Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
This commit is contained in:
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# Phase 4T / P0 — 已封存事件时序诊断
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共审计 20 条 KC 事件序列,零 credit 3 条。没有新脑模拟、权重更新或候选选择。
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| split | odor | seed | KC active | target active | first target ms | peak bin ms | reason |
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|---|---|---:|---:|---:|---:|---:|---|
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| cal | CAL_A | 54101 | 163 | 68 | 18.0 | 20 | credit_present |
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| cal | CAL_A | 54102 | 154 | 62 | 16.5 | 15 | credit_present |
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| cal | CAL_A | 54103 | 154 | 62 | 14.700000000000001 | 15 | credit_present |
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| cal | CAL_A | 54104 | 170 | 68 | 14.3 | 15 | credit_present |
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| cal | CAL_A | 54105 | 156 | 64 | 12.700000000000001 | 15 | credit_present |
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| cal | CAL_B | 54101 | 165 | 55 | 14.700000000000001 | 15 | credit_present |
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| cal | CAL_B | 54102 | 183 | 56 | 14.100000000000001 | 15 | credit_present |
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| cal | CAL_B | 54103 | 161 | 59 | 16.3 | 15 | credit_present |
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| cal | CAL_B | 54104 | 183 | 59 | 14.200000000000001 | 15 | credit_present |
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| cal | CAL_B | 54105 | 143 | 61 | 13.9 | 15 | credit_present |
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| held | CAL_A | 55101 | 167 | 71 | 16.1 | 15 | credit_present |
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| held | CAL_A | 55102 | 164 | 69 | 20.3 | 20 | target_onset_after_US |
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| held | CAL_A | 55103 | 171 | 61 | 20.200000000000003 | 20 | target_onset_after_US |
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| held | CAL_A | 55104 | 155 | 75 | 16.5 | 20 | credit_present |
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| held | CAL_A | 55105 | 157 | 75 | 20.1 | 25 | target_onset_after_US |
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| held | CAL_B | 55101 | 161 | 58 | 16.3 | 15 | credit_present |
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| held | CAL_B | 55102 | 185 | 82 | 14.8 | 15 | credit_present |
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| held | CAL_B | 55103 | 171 | 58 | 18.0 | 20 | credit_present |
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| held | CAL_B | 55104 | 164 | 54 | 13.100000000000001 | 15 | credit_present |
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| held | CAL_B | 55105 | 166 | 63 | 15.8 | 20 | credit_present |
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所有 matched/random credit 均精确复现 Phase 4S,并通过独立逐 KC 单点 oracle。
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描述性曲线不能用于把旧 heldout 当成新的验证集。下一实验必须先冻结规则,再使用全新种子。
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仅定位 gate 落空原因;不能把时序相关性推断为 APL 或某个回路的因果作用。
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+149
@@ -0,0 +1,149 @@
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{
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"before_after_equal": true,
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"current": {
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"P": {
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"checked": 86,
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"control": "/data/digital-drosophila/experiments/phase4p-deterministic-runtime/manifests/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/experiments/phase4p-deterministic-runtime"
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},
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"P_candidate": {
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"checked": 10,
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"control": "/data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2/candidate/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2/candidate"
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},
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"Q": {
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"checked": 24,
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"control": "/data/digital-drosophila/experiments/phase4q-credit-v3/manifests/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/experiments/phase4q-credit-v3"
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},
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"Q_model": {
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"checked": 6,
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"control": "/data/digital-drosophila/models/male-cns-lif/credit-v3/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/models/male-cns-lif/credit-v3"
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},
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"R": {
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"checked": 205,
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"control": "/data/digital-drosophila/experiments/phase4r-timing-audit/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/experiments/phase4r-timing-audit"
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},
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"R_model": {
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"checked": 5,
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"control": "/data/digital-drosophila/models/male-cns-lif/timing-audit-v1/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/models/male-cns-lif/timing-audit-v1"
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},
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"source_model": {
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"checked": 4,
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"control": "/data/digital-drosophila/models/male-cns-lif/timing-credit-v1/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/models/male-cns-lif/timing-credit-v1"
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},
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"source_root": {
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"checked": 46,
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"control": "/data/digital-drosophila/experiments/phase4s-timing-credit/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/experiments/phase4s-timing-credit"
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}
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},
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"old": {
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"Phase1_to_3B": {
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"all_passed": true,
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"phase1_phase2_backup_sha256": {
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"passed": true,
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"returncode": 0,
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"stderr": ""
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},
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"phase3_sha256": {
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"passed": true,
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"returncode": 0,
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"stderr": ""
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},
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"phase3b_166700_sha256": {
