3c52e1c4119dbc4372ad7b75c6ca69013a2",
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"finalizer_source_sha256": "a68f25ac6dc9e7b1aff1f8999aad9ee7531576696dd16b6ceb8e847b66dcb6d1",
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"five_reference_trials": "Sealed AM evidence retained; not rerun by AO or the CPU diagnosis.",
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"frozen_21_and_previous_draft_20_unchanged": true,
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"full_conditioning_executed": false,
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"learned_candidate": false,
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"learning_success_claimed": false,
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"model_directory_sealed": false,
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"old_integrity_pass": true,
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"old_integrity_roots": 28,
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"old_trajectory_rerun": false,
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"original_failure_preserved": true,
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"planned_calls": 12,
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"prior_AN_AM_seals_preserved": true,
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"registered_51_sources_unchanged": true,
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"registration_sha256": "9e2ed05879ce279da7dc0b4cac09a44d67665c230b56db94e2ca39c645bdc250",
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"status": "FAIL-POSTPROCESS-MODULE-IDENTITY"
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}
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@@ -0,0 +1,47 @@
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{
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"schema": "phase4ao-preparation-test-receipt-v1",
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"code_commit": "4ff241bdc96319823f5fc83f80312468f5208a5c",
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"remote_commit_verified": true,
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"final_server_cpu_suite": {
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"tests": 61,
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"failures": 0,
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"errors": 0,
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"skipped": 0,
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"unittest_seconds": 29.101,
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"whole_child_seconds": 29.996908439003164,
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"python": "3.10.12",
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"modules": [
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"test_conditioning_epoch",
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"test_conditioning_preflight_inputs",
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"test_conditioning_preflight_compare",
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"test_conditioning_preflight_prepare"
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],
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"CUDA_VISIBLE_DEVICES": "",
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"brain_runs": 0,
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||||
"source_sha256_unchanged_before_after": true
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},
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"earlier_failure": {
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"tests": 48,
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"failures": 0,
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"errors": 1,
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"cause": "New synthetic test used only the local source mirror layout when locating pinned phase4l.py on the server.",
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"fix": "Select between the two observed server/local layouts and enforce the same frozen source SHA; no skip.",
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"occurred_before_registration_or_real_input_sampling": true,
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"frozen_sources_modified": false
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},
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"previously_delivered_sources_verified": 41,
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"static_data_schema_check": {
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"odor_A": "4-ethylphenol",
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"odor_A_PNs": 26,
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"odor_B": "3-hexanone",
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"odor_B_PNs": 50,
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"KC": 4064,
