Archive MaleCNS research sources, provenance, bibliography and immutable data inventory
This commit is contained in:
Digital Drosophila Archive
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# 机器可读登记与完整性
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- `snapshots/bootstrap-20260929/files.jsonl.gz`：逐文件 UTF-8 JSONL，gzip 压缩；原科学树的 SHA-256、bytes、mtime_ns、mode 或 symlink target。
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- `snapshots/bootstrap-20260929/summary.json`：范围、排除项、分组逻辑大小和清单自身 SHA-256。
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- `catalog-20260929/stages.json`：27 个阶段证据索引。
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- `catalog-20260929/evidence/`：373 份小型原始报告/配置/审计的字节一致副本；原文件仍在 experiments。
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- `catalog-20260929/evidence-index.json`：每份副本的原路径与 SHA-256。
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- `catalog-20260929/external-resources.lock.json`：4 个外部仓库 commit/origin/许可证证据。
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- `catalog-20260929/source-citations.json`：从项目源码和文档抽出的 URL/DOI 候选及来源哈希；不是自动有效性判定。
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- `catalog-20260929/environment.json`：当前环境版本快照。
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- `bootstrap-verification.json`：本次仓库整理后的全量科学文件复核结果。
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快照不包含虚拟环境、缓存和外部 .git；详情始终以 summary 中排除项为准。
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校验包含路径集合检查，发现丢失/新增也报告；不修改被校验文件。
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新快照必须使用新目录，不覆盖旧 snapshot。目录/清单不包含服务器密码或 SSH 私钥。
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这些文件是索引，不是数据内容；不能从 SHA-256 反推出原文件。
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@@ -0,0 +1,19 @@
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{
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"added": [],
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"checked": 230239,
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"checked_utc": "2026-09-28T19:34:56.858104+00:00",
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"excluded_directory_names": [
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".cache",
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".git",
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".mypy_cache",
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".pytest_cache",
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".venv",
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"__pycache__",
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"node_modules",
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"venv"
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],
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"missing": [],
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"pass": true,
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"snapshot_sha256": "6f186112e6102f2f7969de7442fa7ee4432200a3678586cfc4e10c490b31bca4"
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}
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{
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"captured_utc": "2026-09-28T19:27:28.156020+00:00",
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"git": {
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},
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"gpu": {
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"stderr": "",
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"stdout": "Tesla V100-SXM2-16GB, 16384 MiB, 580.178.04\nTesla V100-SXM2-16GB, 16384 MiB, 580.178.04\nNVIDIA GeForce RTX 4090, 49140 MiB, 580.178.04"
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"historical_environment_guaranteed": false,
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},
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"stdout": "Linux ai 5.15.0-194-generic #204-Ubuntu SMP Wed Sep 2 13:09:23 UTC 2026 x86_64 x86_64 x86_64 GNU/Linux"
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"stdout": "Python 3.10.12"
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}
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File diff suppressed because it is too large
Load Diff
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{