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"passed": true,
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"returncode": 0,
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"stderr": ""
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},
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"phase3b_audit_sha256": {
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"passed": true,
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"returncode": 0,
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"stderr": ""
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},
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"raw_core_sha256": {
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"passed": true,
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"returncode": 0,
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"stderr": ""
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},
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"raw_skeleton_md5": {
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"passed": true,
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"returncode": 0,
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"stderr": ""
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}
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},
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"Phase4C_to_4L": {
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"all_passed": true,
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"phase4c_to_4i": true,
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"phase4j_to_4l": {
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"phase4j_model_root": true,
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"phase4j_root": true,
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"phase4k_model_root": true,
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"phase4k_root": true,
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"phase4l_model_root": true,
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"phase4l_root": true
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}
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},
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"Phase4M_4N": {
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"Phase4M experiment": {
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"checked": 80,
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"control": "/data/digital-drosophila/experiments/phase4m-kcmbon-efficacy/manifests/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/experiments/phase4m-kcmbon-efficacy"
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},
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"Phase4M model": {
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"checked": 7,
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"control": "/data/digital-drosophila/models/male-cns-lif/kcmbon-efficacy-v1/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/models/male-cns-lif/kcmbon-efficacy-v1"
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},
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"Phase4N experiment": {
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"checked": 396,
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"control": "/data/digital-drosophila/experiments/phase4n-credit-assignment/manifests/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/experiments/phase4n-credit-assignment"
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},
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"Phase4N model": {
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"checked": 12,
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"control": "/data/digital-drosophila/models/male-cns-lif/credit-assignment-v1/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/models/male-cns-lif/credit-assignment-v1"
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}
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},
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"Phase4O": {
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"checked": 40,
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"control": "/data/digital-drosophila/experiments/phase4o-runtime-credit/manifests/checksums.sha256",
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"failures": [],
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"passed": true,
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"root": "/data/digital-drosophila/experiments/phase4o-runtime-credit"
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},
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"all_static_checks_passed": true,
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"frozen_input_hashes_unchanged": true
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},
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"pass": true,
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"source_hashes_unchanged": true
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}
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+190
@@ -0,0 +1,190 @@
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{
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"checked": 46,
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"pass": true,
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"records": [
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{
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"path": "audit/REPORT.md",
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"sha256": "6366fa4ac7aba5be86f3f2e49209f114c16da68de850ef6b62a2434c74d2b159"
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},
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{
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"path": "audit/frozen-integrity.json",
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"sha256": "ea530792c571a712ecf49d6724651345300318909cc161444d103b43d60e3ee4"
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},
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{
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"path": "audit/mechanism-summary.json",
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"sha256": "07132109f0d8c256eaf3f61481601084713802fb223e17d0b870e94420f96807"
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},
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{
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"path": "audit/preflight.json",
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"sha256": "181d35ae762b9f34f116fdcf518bf9523b841110290b4e4a380446f73f37133e"
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{
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||||
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"sha256": "5a5c451a4b4849d90b0c0ba3d39a3294975566a6994499fec70e192fc84e8bcd"
|
||||
},
|
||||
{
|
||||
"path": "run.log",
|
||||
"sha256": "5850089c88f104223705559f939968999b98fdc0881dad8df07c9b0729a77c9d"
|
||||
},
|
||||
{
|
||||
"path": "manifest.json",
|
||||
"sha256": "05ba33f141d1ee3f25f3a5a4d075fd7c55cc2c79a91450a8643116ef9522bf2c"
|
||||
}
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,255 @@
|
||||
{
|
||||
"all_zero_trials_explained_by_event_timing": true,
|
||||
"implementation_note": "Initial report serialization stopped on pandas NaN for absent pre-US events; serialize original null-bearing records instead. No scientific result changed.",
|
||||
"limits": [
|
||||
"Descriptive reuse of known seeds, not independent validation.",
|
||||
"Gate absence is diagnosed, upstream cause of onset variability is not established.",
|
||||
"No new window or US selection on old heldout outcomes."