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"MBON": 97,
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"DAN": 340,
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"selected_PAM15": 4,
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||||
"unknown_DAN_compartment": 14,
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"brain_runs": 0
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},
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"learning_success": false,
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"real_GPU_execution_covered_by_this_receipt": false
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}
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@@ -0,0 +1,10 @@
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{
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"complete": false,
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"completed_rows": [],
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"error": "Child failed; preserve partial files and inspect logs",
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"error_type": "ValueError",
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"no_automatic_retry": true,
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"partials_preserved": true,
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||||
"registration_sha256": "9e2ed05879ce279da7dc0b4cac09a44d67665c230b56db94e2ca39c645bdc250",
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"traceback": "Traceback (most recent call last):\n File \"/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/conditioning_preflight_workflow.py\", line 312, in run\n child_process(reg, reg_sha, 'worker', row['row_id'])\n File \"/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/conditioning_preflight_workflow.py\", line 291, in child_process\n require(result.returncode == 0, 'Child failed; preserve partial files and inspect logs')\n File \"/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/engineering_prepare.py\", line 53, in require\n raise ValueError(message)\nValueError: Child failed; preserve partial files and inspect logs\n"
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}
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+130
@@ -0,0 +1,130 @@
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{
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"D_and_update_commands_owned_by_epoch_authority": true,
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"brain_runs": 0,
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||||
"derived_spec_sha256": "358154926e55e51e3aa56c11ba52a7aee6f7c9388df187701b93e8bf65e144bf",
|
||||
"explicit_field_changes": {
|
||||
"CS_window": {
|
||||
"after": [
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||||
0,
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||||
1000
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||||
],
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||||
"before": null,
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||||
"present_before": false
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||||
},
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||||
"budget_root": {
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||||
"after": "/data/digital-drosophila/experiments/phase4ao-conditioning-interface",
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"before": "/data/digital-drosophila/experiments/phase4ak-apl-timing-validation",
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"present_before": true
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||||
},
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||||
"cs_input_seed": {
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||||
"after": 5717173809506784725,
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||||
"before": null,
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||||
"present_before": false
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||||
},
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||||
"cs_input_seed_bits": {
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||||
"after": 63,
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||||
"before": null,
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||||
"present_before": false
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||||
},
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"duration_ms": {
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||||
"after": 120.0,
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||||
"before": 100.0,
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||||
"present_before": true
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||||
},
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||||
"expected_CS_requests": {
|
||||
"after": 75.04345290362835,