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
],
|
||||
"stimulation": "sparse_poisson",
|
||||
"stimulation_kind": "sparse_poisson",
|
||||
"total_spikes": 3234,
|
||||
"wall_clock_seconds": 7.301688167000066
|
||||
}
|
||||
],
|
||||
"status": "PASS"
|
||||
}
|
||||
@@ -0,0 +1,110 @@
|
||||
phase: 4A
|
||||
paths:
|
||||
connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
|
||||
experiment_root: /data/digital-drosophila/experiments/phase4a-baseline
|
||||
|
||||
expected_graph:
|
||||
neurons: 166700
|
||||
directed_edges: 25582938
|
||||
synaptic_contact_weight_sum: 124177617
|
||||
isolated_neurons: 217
|
||||
self_loops: 101
|
||||
|
||||
device:
|
||||
required_name_substring: RTX 4090
|
||||
launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
|
||||
mixed_multi_gpu: false
|
||||
|
||||
model:
|
||||
integrator: forward_euler
|
||||
dt_ms: 0.1
|
||||
membrane_tau_ms: 20.0
|
||||
synaptic_tau_ms: 5.0
|
||||
refractory_ms: 2.2
|
||||
resting_potential_mv: -52.0
|
||||
reset_potential_mv: -52.0
|
||||
threshold_mv: -45.0
|
||||
synaptic_delay_ms: 1.8
|
||||
parameter_provenance: FlyWire-inspired 2024 LIF baseline; not MaleCNS measured single-cell parameters
|
||||
|
||||
sign_policy:
|
||||
neurotransmitter_sign:
|
||||
acetylcholine: 1
|
||||
gaba: -1
|
||||
glutamate: -1
|
||||
dopamine: 1
|
||||
octopamine: 1
|
||||
serotonin: 1
|
||||
histamine: -1
|
||||
histamine_policy_note: explicitly configured inhibitory baseline assumption; not silently inferred
|
||||
unknown_sign: 0
|
||||
unclear_sign: 0
|
||||
unmapped_policy: error
|
||||
unmapped_sign: 0
|
||||
|
||||
weights:
|
||||
transform: sqrt
|
||||
supported_transforms: [linear, sqrt, log1p]
|
||||
scale: 0.05
|
||||
chunk_edges: 2000000
|
||||
units: model synaptic-state increment per presynaptic spike
|
||||
formula: effective_weight = presynaptic_sign * scale * f(raw_synapse_count)
|
||||
preserve_raw_int64: true
|
||||
|
||||
stimulations:
|
||||
single_neuron:
|
||||
kind: single_neuron_pulse
|
||||
neuron_idx: 0
|
||||
start_ms: 2.0
|
||||
duration_ms: 1.0
|
||||
amplitude_mv_equivalent: 400.0
|
||||
known_type_AMMC005:
|
||||
kind: known_type_pulse
|
||||
type_name: AMMC005
|
||||
max_neurons: 12
|
||||
start_ms: 5.0
|
||||
duration_ms: 1.0
|
||||
amplitude_mv_equivalent: 400.0
|
||||
sparse_poisson:
|
||||
kind: sparse_poisson
|
||||
target_fraction: 0.001
|
||||
rate_hz: 20.0
|
||||
event_amplitude_mv_equivalent: 1600.0
|
||||
|
||||
smoke_tests:
|
||||
- name: smoke-10ms-single-neuron
|
||||
duration_ms: 10.0
|
||||
stimulation: single_neuron
|
||||
seed: 41001
|
||||
- name: smoke-100ms-known-type
|
||||
duration_ms: 100.0
|
||||
stimulation: known_type_AMMC005
|
||||
seed: 41002
|
||||
- name: smoke-1s-sparse-poisson
|
||||
duration_ms: 1000.0
|
||||
stimulation: sparse_poisson
|
||||
seed: 41003
|
||||
|
||||
cpu_gpu_reference:
|
||||
seed: 41100
|
||||
subgraph_neurons: 512
|
||||
steps: 100
|
||||
pulse_start_step: 5
|
||||
pulse_steps: 10
|
||||
pulse_neurons: 4
|
||||
pulse_amplitude_mv_equivalent: 400.0
|
||||
absolute_tolerance: 1.0e-10
|
||||
|
||||
validation:
|
||||
finite_check_interval_steps: 100
|
||||
explosive_step_fraction: 0.1
|
||||
memory_growth_tolerance_bytes: 10485760
|
||||
|
||||
output:
|
||||
spike_representation: event_table_timestamp_ms_neuron_idx
|
||||
dense_time_by_neuron_forbidden: true
|
||||
rate_window_ms: 10.0
|
||||
|
||||
reproducibility:
|
||||
seed: 41000
|
||||
deterministic_synthetic_inputs: true
|
||||
@@ -0,0 +1,81 @@
|
||||
{
|
||||
"checks": {
|
||||
"cpu_gpu_events_equal": true,
|
||||
"cpu_gpu_g_tolerance": true,
|
||||
"cpu_gpu_voltage_tolerance": true,
|
||||
"delay_exact_1_8_ms": true,
|
||||
"g_decays_during_refractory": true,
|
||||
"multi_synapse_high_weight_edge": true,
|
||||
"refractory_rejects_early_forced_spike": true,
|
||||
"self_loop": true,
|
||||
"single_excitatory_edge": true,
|
||||
"single_inhibitory_edge": true,
|
||||
"synchronous_presynaptic_sum": true
|
||||
},
|
||||
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|
||||
[
|
||||
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|
||||
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|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
||||
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|
||||
