Audit frozen LIF semantics and real recurrent motifs without learning changes

2026-09-30 01:00:16 +08:00
parent 3213aada79
commit 6fc326ccd1
55 changed files with 2809 additions and 26 deletions
@@ -0,0 +1,12 @@
+{
+  "dt_ms": 0.1,
+  "integration": "forward_euler",
+  "membrane_tau_ms": 20.0,
+  "refractory_ms": 2.2,
+  "reset_potential_mv": -52.0,
+  "resting_potential_mv": -52.0,
+  "synaptic_delay_ms": 1.8,
+  "synaptic_tau_ms": 5.0,
+  "threshold_mv": -45.0,
+  "w_syn_mv_per_anatomical_synapse": 0.275
+}
@@ -0,0 +1,7 @@
+{
+  "baseline_phase4b": "693468685a7ff3db1d09a088e0bbdaa78c595d64086b27e9cc18abceb4c7d174",
+  "metadata": "922af16846a065c3dbfca7c11146b83ca217fcbd7392edc745f444a04eae8c63",
+  "runtime_config": "6d0189f4ec570cb3352d15ed8d195d1ccb32ee1d29c33dc1e4f00d377b74787e",
+  "runtime_cpp": "9d204d77d70b3723567671a61ce8e2e6162e261f48825e86fb34565e3faa622d",
+  "runtime_cuda": "c24985f4e366f90790d25ab5eceb9d6aff0f9064dd61c7413c13d2a2a4fa5fcd"
+}
@@ -0,0 +1,7 @@
+{
+  "audit/local-inhibition-crosswalk.csv": "d2e2c65cffa100598c6f991bcf8df3b094501fbe59d34519839df280a2d8b087",
+  "audit/selected-metadata.parquet": "c1dde5df5408aeb878d6c422bc1c86ba44c3c5770f986014e594e356412a013d",
+  "audit/selected-real-edges.csv": "9103e9d03fa21058a4f6cd21780c56fed8cdcfca26c34c2a43726e39aed8ec55",
+  "protocol/dynamics.json": "a5aa62f5588fbf754c6164b69d61a5154d23fc8f749ae4c36aea3f4ad1fa2576",
+  "protocol/frozen-input-hashes.json": "6cbe6b4b43f7e3928b247a2188b955be5431224a01f8c0838544a0b9f34fe569"
+}
@@ -0,0 +1,123 @@
+{
+  "before_analysis": true,
+  "config": {
+    "additional_frozen": [
+      "models/male-cns-lif/apl-pn-scope-audit-v1",
+      "experiments/phase4aa-apl-pn-scope",
+      "models/male-cns-lif/terminal-scope-diagnostic-v1",
+      "experiments/phase4ab-terminal-scope"
+    ],
+    "author": {
+      "commit": "91bdd1e7dcf193f3e7ca5a8933497fcef63b7960",
+      "model_sha256": "fc45837d7122c6ce2a7f3f2f23c515992e4b232aadb919efabb72337fac88e4e",
+      "paper": "https://www.nature.com/articles/s41586-024-07763-9",
+      "repository": "https://github.com/philshiu/Drosophila_brain_model"
+    },
+    "canonical": "datasets/male-cns-v1.0/processed/neuron-only",
+    "duration_ms": 1000,
+    "experiment": "experiments/phase4ac-lif-semantics",
+    "late_start_ms": 500,
+    "model": "models/male-cns-lif/lif-semantics-audit-v1",
+    "motifs": [
+      {
+        "name": "pair",
+        "nodes": [
+          1381,
+          1511
+        ]
+      },
+      {
+        "name": "trio",
+        "nodes": [
+          1197,
+          1381,
+          1511
+        ]
+      },
+      {
+        "name": "five",
+        "nodes": [
+          1197,
+          1381,
+          1511,
+          82312,
+          133666
+        ]
+      },
+      {
+        "name": "feedforward",
+        "nodes": [
+          1197,
+          1381,
+          1511,
+          82312,
+          133666
+        ],
+        "pairs": [
+          [
+            1381,
+            1511
+          ],
+          [
+            1511,
+            1197
+          ],
+          [
+            1197,
+            133666
+          ],
+          [
+            133666,
+            82312
+          ]
+        ]
+      },
+      {
+        "force": false,
+        "name": "no_input",
+        "nodes": [
+          1197,
+          1381,
+          1511,
+          82312,
+          133666
+        ]
+      }
+    ],
+    "old_snapshot": "registry/snapshots/bootstrap-20260929",
+    "phase": "4AC",
+    "root": "/data/digital-drosophila",
+    "runtime": "models/male-cns-lif/deterministic-runtime-v2",
+    "scope": {
+      "conditioning": false,
+      "full_brain_alternative_dynamics": false,
+      "learned_candidate": false,
+      "requires_separate_authorization_for_new_brain_model": true
+    },
+    "seed_node": 1381,
+    "selected_nodes": [
+      1197,
+      1381,
+      1511,
+      82312,
+      133666
+    ],
+    "synthetic_policies": [
+      "frozen",
+      "reset_g_only",
+      "refractory_gate_only",
+      "reset_and_refractory"
+    ]
+  },
+  "parent_commit": "3213aada793740961885ba525494e95f019be6f8",
+  "sources": {
+    "PROTOCOL.md": "484296e132a836900efaa336d387b6974aa39c6af2dee211b7ba668cf71be257",
+    "audit_semantics.py": "f20724387ca7ed63b9e35fb9ce3d2964da44f85318856b7403b5536a442422b8",
+    "brian2-evidence.json": "bebd4dfa2dda1aca601a52b24e3eabdd887ce261c3548e377198ab154d81f16e",
+    "config.yaml": "433151183a4755f5fdfec33f6a9404aa5fb186ec45866ebb58be4ba3e4ebb568",
+    "math_reference.py": "5166366251f99359b1301f514f5d9ae5f0f041fd3a3f98902386192117f01aea",
+    "report.py": "76a21eca32ff8caba88ab84616e226e687dd0d2df5da62816c81b5ba08297394",
+    "test_math.py": "9ee96ed78bfa692b12f0db6862087a19dc351c4afd9bb94cf02733ec6a002f01"
+  },
+  "timestamp_utc": "2026-09-29T16:52:46.554275+00:00"
+}