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"before": null,
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"present_before": false
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},
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"max_steps": {
|
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"after": 1200,
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"name": {
|
||||
"after": "D0--light--epoch-000",
|
||||
"before": "seed_validation-physiological-00-s1073741825",
|
||||
"present_before": true
|
||||
},
|
||||
"odor_id": {
|
||||
"after": "HXDOZKJGKXYMEW-UHFFFAOYSA-N",
|
||||
"before": "OMSUIQOIVADKIM-RXMQYKEDSA-N",
|
||||
"present_before": true
|
||||
},
|
||||
"odor_name": {
|
||||
"after": "4-ethylphenol",
|
||||
"before": "ethyl (R)-(-)-3-hydroxybutanoate",
|
||||
"present_before": true
|
||||
},
|
||||
"outer_arm": {
|
||||
"after": "D0",
|
||||
"before": null,
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||||
"present_before": false
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||||
},
|
||||
"outer_epoch_id": {
|
||||
"after": "physiological__PAM15__reinforce_A__rep01/normal/paired/000",
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"outer_protocol": {
|
||||
"after": "conditioning_interface_preflight_not_full_conditioning",
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"output_budget_bytes": {
|
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"after": 4294967296,
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"before": 25769803776,
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"present_before": true
|
||||
},
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||||
"rate_sum_hz": {
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||||
"after": 750.4344482421875,
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||||
"before": 1059.0211181640625,
|
||||
"present_before": true
|
||||
},
|
||||
"seed_scope": {
|
||||
"after": "seed is separate reset control; full cs_input_seed used only by saved-input sampler",
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"source_panel_row": {
|
||||
"after": 9,
|
||||
"before": 0,
|
||||
"present_before": true
|
||||
},
|
||||
"source_panel_split": {
|
||||
"after": "heldout",
|
||||
"before": "calibration",
|
||||
"present_before": true
|
||||
},
|
||||
"steps": {
|
||||
"after": 1200,
|
||||
"before": 1000,
|
||||
"present_before": true
|
||||
},
|
||||
"target_count": {
|
||||
"after": 26,
|
||||
"before": 48,
|
||||
"present_before": true
|
||||
},
|
||||
"within_trial_weight_updates": {
|
||||
"after": false,
|
||||
"before": null,
|
||||
"present_before": false
|
||||
}
|
||||
},
|
||||
"full_conditioning_authorized": false,
|
||||
"graph_APL_model_coefficients_and_other_fields_unchanged": true,
|
||||
"independent_brain_reset_seed": 1073741825,
|
||||
"neural_state_between_epochs": "fresh reset; only plastic delta may carry via separate verified authority",
|
||||
"original_spec_sha256": "3e262136531358eaa23439df35966566e30e556b4ead705cf5492a360e758e3a",
|
||||
"outer_learning_pass_claimed": false,
|
||||
"random_draws": 0,
|
||||
"removed_stale_input_metadata": {
|
||||
"expected_external_events": 105.90211181640625,
|
||||
"odor_index": 0,
|
||||
"training": false,
|
||||
"validation_cohort": "seed_validation"
|
||||
},
|
||||
"schema": "phase4an-conditioning-preflight-inputs-v1-unregistered",
|
||||
"semantic_input_seed": 5717173809506784725
|
||||
}
|
||||
+55
@@ -0,0 +1,55 @@
|
||||
{
|
||||
"CS_window": [
|
||||
0,
|
||||
1000
|
||||
],
|
||||
"apl": {
|
||||
"gain": 0.01,
|
||||
"normalization": 1.0,
|
||||
"tau_ms": 20.0
|
||||
},
|
||||
"apl_bundle_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/apl-bundle",
|
||||
"apl_delay_steps": 18,
|
||||
"apl_precision": "float32",
|
||||
"budget_root": "/data/digital-drosophila/experiments/phase4ao-conditioning-interface",
|
||||
"coefficients_path": "/data/digital-drosophila/experiments/phase4af-author-fullgraph/oracle/no_input/coefficients.json",
|
||||
"cs_input_seed": 5717173809506784725,
|
||||
"cs_input_seed_bits": 63,
|
||||
"dt_ms": 0.1,
|
||||
"duration_ms": 120.0,
|
||||
"expected_CS_requests": 75.04345290362835,
|
||||
"graph_dir": "/data/digital-drosophila/experiments/phase4ag-author-apl-r2/graphs/full",
|
||||
"kind": "fullgraph",
|
||||
"legacy_apl_worker": "/data/digital-drosophila/models/male-cns-lif/author-apl-lab-v2/legacy_apl_worker.py",
|
||||
"max_steps": 1200,
|
||||
"mode": "physiological",
|
||||
"model": {
|
||||
"dt_ms": 0.1,
|
||||
"membrane_tau_ms": 20.0,
|
||||
"refractory_ms": 2.2,
|
||||
"reset_potential_mv": -52.0,
|
||||
"resting_potential_mv": -52.0,
|
||||
"synaptic_delay_ms": 1.8,
|
||||
"synaptic_tau_ms": 5.0,
|
||||
"threshold_mv": -45.0,
|
||||
"w_syn_mv_per_anatomical_synapse": 0.275
|
||||
},
|
||||
"name": "D0--light--epoch-000",
|
||||
"odor_id": "HXDOZKJGKXYMEW-UHFFFAOYSA-N",
|