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|
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|
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|
||||
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|
||||
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|
||||
"passed": true,
|
||||
"refractory_g_policy": "g continues to decay and receive delayed events while v is clamped at V_reset",
|
||||
"refractory_steps": 22
|
||||
}
|
||||
@@ -0,0 +1,166 @@
|
||||
{
|
||||
"explanation": "peak minus listed persistent/state tensors is transient fan-out indexing, spike detection, Poisson, and scatter workspace; no padding copies were created",
|
||||
"full_logging_event_arrays": [
|
||||
{
|
||||
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|
||||
"device": "cpu",
|
||||
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|
||||
"name": "event_steps",
|
||||
"shape": [
|
||||
2259320
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
"peak_allocated_vram_bytes": 248174080,
|
||||
"peak_minus_listed_tensor_bytes": 26672956,
|
||||
"peak_reserved_vram_bytes": 276824064,
|
||||
"phase4a_234_7_mib_explained": true,
|
||||
"tensors_and_arrays": [
|
||||
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|
||||
"bytes": 1333608,
|
||||
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|
||||
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|
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|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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"bytes": 204663504,
|
||||
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|
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|
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|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
||||
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|
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|
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|
||||
"bytes": 166700,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"bytes": 102331752,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"bytes": 666800,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
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|
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|
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|
||||
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|
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|
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|
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
"shape": [
|
||||
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|
||||
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|
||||
}
|
||||
]
|
||||
}
|
||||
+29
@@ -0,0 +1,29 @@
|
||||
{
|
||||
"baseline_w_syn_mv": 0.275,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
"effective_weights_path": "/data/digital-drosophila/experiments/phase4b-dynamics/audit/effective-weights-0.275.float32.npy",
|
||||
"effective_weights_sha256": "c094c8bda9d571a76d80118a5295cd19bd6ce7f52809ba81b10751f7ef036cf0",
|
||||
"formula": "effective_weight(j->i) = sign(j) * raw_synapse_count(j->i) * W_syn",
|
||||
"raw_weights_path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/gpu/csr-weights.int64.npy",
|
||||
"raw_weights_read_only": true,
|
||||
"raw_weights_sha256": "c7ae101451dd19c47fd976bcfacbc52d67193a68ffa04c5b4d2e911cfd52d99b",
|
||||
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|
||||
"-1": 59262,
|
||||
"0": 3177,
|
||||
"1": 104261
|
||||
},
|
||||
"source_field": "neurotransmitter",
|
||||
"transform": "strict linear; no sqrt/log1p/normalization/degree normalization/threshold",
|
||||
"unclear_count": 2999,
|
||||
"unknown_count": 178
|
||||
}
|
||||
+3342
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
+207
@@ -0,0 +1,207 @@
|
||||
{
|
||||
"classification_thresholds_fixed_before_run": {
|
||||
"abort_supercritical": true,
|
||||
"check_interval_steps": 50,
|
||||
"propagating_min_depth": 2,
|
||||
"supercritical_active_fraction": 0.8,
|
||||
"supercritical_mean_rate_hz": 100.0,
|
||||
"supercritical_peak_step_fraction": 0.1
|
||||
},
|
||||
"controlled_population": "auditory",
|
||||
"controlled_rate_hz": 100,
|
||||
"controlled_seed": 42100,
|
||||
"regions": {
|
||||
"0.1375": "propagating",
