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Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

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Digital Drosophila Archive
2026-09-29 03:38:32 +08:00
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registry/catalog-20260929/evidence/phase4s-timing-credit/audit/REPORT.md
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# Phase 4S：时序修复与 credit 特异性验证
状态：`FAIL-TIMING-VALIDATION`
本轮只改变外部 US 时序及预注册的局部 eligibility 窗口。全脑动力学、APL、嗅觉 encoder、学习幅度和 14,232 条 plastic mask 保持冻结。
比较采用同一批真实 KC 事件，累积实验性 E overlay；事件采集始终使用未学习的 base brain。结果不构成在线关联记忆声明。
校准选择：US=20 ms，window=5 ms，tau=1.666667 ms。
独立 seeds 验证：
| 气味 | matched/random credit 比值 | 达标 seeds |
|---|---:|---:|
| CAL_A | 4.8661 | 2/5 |
| CAL_B | 14.1875 | 5/5 |
独立 timing gate：False。
独立 timing gate 未通过，正式累积权重实验、isolated replay 和 whole-brain 传递实验均未执行。未生成学习产物；不能据此判断这些未执行实验的结果。
Whole-brain：null
冻结参考回归：True。完整 frozen integrity 结果见 `frozen-integrity.json`。
限制：只有两个 calibration odors 和五个独立验证 seeds；credit 改善与刺激特异 MBON 功能变化分别判定。没有根据正式 A/B 或 heldout 结果重新挑参数，没有提前停止在最有利 checkpoint。
registry/catalog-20260929/evidence/phase4s-timing-credit/audit/frozen-integrity.json
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{
"Phase1_4O": {
"Phase1_to_3B": {
"all_passed": true,
"phase1_phase2_backup_sha256": {
"passed": true,
"returncode": 0,
"stderr": ""
},
"phase3_sha256": {
"passed": true,
"returncode": 0,
"stderr": ""
},
"phase3b_166700_sha256": {
"passed": true,
"returncode": 0,
"stderr": ""
},
"phase3b_audit_sha256": {
"passed": true,
"returncode": 0,
"stderr": ""
},
"raw_core_sha256": {
"passed": true,
"returncode": 0,
"stderr": ""
},
"raw_skeleton_md5": {
"passed": true,
"returncode": 0,
"stderr": ""
}
},
"Phase4C_to_4L": {
"all_passed": true,
"phase4c_to_4i": true,
"phase4j_to_4l": {
"phase4j_model_root": true,
"phase4j_root": true,
"phase4k_model_root": true,
"phase4k_root": true,
"phase4l_model_root": true,
"phase4l_root": true
}
},
"Phase4M_4N": {
"Phase4M experiment": {
"checked": 80,
"control": "/data/digital-drosophila/experiments/phase4m-kcmbon-efficacy/manifests/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4m-kcmbon-efficacy"
},
"Phase4M model": {
"checked": 7,
"control": "/data/digital-drosophila/models/male-cns-lif/kcmbon-efficacy-v1/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/kcmbon-efficacy-v1"
},
"Phase4N experiment": {
"checked": 396,
"control": "/data/digital-drosophila/experiments/phase4n-credit-assignment/manifests/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4n-credit-assignment"
},
"Phase4N model": {
"checked": 12,
"control": "/data/digital-drosophila/models/male-cns-lif/credit-assignment-v1/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/credit-assignment-v1"
}
},
"Phase4O": {
"checked": 40,
"control": "/data/digital-drosophila/experiments/phase4o-runtime-credit/manifests/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4o-runtime-credit"
},
"all_static_checks_passed": true,
"frozen_input_hashes_unchanged": true
},
"Phase4P_4R": {
"P": {
"checked": 86,
"control": "/data/digital-drosophila/experiments/phase4p-deterministic-runtime/manifests/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4p-deterministic-runtime"
},
"P_candidate": {
"checked": 10,
"control": "/data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2/candidate/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2/candidate"
},
"Q": {
"checked": 24,
"control": "/data/digital-drosophila/experiments/phase4q-credit-v3/manifests/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4q-credit-v3"
},
"Q_model": {
"checked": 6,
"control": "/data/digital-drosophila/models/male-cns-lif/credit-v3/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/credit-v3"
},
"R": {
"checked": 205,
"control": "/data/digital-drosophila/experiments/phase4r-timing-audit/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4r-timing-audit"
},
"R_model": {
"checked": 5,
"control": "/data/digital-drosophila/models/male-cns-lif/timing-audit-v1/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/timing-audit-v1"
}
},
"before_after_equal": true,
"pass": true,