||||
"odor_name": "4-ethylphenol",
|
||||
"outer_arm": "D0",
|
||||
"outer_epoch_id": "physiological__PAM15__reinforce_A__rep01/normal/paired/000",
|
||||
"outer_protocol": "conditioning_interface_preflight_not_full_conditioning",
|
||||
"output_budget_bytes": 4294967296,
|
||||
"precision": "float64",
|
||||
"rate_sum_hz": 750.4344482421875,
|
||||
"record_history": false,
|
||||
"science_python": "/data/digital-drosophila/models/male-cns-lif/.venv/bin/python",
|
||||
"seed": 1073741825,
|
||||
"seed_scope": "seed is separate reset control; full cs_input_seed used only by saved-input sampler",
|
||||
"source_panel_row": 9,
|
||||
"source_panel_split": "heldout",
|
||||
"steps": 1200,
|
||||
"target_count": 26,
|
||||
"within_trial_weight_updates": false
|
||||
}
|
||||
+130
@@ -0,0 +1,130 @@
|
||||
{
|
||||
"D_and_update_commands_owned_by_epoch_authority": true,
|
||||
"brain_runs": 0,
|
||||
"derived_spec_sha256": "4c6cbcf43b3e8f62692052feffe9024a41ceb592fd1661bf7e24c7fd78709ab2",
|
||||
"explicit_field_changes": {
|
||||
"CS_window": {
|
||||
"after": [
|
||||
0,
|
||||
1000
|
||||
],
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"budget_root": {
|
||||
"after": "/data/digital-drosophila/experiments/phase4ao-conditioning-interface",
|
||||
"before": "/data/digital-drosophila/experiments/phase4ak-apl-timing-validation",
|
||||
"present_before": true
|
||||
},
|
||||
"cs_input_seed": {
|
||||
"after": 4342084263790487177,
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"cs_input_seed_bits": {
|
||||
"after": 63,
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"duration_ms": {
|
||||
"after": 120.0,
|
||||
"before": 100.0,
|
||||
"present_before": true
|
||||
},
|
||||
"expected_CS_requests": {
|
||||
"after": 75.04345290362835,
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||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"max_steps": {
|
||||
"after": 1200,
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"name": {
|
||||
"after": "D0--light--epoch-001",
|
||||
"before": "seed_validation-physiological-00-s1073741825",
|
||||
"present_before": true
|
||||
},
|
||||
"odor_id": {
|
||||
"after": "HXDOZKJGKXYMEW-UHFFFAOYSA-N",
|
||||
"before": "OMSUIQOIVADKIM-RXMQYKEDSA-N",
|
||||
"present_before": true
|
||||
},
|
||||
"odor_name": {
|
||||
"after": "4-ethylphenol",
|
||||
"before": "ethyl (R)-(-)-3-hydroxybutanoate",
|
||||
"present_before": true
|
||||
},
|
||||
"outer_arm": {
|
||||
"after": "D0",
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"outer_epoch_id": {
|
||||
"after": "physiological__PAM15__reinforce_A__rep01/normal/paired/001",
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"outer_protocol": {
|
||||
"after": "conditioning_interface_preflight_not_full_conditioning",
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"output_budget_bytes": {
|
||||
"after": 4294967296,
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"before": 25769803776,
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"present_before": true
|
||||
},
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||||
"rate_sum_hz": {
|
||||
"after": 750.4344482421875,
|
||||
"before": 1059.0211181640625,
|
||||
"present_before": true
|
||||
},
|
||||
"seed_scope": {
|
||||
"after": "seed is separate reset control; full cs_input_seed used only by saved-input sampler",
|
||||
"before": null,
|
||||
"present_before": false
|
||||
},
|
||||
"source_panel_row": {
|
||||
"after": 9,
|
||||
"before": 0,
|
||||
"present_before": true
|
||||
},
|
||||
"source_panel_split": {
|
||||
"after": "heldout",
|
||||
"before": "calibration",
|
||||
"present_before": true
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"annotation_instance": "PPL103(y2a'1)_L",
|
||||
"annotation_type": "PPL103",
|
||||
"body_id": 11752,
|
||||
"mb_compartment_verbatim": "y2a'1",
|
||||
"neuron_idx": 1636
|
||||
},
|
||||
{
|
||||
"annotation_instance": "PPL103(y2a'1)_R",
|
||||
"annotation_type": "PPL103",
|
||||
"body_id": 14182,
|
||||
"mb_compartment_verbatim": "y2a'1",
|
||||
"neuron_idx": 3888
|
||||
}
|
||||
],
|
||||
"D_equals_measured_dopamine": false,
|
||||
"MBON_members": [
|
||||
{
|
||||
"annotation_instance": "MBON12(y2a'1)_L",
|
||||
"annotation_type": "MBON12",
|
||||
"body_id": 13728,
|
||||
"mb_compartment_verbatim": "y2a'1",
|
||||
"neuron_idx": 3477
|
||||
},
|
||||
{
|
||||
"annotation_instance": "MBON12(y2a'1)_L",
|
||||
"annotation_type": "MBON12",
|
||||
"body_id": 13768,
|
||||
"mb_compartment_verbatim": "y2a'1",
|
||||
"neuron_idx": 3513
|
||||
},
|
||||
{
|
||||
"annotation_instance": "MBON12(y2a'1)_R",
|
||||
"annotation_type": "MBON12",
|
||||
"body_id": 519368,
|
||||
"mb_compartment_verbatim": "y2a'1",
|
||||
"neuron_idx": 130136
|
||||
},
|
||||
{
|
||||
"annotation_instance": "MBON12(y2a'1)_R",
|
||||
"annotation_type": "MBON12",
|
||||
"body_id": 521086,
|
||||
