Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

2026-09-29 03:38:32 +08:00
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+phase: 4G
+names:
+  reference: MaleCNS-LIF-reference-v1
+  runtime: MaleCNS-LIF-runtime-v1
+  io_api: MaleCNS-BrainIO-v1
+  activity_stream: MaleCNS-ActivityStream-v1
+  interface: MaleCNS-FrozenInterface-v1
+  candidate: MaleCNS-FrozenInterface-v1-candidate
+
+paths:
+  connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
+  model_root: /data/digital-drosophila/models/male-cns-lif
+  reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
+  runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
+  io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
+  phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
+  phase4d_root: /data/digital-drosophila/experiments/phase4d-io
+  phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
+  phase4f_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
+  phase4f_model_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
+  interface_root: /data/digital-drosophila/models/male-cns-lif/frozen-interface-v1
+  learned_root: /data/digital-drosophila/models/learned/phase4g
+  experiment_root: /data/digital-drosophila/experiments/phase4g-frozen-interface
+
+device:
+  required_name_substring: RTX 4090
+  launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
+
+model:
+  dt_ms: 0.1
+  membrane_tau_ms: 20.0
+  synaptic_tau_ms: 5.0
+  refractory_ms: 2.2
+  resting_potential_mv: -52.0
+  reset_potential_mv: -52.0
+  threshold_mv: -45.0
+  synaptic_delay_ms: 1.8
+  w_syn_mv_per_anatomical_synapse: 0.275
+
+sign_policy:
+  neurotransmitter_sign: {acetylcholine: 1, gaba: -1, glutamate: -1, dopamine: 1, octopamine: 1, serotonin: 1, histamine: -1}
+  unknown_sign: 0
+  unclear_sign: 0
+
+dataset:
+  patterns: [left-spot, right-spot, upper-spot, lower-spot, left-to-right, right-to-left, up-to-down, down-to-up, looming, sparse-moving-object, static-object, full-field]
+  train_stimulus_seeds: [47001, 47002, 47003, 47004, 47005]
+  evaluation_stimulus_seeds: [47101, 47102, 47103]
+  biological_windows_ms: [10, 20, 30, 50, 100]
+  temporal_segments: 5
+  targets_per_segment: 460
+  poisson_rate_hz: 50.0
+  external_drive_mv: 8.8
+  tasks:
+    left-right: {patterns: [left-spot, right-spot], labels: [0, 1], classes: 2}
+    up-down: {patterns: [upper-spot, lower-spot], labels: [0, 1], classes: 2}
+    moving-static: {patterns: [sparse-moving-object, static-object], labels: [0, 1], classes: 2}
+    looming-translation: {patterns: [looming, left-to-right], labels: [0, 1], classes: 2}
+    spatial-4way: {patterns: [left-spot, right-spot, upper-spot, lower-spot], labels: [0, 1, 2, 3], classes: 4}
+    motion-4way: {patterns: [left-to-right, right-to-left, up-to-down, down-to-up], labels: [0, 1, 2, 3], classes: 4}
+
+training:
+  model_seeds: [47201, 47202, 47203, 47204, 47205]
+  evaluation_seeds: [47101, 47102, 47103]
+  epochs: 120
+  learning_rate: 0.02
+  capacities:
+    Tiny: {feature_bins: 32, decoder: linear, encoder_parameters: 2}
+    Small: {feature_bins: 128, decoder: mlp, hidden: 16, encoder_parameters: 24}
+  abstract_actions: 4
+
+controls:
+  graph_seed: 47300
+  graphs: [real-malecns, shuffled-edges, degree-preserving, brain-bypass]
+  shuffled_definition: independent uniform target per existing CSR edge slot; source degrees and edge count preserved
+  degree_preserving_definition: global permutation of original target array; exact source out-degree and target in-degree preserved
+
+robustness:
+  task: spatial-4way
+  conditions: [input-noise, event-dropout, neuron-dropout, adapter-noise, partial-occlusion, temporal-jitter]
+  perturbation_fraction: 0.15
+
+readout:
+  bins_ms: [1, 5, 10, 20, 50]
+
+regression:
+  float_absolute_tolerance: 0.00390625
+  reference_trials:
+    - {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
+    - {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
+    - {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+    - {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+    - {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+
+success_gate:
+  stable_accuracy_margin_over_chance: 0.10
+  successful_model_seed_majority: 3
+  require_descending_or_motor_information: true
+  require_control_difference: true
+  bypass_too_easy_accuracy: 0.95
+
+prohibitions:
+  brain_backpropagation: false
+  connectome_changes: false
+  transmitter_sign_changes: false
+  brain_gain_changes: false
+  internal_weight_changes: false
+  lif_parameter_changes: false
+  game_rom: false
+  stable_retro: false
+  reinforcement_learning: false
+  dopamine_stdp: false
+  web_server: false
+  three_d_frontend: false