Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
This commit is contained in:
Digital Drosophila Archive
@@ -0,0 +1,54 @@
|
||||
{
|
||||
"all_passed": true,
|
||||
"checkpoint_restore_spikes_exact": true,
|
||||
"checkpoint_restore_voltage_exact": true,
|
||||
"continuous_step_does_not_reset_clock": true,
|
||||
"fixed_temporal_bins_tested": {
|
||||
"1": [
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
1,
|
||||
0
|
||||
],
|
||||
"10": [
|
||||
0,
|
||||
1,
|
||||
0
|
||||
],
|
||||
"20": [
|
||||
1,
|
||||
0
|
||||
],
|
||||
"5": [
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
1,
|
||||
0
|
||||
]
|
||||
},
|
||||
"per_class_aggregation_labels": 1,
|
||||
"per_neuron_readout_shape": 1316,
|
||||
"per_type_aggregation_labels": 481,
|
||||
"readout_modes_passed": true,
|
||||
"reset_same_seed_continuous_chunk_spikes_exact": true,
|
||||
"single_vs_chunk_voltage_max_abs_error": 0.0,
|
||||
"timestamps_present": true
|
||||
}
|
||||
@@ -0,0 +1,4 @@
|
||||
{
|
||||
"route-a-malecns-native": true,
|
||||
"route-b-flyvis-assisted": true
|
||||
}
|
||||
+80
@@ -0,0 +1,80 @@
|
||||
{
|
||||
"official_tbar_snapshot": {
|
||||
"aggregation": "body-level area_to_count-weighted means; official body property used verbatim",
|
||||
"annotation_count": 6168244,
|
||||
"coordinate_space": {
|
||||
"x": [
|
||||
8e-09,
|
||||
"m"
|
||||
],
|
||||
"y": [
|
||||
8e-09,
|
||||
"m"
|
||||
],
|
||||
"z": [
|
||||
8e-09,
|
||||
"m"
|
||||
]
|
||||
},
|
||||
"lower_bound": [
|
||||
23472,
|
||||
5028,
|
||||
11713
|
||||
],
|
||||
"official_property_schema": [
|
||||
"hex1",
|
||||
"hex2",
|
||||
"area_to_count",
|
||||
"r",
|
||||
"theta",
|
||||
"v",
|
||||
"h",
|
||||
"ht",
|
||||
"vic",
|
||||
"area_fit",
|
||||
"body",
|
||||
"roi"
|
||||
],
|
||||
"output": "retinotopy-tbars-body-summary.parquet",
|
||||
"sha256": "dbb4de578bc576c989c0a92be0d5cb29989770d750689255f6639a912234602c",
|
||||
"source_url": "https://storage.googleapis.com/flyem-male-cns/auxiliary-data/retinotopy-tbars/retinotopy_tbar_olr-2026-06-26.precomputed",
|
||||
"unique_body_count": 580,
|
||||
"upper_bound": [
|
||||
73303,
|
||||
47161,
|
||||
41366
|
||||
],
|
||||
"wall_seconds": 347.15394187700076
|
||||
},
|
||||
"paper": {
|
||||
"doi": "10.1016/j.cell.2026.08.014",
|
||||
"role": "official visual-pathway definition reference"
|
||||
},
|
||||
"repositories": {
|
||||
"celltype-explorer": {
|
||||
"commit": "789cc6c105798ce2fd70ba85dab394f90899616b",
|
||||
"expected_commit": "789cc6c105798ce2fd70ba85dab394f90899616b",
|
||||
"license": "CC-BY-4.0",
|
||||
"license_files": [
|
||||
"/data/digital-drosophila/experiments/phase4f-retinotopic-vision/external-resources/celltype-explorer/LICENSE"
|
||||
],
|
||||
"url": "https://github.com/reiserlab/celltype-explorer-drosophila-male-cns"
|
||||
},
|
||||
"flyvis": {
|
||||
"commit": "92b3845cc426dd309a1a0e1b3890156c42e14021",
|
||||
"expected_commit": "92b3845cc426dd309a1a0e1b3890156c42e14021",
|
||||
"license": "MIT",
|
||||
"license_files": [],
|
||||
"url": "https://github.com/TuragaLab/flyvis"
|
||||
},
|
||||
"visualpathways": {
|
||||
"commit": "23f6ac131529b5f56894c6eeb9b88b17894fc00d",
|
||||
"expected_commit": "23f6ac131529b5f56894c6eeb9b88b17894fc00d",
|
||||
"license": "GPL-3.0",
|
||||
"license_files": [
|
||||
"/data/digital-drosophila/experiments/phase4f-retinotopic-vision/external-resources/visualpathways/LICENSE"
|
||||
],
|
||||
"url": "https://github.com/reiserlab/visualpathways"
|
||||
}
|
||||
}
|
||||
}
|
||||
+47
@@ -0,0 +1,47 @@
|
||||
{
|
||||
"all_passed": true,
|
||||
"controls": [
|
||||
{
|
||||
"checked": 4,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/reference-v1/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 7,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/runtime-v1/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 5,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/io-v1/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 73,
|
||||
"checksum_file": "/data/digital-drosophila/experiments/phase4c-runtime/manifests/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 43,
|
||||
"checksum_file": "/data/digital-drosophila/experiments/phase4d-io/manifests/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 166,
|
||||
"checksum_file": "/data/digital-drosophila/experiments/phase4e-visual-calibration/manifests/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 5,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/visual-interface-v2/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
}
|
||||
]
|
||||
}
|
||||
+60
@@ -0,0 +1,60 @@
|
||||
{
|
||||
"route-a-malecns-native": {
|
||||
"46101": {
|
||||
"amplitudes_mv": [
|
||||
19773.60051059723
|
||||
],
|
||||
"event_counts": [
|
||||
2247
|
||||
],
|
||||
"matched": true
|
||||
},
|
||||
"46102": {
|
||||
"amplitudes_mv": [
|
||||
20389.6005153656
|
||||
],
|
||||
"event_counts": [
|
||||
2317
|
||||
],
|
||||
"matched": true
|
||||
},
|
||||
"46103": {
|
||||
"amplitudes_mv": [
|
||||
20204.800518989563
|
||||
],
|
||||
"event_counts": [
|
||||
2296
|
||||
],
|
||||
"matched": true
|
||||
}
|
||||
},
|
||||
"route-b-flyvis-assisted": {
|
||||
"46101": {
|
||||
"amplitudes_mv": [
|
||||
19773.60051059723
|
||||
],
|
||||
"event_counts": [
|
||||
2247
|
||||
],
|
||||
"matched": true
|
||||
},
|
||||
"46102": {
|
||||
"amplitudes_mv": [
|
||||
20389.6005153656
|
||||
],
|
||||
"event_counts": [
|
||||
2317
|
||||
],
|
||||
"matched": true
|
||||
},
|
||||
"46103": {
|
||||
"amplitudes_mv": [
|
||||
20204.800518989563
|
||||
],
|
||||
"event_counts": [
|
||||
2296
|
||||
],
|
||||
"matched": true
|
||||
}
|
||||
}
|
||||
}
|
||||
File diff suppressed because it is too large
Load Diff
Reference in New Issue
Block a user