"mb_compartment_verbatim": "y2a'1",
|
||||
"neuron_idx": 131044
|
||||
}
|
||||
],
|
||||
"MBON_type": "MBON12",
|
||||
"artificial_US": true,
|
||||
"candidate_contacts": 22603,
|
||||
"candidate_edges": 4126,
|
||||
"compartment": "y2a'1",
|
||||
"confirmed_DAN_MBON_contacts": 802,
|
||||
"confirmed_DAN_MBON_edge_ids": [
|
||||
1641330,
|
||||
1641331,
|
||||
1643507,
|
||||
1643521,
|
||||
2757348,
|
||||
2757349,
|
||||
2759592,
|
||||
2759607
|
||||
],
|
||||
"confirmed_DAN_MBON_edges": 8,
|
||||
"functional_valence": "cross-dataset type-level hypothesis, not measured MaleCNS body function",
|
||||
"unknown_selected_interface_relations": 0
|
||||
}
|
||||
},
|
||||
"new_identity_inferred": false,
|
||||
"populations": {
|
||||
"DAN": 340,
|
||||
"Kenyon_Cell": 4064,
|
||||
"MBON": 97,
|
||||
"MBON01": 2,
|
||||
"MBON12": 4,
|
||||
"PAM15": 4,
|
||||
"PPL103": 2
|
||||
},
|
||||
"schema": {
|
||||
"DAN": {
|
||||
"annotation_instance": "object",
|
||||
"annotation_type": "object",
|
||||
"body_id": "uint64",
|
||||
"mb_compartment_mapping_status": "object",
|
||||
"mb_compartment_verbatim": "object",
|
||||
"neuron_idx": "int32",
|
||||
"phase4h_population": "object"
|
||||
},
|
||||
"MBON": {
|
||||
"annotation_instance": "object",
|
||||
"annotation_type": "object",
|
||||
"body_id": "uint64",
|
||||
"mb_compartment_mapping_status": "object",
|
||||
"mb_compartment_verbatim": "object",
|
||||
"neuron_idx": "int32",
|
||||
"neurotransmitter": "object",
|
||||
"nt_consensus_nt": "object"
|
||||
},
|
||||
"candidates": {
|
||||
"candidate_basis": "object",
|
||||
"edge_id": "int64",
|
||||
"plasticity_polarity": "int64",
|
||||
"raw_synapse_count": "int64",
|
||||
"source_annotation_instance": "object",
|
||||
"source_annotation_type": "object",
|
||||
"source_body_id": "uint64",
|
||||
"source_compartment_verbatim": "object",
|
||||
"source_neuron_idx": "int32",
|
||||
"target_annotation_class": "object",
|
||||
"target_annotation_instance": "object",
|
||||
"target_annotation_type": "object",
|
||||
"target_body_id": "uint64",
|
||||
"target_compartment_verbatim": "object",
|
||||
"target_neuron_idx": "int32"
|
||||
},
|
||||
"confirmed": {
|
||||
"edge_id": "int64",
|
||||
"exact_compartment_match": "bool",
|
||||
"raw_synapse_count": "int64",
|
||||
"source_annotation_instance": "object",
|
||||
"source_annotation_type": "object",
|
||||
"source_body_id": "uint64",
|
||||
"source_compartment_verbatim": "object",
|
||||
"source_neuron_idx": "int32",
|
||||
"target_annotation_class": "object",
|
||||
"target_annotation_instance": "object",
|
||||
"target_annotation_type": "object",
|
||||
"target_body_id": "uint64",
|
||||
"target_compartment_verbatim": "object",
|
||||
"target_neuron_idx": "int32"
|
||||
},
|
||||
"metadata": {
|
||||
"annotation_assignedOlHex1": "float64",
|
||||
"annotation_assignedOlHex2": "float64",
|
||||
"annotation_birthtime": "object",
|
||||
"annotation_bodyId": "int64",
|
||||
"annotation_class": "object",
|
||||
"annotation_dimorphism": "object",
|
||||
"annotation_entryNerve": "object",
|
||||
"annotation_exitNerve": "object",
|
||||
"annotation_flywireType": "object",
|
||||
"annotation_fruDsx": "object",
|
||||
"annotation_group": "float64",
|
||||
"annotation_hemibrainType": "object",
|
||||
"annotation_instance": "object",
|
||||
"annotation_itoleeHl": "object",
|
||||
"annotation_mancBodyid": "float64",
|
||||
"annotation_mancGroup": "float64",
|
||||
"annotation_mancSerial": "float64",
|
||||
"annotation_mancType": "object",
|
||||
"annotation_matchingNotes": "object",
|
||||
"annotation_mcnsSerial": "float64",
|
||||
"annotation_receptorType": "object",
|
||||
"annotation_rootSide": "object",
|
||||
"annotation_serialMotif": "object",
|
||||
"annotation_somaLocation": "object",
|
||||
"annotation_somaNeuromere": "object",
|
||||
"annotation_somaSide": "object",
|
||||
"annotation_status": "object",
|
||||
"annotation_statusLabel": "category",
|
||||
"annotation_subclass": "object",
|
||||
"annotation_superclass": "object",
|
||||
"annotation_supertype": "object",
|
||||
"annotation_synonyms": "object",
|
||||
"annotation_tosomaLocation": "object",
|
||||
"annotation_trumanHl": "object",
|
||||
"annotation_type": "object",
|
||||
"annotation_vfbId": "object",
|
||||
"body_id": "uint64",
|
||||
"has_swc": "bool",
|
||||
"neuron_class": "object",
|
||||
"neuron_idx": "int32",
|
||||
"neuron_type": "object",
|
||||
"neurotransmitter": "object",
|
||||
"nt_body": "float64",
|
||||
"nt_cell_type": "object",
|
||||
"nt_celltype_predicted_nt": "object",
|
||||
"nt_celltype_predicted_nt_confidence": "float64",
|
||||
"nt_celltype_total_nt_predictions": "float64",
|
||||
"nt_consensus_nt": "object",
|
||||
"nt_ground_truth": "object",
|
||||
"nt_predicted_nt": "object",
|
||||
"nt_predicted_nt_confidence": "float64",
|
||||
"nt_total_nt_predictions": "float64",
|
||||
