Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

2026-09-29 03:38:32 +08:00
commit 3981628ff8
682 changed files with 161475 additions and 0 deletions
@@ -0,0 +1,77 @@
+{
+  "all_passed": false,
+  "dynamic_regression_all_passed": false,
+  "phase4c_reference_replay_first": {
+    "all_passed": false,
+    "auditory-100hz": {
+      "max_abs_g_error": 0.00048828125,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "auditory-10hz": {
+      "max_abs_g_error": 0.00048828125,
+      "max_abs_voltage_error": 3.0517578125e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "gustatory-50hz": {
+      "max_abs_g_error": 0.00390625,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "mechanosensory-50hz": {
+      "max_abs_g_error": 444.85986328125,
+      "max_abs_voltage_error": 314.9923400878906,
+      "per_neuron_counts_exact": false,
+      "spike_events_exact": false
+    },
+    "olfactory-50hz": {
+      "max_abs_g_error": 0.001953125,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    }
+  },
+  "phase4c_reference_replay_second": {
+    "all_passed": false,
+    "auditory-100hz": {
+      "max_abs_g_error": 0.0009765625,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "auditory-10hz": {
+      "max_abs_g_error": 0.000244140625,
+      "max_abs_voltage_error": 3.0517578125e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "gustatory-50hz": {
+      "max_abs_g_error": 0.001953125,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "mechanosensory-50hz": {
+      "max_abs_g_error": 444.85986328125,
+      "max_abs_voltage_error": 314.9923400878906,
+      "per_neuron_counts_exact": false,
+      "spike_events_exact": false
+    },
+    "olfactory-50hz": {
+      "max_abs_g_error": 0.00048828125,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    }
+  },
+  "static": {
+    "frozen_hashes_unchanged": true,
+    "phase1_to_3b": true,
+    "phase4m": true,
+    "previous_phases": true
+  },
+  "static_checksums_all_passed": true
+}
@@ -0,0 +1,88 @@
+{
+  "APL_v2_encoder_mask_unmodified": true,
+  "all_passed": false,
+  "base_csr_unmodified": true,
+  "before_after_identical": true,
+  "phase1_to_3b": {
+    "all_passed": true,
+    "phase1_phase2_backup_sha256": {
+      "passed": true,
+      "returncode": 0,
+      "stderr": ""
+    },
+    "phase3_sha256": {
+      "passed": true,
+      "returncode": 0,
+      "stderr": ""
+    },
+    "phase3b_166700_sha256": {
+      "passed": true,
+      "returncode": 0,
+      "stderr": ""
+    },
+    "phase3b_audit_sha256": {
+      "passed": true,
+      "returncode": 0,
+      "stderr": ""
+    },
+    "raw_core_sha256": {
+      "passed": true,
+      "returncode": 0,
+      "stderr": ""
+    },
+    "raw_skeleton_md5": {
+      "passed": true,
+      "returncode": 0,
+      "stderr": ""
+    }
+  },
+  "phase4c_reference_regression": {
+    "all_passed": false,
+    "auditory-100hz": {
+      "max_abs_g_error": 0.00048828125,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "auditory-10hz": {
+      "max_abs_g_error": 0.00048828125,
+      "max_abs_voltage_error": 3.0517578125e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "gustatory-50hz": {
+      "max_abs_g_error": 0.00390625,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    },
+    "mechanosensory-50hz": {
+      "max_abs_g_error": 444.85986328125,
+      "max_abs_voltage_error": 314.9923400878906,
+      "per_neuron_counts_exact": false,
+      "spike_events_exact": false
+    },
+    "olfactory-50hz": {
+      "max_abs_g_error": 0.001953125,
+      "max_abs_voltage_error": 6.103515625e-05,
+      "per_neuron_counts_exact": true,
+      "spike_events_exact": true
+    }
+  },
+  "phase4c_to_4l": {
+    "all_passed": true,
+    "phase4c_to_4i": true,
+    "phase4j_to_4l": {
+      "phase4j_model_root": true,
+      "phase4j_root": true,
+      "phase4k_model_root": true,
+      "phase4k_root": true,
+      "phase4l_model_root": true,
+      "phase4l_root": true
+    }
+  },
+  "phase4m": {
+    "phase4m_exp": true,
+    "phase4m_model": true
+  }
+}
@@ -0,0 +1,7 @@
+{
+  "corrected_checkpoint": 50,
+  "identity_and_E_trajectories_unchanged": true,
+  "not_a_learning_parameter_change": true,
+  "original_checkpoint": 60,
+  "reason": "50 and 60 have the same five-seed spike-L1 separation; latency difference is sub-femtosecond float summation noise, far below 0.1 ms simulation dt. Earliest-tie rule selects 50."
+}
@@ -0,0 +1,25 @@
+phase: 4N
+name: MaleCNS-CreditAssignment-audit
+frozen_phase4m_config: /data/digital-drosophila/models/male-cns-lif/kcmbon-efficacy-v1/phase4m.yaml
+experiment_root: /data/digital-drosophila/experiments/phase4n-credit-assignment
+model_root: /data/digital-drosophila/models/male-cns-lif/credit-assignment-v1
+mechanism: bounded_multiplicative
+checkpoints: [0, 1, 2, 5, 10, 20, 30, 40, 50, 60, 75, 100]
+train_seeds: [51201, 51202, 51203, 51204, 51205]
+evaluation_seeds: [51301, 51302, 51303, 51304, 51305]
+edge_identity_source: phase4l matched_energy held-out ODOR_A/B majority-of-five KC representation
+credit_specificity_index: group mean anatomical-weighted E depression for A-specific minus maximum of shared and B-specific groups
+functional_separation: A MBON spike-count L1 change minus B MBON spike-count L1 change; first-spike latency used only as tie-breaker
+peak_rule: earliest checkpoint with at least 3 of 5 A-specific functional seeds and maximum five-seed mean spike-L1 separation; spike-L1 ties within 1e-9 use mean first-latency separation only if difference exceeds half a dt step (0.05 ms), otherwise choose earliest; no peak if no such checkpoint
+generalization_onset_rule: earliest checkpoint after peak with CSI at least 20 percent below peak and shared-or-B group depression at least 10 percent above its peak value; otherwise unidentified
+random_us_seed_offset: 700000
+random_us_window_ms: [30.0, 110.0]
+shadow_trace_tau_ms: 20.0
+event_coincidence_window_ms: 1.0
+first_activation_only: true
+matched_compartment_verbatim: "y5B'2a"
+unrelated_compartment_verbatim: "y2a'1"
+matched_dan_type: PAM15
+unrelated_dan_type: PPL103
+no_frozen_artifact_writes: true
+no_formal_associative_memory_claim: true