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Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

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Digital Drosophila Archive
2026-09-29 03:38:32 +08:00
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registry/catalog-20260929/evidence/phase4a-baseline/audit/manifest.json
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"status": "PASS"
}
registry/catalog-20260929/evidence/phase4a-baseline/config/baseline.yaml
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phase: 4A
paths:
connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
experiment_root: /data/digital-drosophila/experiments/phase4a-baseline
expected_graph:
neurons: 166700
directed_edges: 25582938
synaptic_contact_weight_sum: 124177617
isolated_neurons: 217
self_loops: 101
device:
required_name_substring: RTX 4090
launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
mixed_multi_gpu: false
model:
integrator: forward_euler
dt_ms: 0.1
membrane_tau_ms: 20.0
synaptic_tau_ms: 5.0
refractory_ms: 2.2
resting_potential_mv: -52.0
reset_potential_mv: -52.0
threshold_mv: -45.0
synaptic_delay_ms: 1.8
parameter_provenance: FlyWire-inspired 2024 LIF baseline; not MaleCNS measured single-cell parameters
sign_policy:
neurotransmitter_sign:
acetylcholine: 1
gaba: -1
glutamate: -1
dopamine: 1
octopamine: 1
serotonin: 1
histamine: -1
histamine_policy_note: explicitly configured inhibitory baseline assumption; not silently inferred
unknown_sign: 0
unclear_sign: 0
unmapped_policy: error
unmapped_sign: 0
weights:
transform: sqrt
supported_transforms: [linear, sqrt, log1p]
scale: 0.05
chunk_edges: 2000000
units: model synaptic-state increment per presynaptic spike
formula: effective_weight = presynaptic_sign * scale * f(raw_synapse_count)
preserve_raw_int64: true
stimulations:
single_neuron:
kind: single_neuron_pulse
neuron_idx: 0
start_ms: 2.0
duration_ms: 1.0
amplitude_mv_equivalent: 400.0
known_type_AMMC005:
kind: known_type_pulse
type_name: AMMC005
max_neurons: 12
start_ms: 5.0
duration_ms: 1.0
amplitude_mv_equivalent: 400.0
sparse_poisson:
kind: sparse_poisson
target_fraction: 0.001
rate_hz: 20.0
event_amplitude_mv_equivalent: 1600.0
smoke_tests:
- name: smoke-10ms-single-neuron
duration_ms: 10.0
stimulation: single_neuron
seed: 41001
- name: smoke-100ms-known-type
duration_ms: 100.0
stimulation: known_type_AMMC005
seed: 41002
- name: smoke-1s-sparse-poisson
duration_ms: 1000.0
stimulation: sparse_poisson
seed: 41003
cpu_gpu_reference:
seed: 41100
subgraph_neurons: 512
steps: 100
pulse_start_step: 5
pulse_steps: 10
pulse_neurons: 4
pulse_amplitude_mv_equivalent: 400.0
absolute_tolerance: 1.0e-10
validation:
finite_check_interval_steps: 100
explosive_step_fraction: 0.1
memory_growth_tolerance_bytes: 10485760
output:
spike_representation: event_table_timestamp_ms_neuron_idx
dense_time_by_neuron_forbidden: true
rate_window_ms: 10.0
reproducibility:
seed: 41000
deterministic_synthetic_inputs: true