"side": "object",
|
||||
"swc_path": "object"
|
||||
}
|
||||
},
|
||||
"training": false,
|
||||
"whole_DAN_mapping_unknown": 14,
|
||||
"whole_MBON_mapping_unknown": 0
|
||||
}
|
||||
@@ -0,0 +1,168 @@
|
||||
{
|
||||
"A": {
|
||||
"cue": "A",
|
||||
"glomeruli_order": [
|
||||
"D",
|
||||
"DA1",
|
||||
"DA2",
|
||||
"DA3",
|
||||
"DA4l",
|
||||
"DA4m",
|
||||
"DC1",
|
||||
"DC2",
|
||||
"DC3",
|
||||
"DC4",
|
||||
"DL1",
|
||||
"DL3",
|
||||
"DL4",
|
||||
"DL5",
|
||||
"DM1",
|
||||
"DM2",
|
||||
"DM3",
|
||||
"DM4",
|
||||
"DM5",
|
||||
"DM6",
|
||||
"DP1l",
|
||||
"DP1m",
|
||||
"V",
|
||||
"VA1d",
|
||||
"VA1v",
|
||||
"VA2",
|
||||
"VA3",
|
||||
"VA4",
|
||||
"VA5",
|
||||
"VA6",
|
||||
"VA7l",
|
||||
"VC1",
|
||||
"VC2",
|
||||
"VC3",
|
||||
"VC4",
|
||||
"VC5",
|
||||
"VL1",
|
||||
"VL2a",
|
||||
"VL2p",
|
||||
"VM1",
|
||||
"VM2",
|
||||
"VM3",
|
||||
"VM4",
|
||||
"VM5d",
|
||||
"VM5v",
|
||||
"VM7d",
|
||||
"VM7v"
|
||||
],
|
||||
"identities": {
|
||||
"rates_hz": {
|
||||
"dtype": "<f4",
|
||||
"order": "C-logical-bytes",
|
||||
"sha256": "5a6e7d6668949909ebf03df372ac5205f80b97217d7754e932b7a63994e091bb",
|
||||
"shape": [
|
||||
26
|
||||
]
|
||||
},
|
||||
"targets": {
|
||||
"dtype": "<i4",
|
||||
"order": "C-logical-bytes",
|
||||
"sha256": "e2689126942ce22f39eb17c60f243ca16e2a0aa7e3921a68a6b38dfd15181bc4",
|
||||
"shape": [
|
||||
26
|
||||
]
|
||||
}
|
||||
},
|
||||
"mapped_vector_identity": {
|
||||
"dtype": "<f4",
|
||||
"order": "C-logical-bytes",
|
||||
"sha256": "ff40e4357e37c7d88b4b33e53fcff36fb2aa64c4826246de28762d794cd8a2a1",
|
||||
"shape": [
|
||||
47
|
||||
]
|
||||
},
|
||||
"mode": "physiological",
|
||||
"odor_id": "HXDOZKJGKXYMEW-UHFFFAOYSA-N",
|
||||
"odor_name": "4-ethylphenol",
|
||||
"source_panel_row": 9,
|
||||
"source_panel_split": "heldout"
|
||||
},
|
||||
"B": {
|
||||
"cue": "B",
|
||||
"glomeruli_order": [
|
||||
"D",
|
||||
"DA1",
|
||||
"DA2",
|
||||
"DA3",
|
||||
"DA4l",
|
||||
"DA4m",
|
||||
"DC1",
|
||||
"DC2",
|
||||
"DC3",
|
||||
"DC4",
|
||||
"DL1",
|
||||
"DL3",
|
||||
"DL4",
|
||||
"DL5",
|
||||
"DM1",
|
||||
"DM2",
|
||||
"DM3",
|
||||
"DM4",
|
||||
"DM5",
|
||||
"DM6",
|
||||
"DP1l",
|
||||
"DP1m",
|
||||
"V",
|
||||
"VA1d",
|
||||
"VA1v",
|
||||
"VA2",
|
||||
"VA3",
|
||||
"VA4",
|
||||
"VA5",
|
||||
"VA6",
|
||||
"VA7l",
|
||||
"VC1",
|
||||
"VC2",
|
||||
"VC3",
|
||||
"VC4",
|
||||
"VC5",
|
||||
"VL1",
|
||||
"VL2a",
|
||||
"VL2p",
|
||||
"VM1",
|
||||
"VM2",
|
||||
"VM3",
|
||||
"VM4",
|
||||
"VM5d",
|
||||
"VM5v",
|
||||
"VM7d",
|
||||
"VM7v"
|
||||
],
|
||||
"identities": {
|
||||
"rates_hz": {
|
||||
"dtype": "<f4",
|
||||
"order": "C-logical-bytes",
|
||||
"sha256": "7c38b8bea66cb7b2e10893d04bc8347615601b59ac4c0c1bba4df7b89c0dea33",
|
||||
"shape": [
|
||||
50
|
||||
]
|
||||
},
|
||||
"targets": {
|
||||
"dtype": "<i4",
|
||||
"order": "C-logical-bytes",
|
||||
"sha256": "df54662ef61c39084eeb98007e4323233209a6dbb6042dbe4324e75112f09590",
|
||||
"shape": [
|
||||
50
|
||||
]
|
||||
}
|
||||
},
|
||||
"mapped_vector_identity": {
|
||||
"dtype": "<f4",
|
||||
"order": "C-logical-bytes",
|
||||
"sha256": "4817635c5bf15a5aae980416d8d7c5dd52d12d06eb34cd255b116c02388e8ce7",
|
||||
"shape": [
|
||||
47
|
||||
]
|
||||
},
|
||||
"mode": "physiological",
|
||||
"odor_id": "PFCHFHIRKBAQGU-UHFFFAOYSA-N",
|
||||
"odor_name": "3-hexanone",
|
||||
"source_panel_row": 10,
|
||||
"source_panel_split": "heldout"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,21 @@
|
||||
{
|
||||
"brain_runs": 0,
|
||||
"full_seal_verification_owned_by_coordinator": true,
|
||||
"historical_dynamic_results_read": false,
|
||||
"median_mapped_response_sum": 2.556107997894287,
|
||||
"mode": "physiological",
|
||||
"numpy_version": "2.2.6",
|
||||
"original_function_called_without_PN_reordering": true,
|
||||
"original_pn_drive_AST_sha256": "5dcedb699cc77f5a47ee6d91f52c93138ddbc23e37c9c8b28927e34370d92fd1",
|
||||
"pandas_version": "2.3.3",
|
||||
"random_draws": 0,
|
||||
"schema": "phase4an-conditioning-preflight-inputs-v1-unregistered",
|
||||
"static_sources": {
|
||||
"experiments/phase4l-olfactory-grounding/odor-encoder/frozen-odor-panel.parquet": "907f16a56e024a8e2112b5751e53b0e6037b329fa110098af3d31b119c10a1a0",
|
||||
"experiments/phase4l-olfactory-grounding/odor-encoder/mapped-glomerular-vectors.npz": "f057563152e0fa22060080af13019f319e7f36563a775eff829bbc1929c451b0",
|
||||
"experiments/phase4l-olfactory-grounding/odor-encoder/selection.json": "1b832becf9d08935716fe9ba5e3cd3e619e7d208dfb43c4fa197c969d095f113",
|
||||
"experiments/phase4l-olfactory-grounding/receptor-mapping/olfactory-mapping.parquet": "a01d27000533e9844458a4c559cac084f1c34ca20a1104e97e6a0f72b0cc93b1",
|
||||
"models/male-cns-lif/olfactory-grounding-v1/phase4l.yaml": "9b8bcb7e031bf9063033a1854a439a7cd0bf6730301c2d2d02ca99a76f098d6e",
|
||||
