Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

2026-09-29 03:38:32 +08:00
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+phase: 4K
+name: MaleCNS-KC-recruitment-MBON-causal-audit-v1
+
+paths:
+  connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
+  dataset_root: /data/digital-drosophila/datasets/male-cns-v1.0
+  model_root: /data/digital-drosophila/models/male-cns-lif
+  phase4k_model_root: /data/digital-drosophila/models/male-cns-lif/kc-recruitment-audit-v1
+  experiment_root: /data/digital-drosophila/experiments/phase4k-kc-recruitment-audit
+  reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
+  runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
+  io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
+  phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
+  phase4d_root: /data/digital-drosophila/experiments/phase4d-io
+  phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
+  phase4f_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
+  phase4f_model_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
+  phase4g_root: /data/digital-drosophila/experiments/phase4g-frozen-interface
+  phase4g_model_root: /data/digital-drosophila/models/male-cns-lif/frozen-interface-v1
+  phase4g_learned_root: /data/digital-drosophila/models/learned/phase4g
+  phase4h_root: /data/digital-drosophila/experiments/phase4h-dopamine-plasticity
+  phase4h_model_root: /data/digital-drosophila/models/male-cns-lif/dopamine-plasticity-v1
+  phase4h_learned_root: /data/digital-drosophila/models/learned/phase4h
+  phase4i_root: /data/digital-drosophila/experiments/phase4i-mb-mechanistic-validation
+  phase4i_model_root: /data/digital-drosophila/models/male-cns-lif/mb-mechanistic-v1
+  phase4j_root: /data/digital-drosophila/experiments/phase4j-mb-physiology-repair
+  phase4j_model_root: /data/digital-drosophila/models/male-cns-lif/mb-physiology-v1
+
+names:
+  reference: MaleCNS-LIF-reference-v1
+  runtime: MaleCNS-LIF-runtime-v1
+
+model:
+  dt_ms: 0.1
+  membrane_tau_ms: 20.0
+  synaptic_tau_ms: 5.0
+  refractory_ms: 2.2
+  resting_potential_mv: -52.0
+  reset_potential_mv: -52.0
+  threshold_mv: -45.0
+  synaptic_delay_ms: 1.8
+  w_syn_mv_per_anatomical_synapse: 0.275
+
+sign_policy:
+  neurotransmitter_sign: {acetylcholine: 1, gaba: -1, glutamate: -1, dopamine: 1, octopamine: 1, serotonin: 1, histamine: -1}
+  unknown_sign: 0
+  unclear_sign: 0
+
+readout:
+  bins_ms: [1, 5, 10, 20, 50, 100]
+
+device:
+  required_name_substring: RTX 4090
+  launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
+
+expected_graph:
+  neurons: 166700
+  directed_edges: 25582938
+  synaptic_contact_weight_sum: 124177617
+  phase4h_plastic_candidate_edges: 14232
+  plastic_mask_edges: 14232
+
+apl_overlay:
+  name: APL-Graded-Inhibition-v1
+  tau_ms: 20.0
+  gain: 0.01
+  normalization: 1.0
+  immutable_phase4j_parameters: true
+
+direct_kc:
+  target_compartment_verbatim: "y5B'2a"
+  matched_dan_type: PAM15
+  pulse_times_ms: [10.0, 30.0, 50.0, 70.0, 90.0]
+  dan_time_ms: 90.0
+  duration_ms: 120.0
+  trace_seed: 50201
+  evaluation_seed: 50301
+
+olfactory:
+  rate_hz: 50.0
+  duration_ms: 100.0
+  seed: 50101
+  targets_per_cs: 64
+
+sensitivity:
+  depression_fractions: [0.0, 0.01, 0.05, 0.10, 0.25, 0.50]
+  evaluation_seeds: [50301, 50302, 50303, 50304, 50305]
+  functional_change_definition: any_MBON_spike_count_or_first_latency_change
+
+causal_attribution:
+  rule: dominant_positive_synaptic_arrival_with_runtime_g_decay
+  exact_delay_steps: 18
+  shortest_static_path_forbidden: true
+
+prohibitions:
+  training: false
+  modify_eta_or_eligibility_v2: false
+  expand_plastic_mask: false
+  modify_threshold_or_gain: false
+  save_sensitivity_as_learned_model: false
+  decoder_classifier_rl_game_visual: false