|
||||
],
|
||||
"new_candidate": false,
|
||||
"new_simulations": 0,
|
||||
"phase": "4T",
|
||||
"reason_counts": [
|
||||
{
|
||||
"count": 5,
|
||||
"label": "CAL_A",
|
||||
"reason": "credit_present",
|
||||
"split": "cal"
|
||||
},
|
||||
{
|
||||
"count": 5,
|
||||
"label": "CAL_B",
|
||||
"reason": "credit_present",
|
||||
"split": "cal"
|
||||
},
|
||||
{
|
||||
"count": 2,
|
||||
"label": "CAL_A",
|
||||
"reason": "credit_present",
|
||||
"split": "held"
|
||||
},
|
||||
{
|
||||
"count": 3,
|
||||
"label": "CAL_A",
|
||||
"reason": "target_onset_after_US",
|
||||
"split": "held"
|
||||
},
|
||||
{
|
||||
"count": 5,
|
||||
"label": "CAL_B",
|
||||
"reason": "credit_present",
|
||||
"split": "held"
|
||||
}
|
||||
],
|
||||
"reproduction": [
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_A-54101"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_A-54102"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_A-54103"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_A-54104"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_A-54105"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_B-54101"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_B-54102"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_B-54103"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_B-54104"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "cal-CAL_B-54105"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_A-55101"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_A-55102"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_A-55103"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_A-55104"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_A-55105"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_B-55101"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_B-55102"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_B-55103"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_B-55104"
|
||||
},
|
||||
{
|
||||
"independent_oracle_exact": true,
|
||||
"matched_exact": true,
|
||||
"random_exact": true,
|
||||
"trial": "held-CAL_B-55105"
|
||||
}
|
||||
],
|
||||
"source_phase": "4S",
|
||||
"stage": "P0 event diagnosis",
|
||||
"target_compartment": "y5B'2a",
|
||||
"target_edge_total": 2109,
|
||||
"target_source_KC_total": 2083,
|
||||
"time_semantics": "Original gate uses emission times, including same-step KC. Equal +18 steps on KC and US preserves relative ages; no asymmetric arrival correction.",
|
||||
"trials": 20,
|
||||
"wall_seconds": 0.8374417159998302,
|
||||
"weight_updates": 0,
|
||||
"zero_credit_trials": [
|
||||
{
|
||||
"KC_active": 164,
|
||||
"KC_events": 187,
|
||||
"edge_coverage_fraction": 0.03319108582266477,
|
||||
"edges_covered_any_time": 70,
|
||||
"events_sha256": "8eb1af9c9d36081aea82a58948a129ff3b56c89eb3e1ec7285d0004c3ee9e2ac",
|
||||
"first_after_US_ms": 20.3,
|
||||
"first_target_ms": 20.3,
|
||||
"gate_active_KC": 0,
|
||||
"gate_covered_edges": 0,
|
||||
"gate_events": 0,
|
||||
"label": "CAL_A",
|
||||
"last_before_US_ms": null,
|
||||
"last_target_ms": 107.9,
|
||||
"matched_credit": 0.0,
|
||||
"peak_bin_start_ms": 20,
|
||||
"random_expectation": 1.0365466396013896,
|
||||
"reason": "target_onset_after_US",
|
||||
"seed": 55102,
|
||||
"source_file": "/data/digital-drosophila/experiments/phase4s-timing-credit/events/held-CAL_A-55102.parquet",
|
||||
"split": "held",
|
||||
"target_active_KC": 69,
|
||||
"target_edge_total": 2109,
|
||||
"target_events": 75,
|
||||
"target_source_KC_total": 2083
|
||||
},
|
||||
{
|
||||
"KC_active": 171,
|
||||
"KC_events": 194,
|
||||
"edge_coverage_fraction": 0.02939781887150308,
|
||||
"edges_covered_any_time": 62,
|
||||
"events_sha256": "b9a6d94ca075bec04d47201c220807ef39127d5ec8414fc41003529bc1ed3e5d",
|
||||
"first_after_US_ms": 20.200000000000003,
|
||||
"first_target_ms": 20.200000000000003,
|
||||
"gate_active_KC": 0,
|
||||
"gate_covered_edges": 0,
|
||||
"gate_events": 0,
|
||||
"label": "CAL_A",
|
||||
"last_before_US_ms": null,
|
||||
"last_target_ms": 110.0,
|
||||
"matched_credit": 0.0,
|
||||
"peak_bin_start_ms": 20,
|
||||
"random_expectation": 0.9274364670117696,
|
||||
"reason": "target_onset_after_US",
|
||||
"seed": 55103,
|
||||
"source_file": "/data/digital-drosophila/experiments/phase4s-timing-credit/events/held-CAL_A-55103.parquet",
|
||||
"split": "held",
|
||||
"target_active_KC": 61,
|
||||
"target_edge_total": 2109,
|
||||
"target_events": 67,
|
||||
"target_source_KC_total": 2083
|
||||
},
|
||||
{
|
||||
"KC_active": 157,
|
||||
"KC_events": 183,
|
||||
"edge_coverage_fraction": 0.03698435277382646,
|
||||
"edges_covered_any_time": 78,
|
||||
"events_sha256": "c297e521678ad9dddd001ca59fda1771d8f81cce215483753563594c36a4e1fc",
|
||||
"first_after_US_ms": 20.1,
|
||||
"first_target_ms": 20.1,
|
||||
"gate_active_KC": 0,
|
||||
"gate_covered_edges": 0,
|
||||
"gate_events": 0,
|
||||
"label": "CAL_A",
|
||||
"last_before_US_ms": null,
|
||||
"last_target_ms": 117.0,
|
||||
"matched_credit": 0.0,
|
||||
"peak_bin_start_ms": 25,
|
||||
"random_expectation": 1.1712399242570002,
|
||||
"reason": "target_onset_after_US",
|
||||
"seed": 55105,
|
||||
"source_file": "/data/digital-drosophila/experiments/phase4s-timing-credit/events/held-CAL_A-55105.parquet",
|
||||
"split": "held",
|
||||
"target_active_KC": 75,
|
||||
"target_edge_total": 2109,
|
||||
"target_events": 83,
|
||||
"target_source_KC_total": 2083
|
||||
}
|
||||
]
|
||||
}
|
||||
Reference in New Issue
Block a user