"models/male-cns-lif/phase4l.py": "e97d58d8c1f44920d0e953f8f5831ddc86fa0198784e86460e315de4116ac553"
|
||||
}
|
||||
}
|
||||
+16
@@ -0,0 +1,16 @@
|
||||
Traceback (most recent call last):
|
||||
File "/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/conditioning_preflight_workflow.py", line 471, in <module>
|
||||
if args.action == 'worker': worker(args.registration_sha256, args.row_id)
|
||||
File "/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/conditioning_preflight_workflow.py", line 254, in worker
|
||||
E.postprocess_epoch(paths['authority'], digest(paths['authority']), paths['update'])
|
||||
File "/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/conditioning_epoch.py", line 312, in postprocess_epoch
|
||||
return _coordinate(value, paths, pins, checkpoint, authority_path, out_dir, dependencies, DIMENSIONS)
|
||||
File "/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/conditioning_epoch.py", line 209, in _coordinate
|
||||
helper, before, checked_meta, _ = r.load_overlay(paths['overlay_before'], paths['overlay_manifest_before'])
|
||||
File "/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/runtime_light.py", line 160, in load_overlay
|
||||
helper = _load('phase4an_sealed_am_overlay', meta['am_overlay_path'], AM_OVERLAY_SHA)
|
||||
File "/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/runtime_light.py", line 99, in _load
|
||||
require(_LOADED.get(name) == (path, expected, module), 'Existing unverified module binding: ' + name)
|
||||
File "/data/digital-drosophila/models/male-cns-lif/olfactory-conditioning-lab-v1/runtime_light.py", line 57, in require
|
||||
raise ValueError(message)
|
||||
ValueError: Existing unverified module binding: phase4an_sealed_am_overlay
|
||||
@@ -0,0 +1,765 @@
|
||||
{
|
||||
"files": [
|
||||
{
|
||||
"bytes": 2278,
|
||||
"path": "audit/failure-analysis.json",
|
||||
"sha256": "ddd996eedf943665e3593180a85a1b65399b7a29646c1ea487a6945076b71e6e"
|
||||
},
|
||||
{
|
||||
"bytes": 1073,
|
||||
"path": "audit/final-status.json",
|
||||
"sha256": "f8fff2cb7d4eb0abfc9653c989781c0310b6ad7ec42cce4949bae1a15fd793d8"
|
||||
},
|
||||
{
|
||||
"bytes": 1473,
|
||||
"path": "audit/preparation-tests.json",
|
||||
"sha256": "c07d90c60e2b55a99ae3af8cb42997e012bac3f7a4fa36df97b3a94524604964"
|
||||
},
|
||||
{
|
||||
"bytes": 1025,
|
||||
"path": "audit/stopped.json",
|
||||
"sha256": "45b096d034cc171039b95de69a97538eaf61a9bf4068a47e4e0a2cb16d0a9736"
|
||||
},
|
||||
{
|
||||
"bytes": 3640,
|
||||
"path": "cases/D0--light--epoch-000/derivation.json",
|
||||
"sha256": "eaad7f8b39b236a82346843ed6c510668c30878e641a7179b724e288be34718b"
|
||||
},
|
||||
{
|
||||
"bytes": 714,
|
||||
"path": "cases/D0--light--epoch-000/requests.npz",
|
||||
"sha256": "e3df9625b996a62c38e137a64bbfa7ea2d421ba02303bb9da09850a741e0d85f"
|
||||
},
|
||||
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"cudnn_deterministic": false,
|
||||
"deterministic_algorithms": false,
|
||||
"device_capability": [
|
||||
8,
|
||||
9
|
||||
],
|
||||
"device_index": 0,
|
||||
"device_name": "NVIDIA GeForce RTX 4090",
|
||||
"float32_matmul_precision": "highest",
|
||||
"numpy": "2.2.6",
|
||||
"precision_configuration_changed_by_component": false,
|
||||
"torch": "2.14.0+cu130"
|
||||
},
|
||||
"files_sha256": {
|
||||
"apl_globals.npy": "8388c8795d49cfe5b14fda54f76ef3a35030c62ba87bd8ca6334a2dcdf186f19",
|
||||
"input_matrix.npy": "c4d3df703ea5f1d7402b8255cfa19d9744139ad1048827c23b151d8ba766fec6",
|
||||
"kc_globals.npy": "97a570aafa089f93e642b2bb07e3a3322dabb14c3c7dd431f0c8d2b3b7951fdd",
|
||||
"output_matrix.npy": "e2d0a1ccd740e6777245ebf2efcd88bf5e1da9e47308c63ec8e83d451e134a73"
|
||||
},
|
||||
"gain_f32_bits": "3c23d70a",
|
||||
"h_units": "legacy mV",
|
||||
"initial_state": "float32 zeros",
|
||||
"n_apl": 2,
|
||||
"n_kc": 4064,
|
||||
"n_neurons": 166700,
|
||||
"ok": true,
|
||||
"operator_sequence": "state.mul_(decay32); drive=mv(I32,spikes32); state.add_(drive); h=matmul(state,O32)*gain32",
|
||||
"protocol": "phase4ag-apl-v1"
|
||||
},
|
||||
"apl_delay_steps": 18,
|
||||
"apl_fast_edges_zeroed": 5845,
|
||||
"apl_precision": "float32",
|
||||
"apl_schedule": "end, after threshold/reset and guarded arrivals, unconditional all KC",
|
||||
"apl_si_conversion": "applied h32 -> float64 -> multiply float64 0.001 -> separate float64 subtraction",
|
||||
"apl_timing": {
|
||||
"apl_delay_steps": 18,
|
||||
"applied_generated_rows": 1182,
|
||||
"applied_trace": "apl-applied.float32.npy",
|
||||
"biological_delay_measurement_claimed": false,
|
||||
"brain_tail_advanced": false,
|
||||
"closed_loop_branch_integrals_claimed_equal": false,
|
||||
"final_apl_state_float32": [
|
||||
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|
||||
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||||
],
|
||||
"final_apl_state_nonzero": true,
|
||||
"final_apl_state_u32_bits": [
|
||||
1125263037,
|
||||
1126786207
|