"preregistered_source_hashes_unchanged": true
}
registry/catalog-20260929/evidence/phase4s-timing-credit/audit/mechanism-summary.json
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{
"credit_gate_pass": false,
"formal": null,
"heldout": {
"US_ms": 20,
"odors": [
{
"label": "CAL_A",
"mean_matched": 5.227997760474682,
"mean_random": 1.0743698491988085,
"pass": false,
"qualifying_seeds": 2,
"ratio": 4.8661061778431
},
{
"label": "CAL_B",
"mean_matched": 13.949498830735683,
"mean_random": 0.9832224948654573,
"pass": true,
"qualifying_seeds": 5,
"ratio": 14.187530191367836
}
],
"pass": false,
"same_event_vs_live_US_credit_exact": true,
"tau_ms": 1.6666666666666667,
"window_ms": 5
},
"isolated_endpoint": null,
"isolated_pass": null,
"performance": {
"CPU_percent_one_core": 100.1597987672896,
"GPU": "RTX 4090",
"GPU_utilization": "not sampled",
"peak_RAM_bytes": 2390188032,
"peak_VRAM_bytes": 398835200,
"runtime": "deterministic-runtime-v2",
"wall_seconds": 65.20485843999995
},
"regression_pass": true,
"scope": "Open-loop credit accumulation and replay; no learned weights fed back into trial generation; no associative memory claim.",
"status": "FAIL-TIMING-VALIDATION",
"timing": {
"US_ms": 20,
"odors": [
{
"label": "CAL_A",
"mean_matched": 16.84718619287014,
"mean_random": 1.0058354312802353,
"pass": true,
"qualifying_seeds": 5,
"ratio": 16.749445952035025
},
{
"label": "CAL_B",
"mean_matched": 13.210326346755028,
"mean_random": 0.9092246815313896,
"pass": true,
"qualifying_seeds": 5,
"ratio": 14.529221011142296
}
],
"pass": true,
"tau_ms": 1.6666666666666667,
"window_ms": 5
},
"timing_gate_pass": false,
"whole": null
}
registry/catalog-20260929/evidence/phase4s-timing-credit/audit/preflight.json
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{
"P": {
"checked": 86,
"control": "/data/digital-drosophila/experiments/phase4p-deterministic-runtime/manifests/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4p-deterministic-runtime"
},
"P_candidate": {
"checked": 10,
"control": "/data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2/candidate/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2/candidate"
},
"Q": {
"checked": 24,
"control": "/data/digital-drosophila/experiments/phase4q-credit-v3/manifests/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4q-credit-v3"
},
"Q_model": {
"checked": 6,
"control": "/data/digital-drosophila/models/male-cns-lif/credit-v3/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/credit-v3"
},
"R": {
"checked": 205,
"control": "/data/digital-drosophila/experiments/phase4r-timing-audit/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/experiments/phase4r-timing-audit"
},
"R_model": {
"checked": 5,
"control": "/data/digital-drosophila/models/male-cns-lif/timing-audit-v1/checksums.sha256",
"failures": [],
"passed": true,
"root": "/data/digital-drosophila/models/male-cns-lif/timing-audit-v1"
}
}
registry/catalog-20260929/evidence/phase4s-timing-credit/audit/results.json
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{
"associative_memory_claim": false,
"calibration": {
"US_ms": 20,
"odors": [
{
"label": "CAL_A",
"mean_matched": 16.84718619287014,
"mean_random": 1.0058354312802353,
"pass": true,
"qualifying_seeds": 5,
"ratio": 16.749445952035025
},
{
"label": "CAL_B",
"mean_matched": 13.210326346755028,
"mean_random": 0.9092246815313896,
"pass": true,
"qualifying_seeds": 5,
"ratio": 14.529221011142296
}
],
"pass": true,
"tau_ms": 1.6666666666666667,
"window_ms": 5
},
"credit_candidate": false,
"formal": null,
"heldout": {
"US_ms": 20,
"odors": [
{
"label": "CAL_A",
"mean_matched": 5.227997760474682,
"mean_random": 1.0743698491988085,
"pass": false,
"qualifying_seeds": 2,
"ratio": 4.8661061778431
},
{
"label": "CAL_B",
"mean_matched": 13.949498830735683,
"mean_random": 0.9832224948654573,
"pass": true,
"qualifying_seeds": 5,
"ratio": 14.187530191367836
}
],
"pass": false,
"same_event_vs_live_US_credit_exact": true,
"tau_ms": 1.6666666666666667,
"window_ms": 5
},
"integrity_pass": true,
"isolated": null,
"phase": "4S",
"regression_pass": true,
"status": "FAIL-TIMING-VALIDATION",
"timing_candidate": false,
"whole": null
}