Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

2026-09-29 03:38:32 +08:00
commit 3981628ff8
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+phase: 4C
+names:
+  reference: MaleCNS-LIF-reference-v1
+  runtime: MaleCNS-LIF-runtime-v1
+  description: Shiu-like LIF dynamics adapted to MaleCNS v1.0
+
+paths:
+  connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
+  phase4b_root: /data/digital-drosophila/experiments/phase4b-dynamics
+  model_root: /data/digital-drosophila/models/male-cns-lif
+  experiment_root: /data/digital-drosophila/experiments/phase4c-runtime
+
+expected_graph:
+  neurons: 166700
+  directed_edges: 25582938
+  synaptic_contact_weight_sum: 124177617
+  isolated_neurons: 217
+  self_loops: 101
+
+device:
+  required_name_substring: RTX 4090
+  launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
+  mixed_multi_gpu: false
+
+model:
+  dt_ms: 0.1
+  membrane_tau_ms: 20.0
+  synaptic_tau_ms: 5.0
+  refractory_ms: 2.2
+  resting_potential_mv: -52.0
+  reset_potential_mv: -52.0
+  threshold_mv: -45.0
+  synaptic_delay_ms: 1.8
+  w_syn_mv_per_anatomical_synapse: 0.275
+  integration: forward_euler
+  refractory_g_policy: g continues to decay and receive exact delayed events while v is clamped at V_reset
+
+sign_policy:
+  neurotransmitter_sign:
+    acetylcholine: 1
+    gaba: -1
+    glutamate: -1
+    histamine: -1
+    dopamine: 1
+    octopamine: 1
+    serotonin: 1
+  unknown_sign: 0
+  unclear_sign: 0
+  unmapped_policy: error
+
+sensory_populations:
+  visual:
+    expression: annotation_class == 'visual'
+  mechanosensory:
+    expression: annotation_class in {'mechanosensory','mechanosensory_tactile','mechanosensory_proprioceptive'} and annotation_subclass != 'auditory'
+  olfactory:
+    expression: annotation_class == 'olfactory'
+  gustatory:
+    expression: annotation_class == 'gustatory'
+  auditory:
+    expression: annotation_subclass == 'auditory'
+
+reference_trials:
+  - {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
+  - {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
+  - {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+  - {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+  - {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+
+visual_dynamics:
+  duration_ms: 100.0
+  rate_hz: 50
+  seed: 43100
+  tonic_histamine_baseline_hz: 50
+  modulation_rate_hz: 10
+  modulation_start_ms: 50.0
+
+benchmark:
+  population: auditory
+  rate_hz: 10
+  seed: 43200
+  durations_ms: [10.0, 100.0, 1000.0, 10000.0]
+  gpu_sample_interval_seconds: 0.1
+  backends: [eager, hybrid-exact, compile-default, compile-reduce-overhead, cudagraph-custom-state, custom-cuda]
+  warmup_ms: 10.0
+
+regression:
+  require_exact_spike_events: true
+  float_absolute_tolerance: 1.0e-5
+  reject_on_spike_divergence: true
+
+reproducibility:
+  global_seed: 43000
+  local_repository_commit: d826733f1c620a2ad0b096c846b9b8e9eb3ac0fa
+  deterministic_forced_inputs: true
+  source_phase: Phase 4B PASS
+
+prohibitions:
+  alter_connectome: false
+  alter_raw_synapse_counts: false
+  alter_transmitter_signs: false
+  train_weights: false
+  game_rl_web_3d: false