||||
],
|
||||
"finite_generated_sequence_only": true,
|
||||
"future_apl_decay_or_feedback_generated": false,
|
||||
"generated_rows": 1200,
|
||||
"generated_trace": "apl-inhibition.float32.npy",
|
||||
"initial_padding_positive_zero": true,
|
||||
"pass_all": true,
|
||||
"pending_application_tick_start": 1200,
|
||||
"pending_application_tick_stop_exclusive": 1218,
|
||||
"pending_generated_count": 18,
|
||||
"pending_generated_tick_start": 1182,
|
||||
"pending_generated_tick_stop_exclusive": 1200,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_queue_drained": false,
|
||||
"pending_raw_sha256": "df76e3bdfde0b7529784710a99c21e3d0c8de3d0619dc22577bd59b13641bd50",
|
||||
"pending_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"pending_trace": "apl-pending-tail.float32.npy",
|
||||
"sample_bits_preserved": true,
|
||||
"steps": 1200
|
||||
},
|
||||
"arriving_edges": 17655024,
|
||||
"build": {
|
||||
"arch_list": "8.9",
|
||||
"cuda_flags": [
|
||||
"-O2",
|
||||
"--fmad=false",
|
||||
"--ftz=false",
|
||||
"--prec-div=true",
|
||||
"--prec-sqrt=true"
|
||||
],
|
||||
"sources": {
|
||||
"author_ext.cpp": "208a937d17bbb041b9bf6b25b89264ee566830b60609e58491b44583d8541f15",
|
||||
"author_ext.cu": "669f166e18ce9a3f63fc723db8b0a8b74f7fa4757194b1bd65b4cf6008a7787e"
|
||||
},
|
||||
"torch": "2.14.0+cu130",
|
||||
"torch_cuda": "13.0"
|
||||
},
|
||||
"build_or_cache_seconds": 59.22188092600118,
|
||||
"case": "D1--reference--epoch-000",
|
||||
"checkpoint_continuation_used": false,
|
||||
"complete": true,
|
||||
"completed_ticks": 1200,
|
||||
"counts_match_sparse_events": true,
|
||||
"cpu_sync_each_tick": true,
|
||||
"diagnostic_mode": "reference",
|
||||
"diagnostic_simulation_seconds": 6.514109814001131,
|
||||
"edges": 25582938,
|
||||
"effective_weights_raw_sha256": "b8b8f43048e0ef03943e607666319d25363bed3b2564fdc02b4149837e7eedc9",
|
||||
"entire_neural_trial_executed": true,
|
||||
"explicit_steps_executed": 1200,
|
||||
"first_failure_tick": -1,
|
||||
"full_APL_history_recorded": true,
|
||||
"full_queue_hashes_recorded": true,
|
||||
"full_sequence_bitwise_audit_performed": true,
|
||||
"full_tick_state_hashes_recorded": true,
|
||||
"future_generated_decay_tail_included": false,
|
||||
"hidden_early_stop": false,
|
||||
"input_sha256": {
|
||||
"base_weights.npy": "462839ffc3feb8f6c278044488082b1c8e410e7f23229d6b5e29d1b7042416a1",
|
||||
"coefficients.json": "bde79d95ef0097b827d5faf4d5658eafc009d8e9fcef1fddd645c953823e3f64",
|
||||
"requests.npz": "e3df9625b996a62c38e137a64bbfa7ea2d421ba02303bb9da09850a741e0d85f",
|
||||
"spec.json": "5c05e5de6aab9fc1909304f309ce87f8698737e99c29f2692e20323ca02d443e"
|
||||
},
|
||||
"kc_targets_present": 4064,
|
||||
"learning_pass_claimed": false,
|
||||
"max_steps": 1200,
|
||||
"nodes": 166700,
|
||||
"oracle_validation_claim": false,
|
||||
"outer_learning_status": "not evaluated by this single-trial executor",
|
||||
"outer_protocol": "conditioning_interface_preflight_not_full_conditioning",
|
||||
"pass_all": true,
|
||||
"pass_all_scope": "single fixed-weight trial finite/recording integrity only; no learning or equivalence claim",
|
||||
"peak_allocated_vram_bytes": 518003712,
|
||||
"peak_reserved_vram_bytes": 541065216,
|
||||
"pending_generated_count": 18,
|
||||
"pending_initial_zero_prefix": 0,
|
||||
"pending_tail_shape": [
|
||||
18,
|
||||
4064
|
||||
],
|
||||
"performance_runtime_claim": false,
|
||||
"precision": "float64",
|
||||
"record_history": false,
|
||||
"rejected_requests": 27,
|
||||
"requested": 82,
|
||||
"sealed_ae_backend_sha256": "03758d07572f4b44d272059d9308fac534268ad201b57bdd77d69fee95e67278",
|
||||
"shared_apl_component_oracle_limitation": true,
|
||||
"source_provenance": {
|
||||
"candidate_sha256": "af1975ba5e5e700208c0a598d3cbe648a3cf10885c6231239b6e4b28f76d173b",
|
||||
"diagnostic_additions": [
|
||||
"generated/applied/pending trace split",
|
||||
"fixed-sequence bitwise audit",
|
||||
"source provenance and final APL state disclosure"
|
||||
],
|
||||
"module_globals_patched": false,
|
||||
"only_dynamics_change": "fixed zero-initialized 0/18-step h32 delay before unchanged end g write",
|
||||
"sealed_source_sha256": {
|
||||
"ae_backend": "03758d07572f4b44d272059d9308fac534268ad201b57bdd77d69fee95e67278",
|
||||
"af_queue": "d72003d98f0f1624b12126eff50bd361c43d888f4a64d90ba9247a58976f1961",
|
||||
"ag_gpu": "69f5d893f47dafff4ef7c3186c3df0b9014666b32c8f4e943b57016bec92b18a",
|
||||
"ag_worker": "21ceec65fe42581dc55872010e0025d660e80358905f1cf4df1dadf341a3b291"
|
||||
},
|
||||
"source_diff_sha256": "0584f865885b18e6a36870a7ecfbbc98d7a94274fa5e9e073e7cf97597d78a03"
|
||||
},
|
||||
"state_units": "SI volts",
|
||||
"steps": 1200,
|
||||
"total_spikes": 36539,
|
||||
"wall_seconds": 66.93502944299689,
|
||||
"within_trial_weight_updates": false
|
||||
}
|
||||
Reference in New Issue
Block a user