Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

This commit is contained in:
Digital Drosophila Archive
2026-09-29 03:38:32 +08:00
commit 3981628ff8
682 changed files with 161475 additions and 0 deletions
@@ -0,0 +1,77 @@
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@@ -0,0 +1,25 @@
phase: 4N
name: MaleCNS-CreditAssignment-audit
frozen_phase4m_config: /data/digital-drosophila/models/male-cns-lif/kcmbon-efficacy-v1/phase4m.yaml
experiment_root: /data/digital-drosophila/experiments/phase4n-credit-assignment
model_root: /data/digital-drosophila/models/male-cns-lif/credit-assignment-v1
mechanism: bounded_multiplicative
checkpoints: [0, 1, 2, 5, 10, 20, 30, 40, 50, 60, 75, 100]
train_seeds: [51201, 51202, 51203, 51204, 51205]
evaluation_seeds: [51301, 51302, 51303, 51304, 51305]
edge_identity_source: phase4l matched_energy held-out ODOR_A/B majority-of-five KC representation
credit_specificity_index: group mean anatomical-weighted E depression for A-specific minus maximum of shared and B-specific groups
functional_separation: A MBON spike-count L1 change minus B MBON spike-count L1 change; first-spike latency used only as tie-breaker
peak_rule: earliest checkpoint with at least 3 of 5 A-specific functional seeds and maximum five-seed mean spike-L1 separation; spike-L1 ties within 1e-9 use mean first-latency separation only if difference exceeds half a dt step (0.05 ms), otherwise choose earliest; no peak if no such checkpoint
generalization_onset_rule: earliest checkpoint after peak with CSI at least 20 percent below peak and shared-or-B group depression at least 10 percent above its peak value; otherwise unidentified
random_us_seed_offset: 700000
random_us_window_ms: [30.0, 110.0]
shadow_trace_tau_ms: 20.0
event_coincidence_window_ms: 1.0
first_activation_only: true
matched_compartment_verbatim: "y5B'2a"
unrelated_compartment_verbatim: "y2a'1"
matched_dan_type: PAM15
unrelated_dan_type: PPL103
no_frozen_artifact_writes: true
no_formal_associative_memory_claim: true
@@ -0,0 +1,36 @@
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@@ -0,0 +1,127 @@
{
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{
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"all_DAN_gate": "RUN-OPEN-LOOP-SHADOW-100-PAIRING-TRAJECTORY",
"external_US_only": "RUN-IDENTICAL-TO-PHASE4M",
"frozen_E1": "ANALYTIC-EXACT-IDENTITY",
"full_control_matrix_pass": false,
"independent_results": "controls/independent-summary.json",
"independent_wholebrain": "controls/wholebrain-summary.json",
"random_US_timing": "RUN-INDEPENDENT-100-PAIRING-TRAJECTORY",
"unrelated_compartment_US": "RUN-INDEPENDENT-100-PAIRING-TRAJECTORY"
}
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{
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}
],
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"rows": 60,
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}
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{
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"policy": "Phase 4M implementation opens plasticity once at imposed 90 ms US, not at endogenous DAN spike times"
}
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{
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}
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