Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
This commit is contained in:
Digital Drosophila Archive
+196
@@ -0,0 +1,196 @@
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+31
@@ -0,0 +1,31 @@
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{
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||||
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||||
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}
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+107
@@ -0,0 +1,107 @@
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{
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||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
+232
@@ -0,0 +1,232 @@
|
||||
[
|
||||
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|
||||
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|
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
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||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "dimorphism",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "matchingNotes",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "entryNerve",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "mancSerial",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "mcnsSerial",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "serialMotif",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "fruDsx",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "exitNerve",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "receptorType",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "somaLocation",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "tosomaLocation",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "status",
|
||||
"table": "annotation"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "body",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "cell_type",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "total_nt_predictions",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "predicted_nt_confidence",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "predicted_nt",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "ground_truth",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "celltype_total_nt_predictions",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "celltype_predicted_nt",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "celltype_predicted_nt_confidence",
|
||||
"table": "NT"
|
||||
},
|
||||
{
|
||||
"exact": true,
|
||||
"field": "consensus_nt",
|
||||
"table": "NT"
|
||||
}
|
||||
]
|
||||
@@ -0,0 +1,46 @@
|
||||
{
|
||||
"audit_role_conflation_fixed": true,
|
||||
"biology_identity_issue_resolved": false,
|
||||
"compatibility_checks": 36,
|
||||
"frozen_brain_modified": false,
|
||||
"integrity_pass": true,
|
||||
"learning_candidate": false,
|
||||
"limit": "conditional replay only; metadata DAN is annotation identity not ground-truth certification",
|
||||
"metadata": {
|
||||
"DPM_count": 2,
|
||||
"DPM_with_raw_ground_truth": 0,
|
||||
"annotation_DAN": 340,
|
||||
"annotation_DAN_not_metadata_dopamine": 2,
|
||||
"compartment_mapping_unchanged": true,
|
||||
"confidence_null": 1035,
|
||||
"confidence_outside_0_1": 0,
|
||||
"confidence_probability_calibration": "not established; preserve raw values",
|
||||
"consensus_to_runtime_label_exact": true,
|
||||
"ground_truth_absent": 81216,
|
||||
"ground_truth_agreement_not_independent_accuracy": true,
|
||||
"ground_truth_present": 85484,
|
||||
"ground_truth_vs_consensus_mismatch": 0,
|
||||
"identity_conflicts": 0,
|
||||
"metadata_dopamine": 392,
|
||||
"metadata_dopamine_not_annotation_DAN": 54,
|
||||
"neurons": 166700,
|
||||
"raw_column_checks": 46,
|
||||
"raw_to_metadata_exact": true,
|
||||
"role_groups": {
|
||||
"APL_annotation": 2,
|
||||
"DAN_annotation": 340,
|
||||
"DPM_annotation": 2,
|
||||
"KC_annotation": 4064,
|
||||
"MBON_annotation": 97,
|
||||
"PN_olfactory_annotation": 3325,
|
||||
"dopamine_metadata_role_unknown": 52,
|
||||
"other_annotation": 158818
|
||||
}
|
||||
},
|
||||
"phase": "4X",
|
||||
"raw_import_bug_found": false,
|
||||
"reference_pass": true,
|
||||
"replays": 90,
|
||||
"sign_weight_chain_exact": true,
|
||||
"status": "AUDIT-CLASSIFICATION-REPAIR-PASS"
|
||||
}
|
||||
@@ -0,0 +1,5 @@
|
||||
{
|
||||
"NT": "body: int64\ncell_type: string\ntotal_nt_predictions: int32\npredicted_nt_confidence: double\npredicted_nt: string\nground_truth: string\ncelltype_total_nt_predictions: int32\ncelltype_predicted_nt: string\ncelltype_predicted_nt_confidence: double\nconsensus_nt: string\n-- schema metadata --\npandas: '{\"index_columns\": [{\"kind\": \"range\", \"name\": null, \"start\": 0, \"' + 1606",
|
||||
"annotation": "assignedOlHex1: double\nassignedOlHex2: double\nbodyId: int64\nflywireType: string\ngroup: double\ninstance: string\nsomaSide: string\nstatusLabel: dictionary<values=string, indices=int8, ordered=1>\nsuperclass: string\ntype: string\nvfbId: string\nhemibrainType: string\nitoleeHl: string\nsupertype: string\nbirthtime: string\nmancBodyid: double\nmancGroup: double\nmancType: string\nsubclass: string\nsynonyms: string\nclass: string\nrootSide: string\nsomaNeuromere: string\ntrumanHl: string\ndimorphism: string\nmatchingNotes: string\nentryNerve: string\nmancSerial: double\nmcnsSerial: double\nserialMotif: string\nfruDsx: string\nexitNerve: string\nreceptorType: string\nsomaLocation: list<item: int64>\n child 0, item: int64\ntosomaLocation: list<item: int64>\n child 0, item: int64\nstatus: string\n-- schema metadata --\npandas: '{\"index_columns\": [{\"kind\": \"range\", \"name\": null, \"start\": 0, \"' + 4583",
|
||||
"metadata": "neuron_idx: int32\nbody_id: uint64\nneuron_type: string\nneuron_class: string\nside: string\nneurotransmitter: string\nhas_swc: bool\nswc_path: string\nannotation_assignedOlHex1: double\nannotation_assignedOlHex2: double\nannotation_bodyId: int64\nannotation_flywireType: string\nannotation_group: double\nannotation_instance: string\nannotation_somaSide: string\nannotation_statusLabel: dictionary<values=string, indices=int8, ordered=1>\nannotation_superclass: string\nannotation_type: string\nannotation_vfbId: string\nannotation_hemibrainType: string\nannotation_itoleeHl: string\nannotation_supertype: string\nannotation_birthtime: string\nannotation_mancBodyid: double\nannotation_mancGroup: double\nannotation_mancType: string\nannotation_subclass: string\nannotation_synonyms: string\nannotation_class: string\nannotation_rootSide: string\nannotation_somaNeuromere: string\nannotation_trumanHl: string\nannotation_dimorphism: string\nannotation_matchingNotes: string\nannotation_entryNerve: string\nannotation_mancSerial: double\nannotation_mcnsSerial: double\nannotation_serialMotif: string\nannotation_fruDsx: string\nannotation_exitNerve: string\nannotation_receptorType: string\nannotation_somaLocation: list<element: int64>\n child 0, element: int64\nannotation_tosomaLocation: list<element: int64>\n child 0, element: int64\nannotation_status: string\nnt_body: int64\nnt_cell_type: string\nnt_total_nt_predictions: int32\nnt_predicted_nt_confidence: double\nnt_predicted_nt: string\nnt_ground_truth: string\nnt_celltype_total_nt_predictions: int32\nnt_celltype_predicted_nt: string\nnt_celltype_predicted_nt_confidence: double\nnt_consensus_nt: string"
|
||||
}
|
||||
Reference in New Issue
Block a user