|
||||
"0.20625": "propagating",
|
||||
"0.275": "propagating",
|
||||
"0.34375": "propagating",
|
||||
"0.55": "propagating"
|
||||
},
|
||||
"trials": [
|
||||
{
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"dynamics_region": "propagating",
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"peak_allocated_vram_bytes": 245707264,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"realtime_factor_wall_over_biological": 9.165705415000048,
|
||||
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|
||||
"second_hop_active_neurons": 88,
|
||||
"seed": 42100,
|
||||
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|
||||
"steps_per_second": 1091.0234997990003,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
{
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
}
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,116 @@
|
||||
phase: 4B
|
||||
paths:
|
||||
connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
|
||||
experiment_root: /data/digital-drosophila/experiments/phase4b-dynamics
|
||||
|
||||
expected_graph:
|
||||
neurons: 166700
|
||||
directed_edges: 25582938
|
||||
synaptic_contact_weight_sum: 124177617
|
||||
isolated_neurons: 217
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||||
self_loops: 101
|
||||
|
||||
device:
|
||||
required_name_substring: RTX 4090
|
||||
launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
|
||||
mixed_multi_gpu: false
|
||||
|
||||
model:
|
||||
dt_ms: 0.1
|
||||
membrane_tau_ms: 20.0
|
||||
synaptic_tau_ms: 5.0
|
||||
refractory_ms: 2.2
|
||||
resting_potential_mv: -52.0
|
||||
reset_potential_mv: -52.0
|
||||
threshold_mv: -45.0
|
||||
synaptic_delay_ms: 1.8
|
||||
w_syn_mv_per_anatomical_synapse: 0.275
|
||||
integration: forward_euler
|
||||
refractory_g_policy: g continues to decay and receive delayed events while v is clamped at V_reset
|
||||
provenance: Shiu-2024-compatible baseline supplied by user; not MaleCNS measured single-cell parameters
|
||||
|
||||
sign_policy:
|
||||
neurotransmitter_sign:
|
||||
acetylcholine: 1
|
||||
gaba: -1
|
||||
glutamate: -1
|
||||
histamine: -1
|
||||
dopamine: 1
|
||||
octopamine: 1
|
||||
serotonin: 1
|
||||
unknown_sign: 0
|
||||
unclear_sign: 0
|
||||
unmapped_policy: error
|
||||
|
||||
sensory_populations:
|
||||
visual:
|
||||
expression: annotation_class == 'visual'
|
||||
mechanosensory:
|
||||
expression: annotation_class in {'mechanosensory','mechanosensory_tactile','mechanosensory_proprioceptive'} and annotation_subclass != 'auditory'
|
||||
olfactory:
|
||||
expression: annotation_class == 'olfactory'
|
||||
gustatory:
|
||||
expression: annotation_class == 'gustatory'
|
||||
auditory:
|
||||
expression: annotation_subclass == 'auditory'
|
||||
|
||||
baseline_sweep:
|
||||
rates_hz: [10, 25, 50, 100, 150, 200]
|
||||
seeds: [42001, 42002, 42003]
|
||||
duration_ms: 1000.0
|
||||
event_logging: false
|
||||
|
||||
weight_sweep:
|
||||
population: auditory
|
||||
rate_hz: 100
|
||||
seed: 42100
|
||||
duration_ms: 1000.0
|
||||
values_mv: [0.1375, 0.20625, 0.275, 0.34375, 0.55]
|
||||
|
||||
stimulation:
|
||||
mode: refractory-respecting forced sensory-neuron Poisson spikes
|
||||
note: no arbitrary current amplitude is introduced; accepted events become presynaptic spikes
|
||||
|
||||
classification:
|
||||
supercritical_peak_step_fraction: 0.10
|
||||
supercritical_active_fraction: 0.80
|
||||
supercritical_mean_rate_hz: 100.0
|
||||
propagating_min_depth: 2
|
||||
abort_supercritical: true
|
||||
check_interval_steps: 50
|
||||
|
||||
performance:
|
||||
population: auditory
|
||||
rate_hz: 10
|
||||
seed: 42200
|
||||
duration_ms: 1000.0
|
||||
gpu_sample_interval_seconds: 0.2
|
||||
compare_logging_disabled_and_full: true
|
||||
|
||||
profiler:
|
||||
population: auditory
|
||||
rate_hz: 10
|
||||
seed: 42201
|
||||
duration_ms: 1000.0
|
||||
synchronized_category_timing: true
|
||||
|
||||
causal_validation:
|
||||
requested_chains: 100
|
||||
requested_inhibitory_transmissions: 100
|
||||
seed: 42300
|
||||
max_edges_examined: 5000000
|
||||
|
||||
cpu_gpu_reference:
|
||||
seed: 42400
|
||||
subgraph_neurons: 512
|
||||
steps: 100
|
||||
absolute_tolerance: 1.0e-10
|
||||
|
||||
audit:
|
||||
finite_check_interval_steps: 100
|
||||
memory_growth_tolerance_bytes: 10485760
|
||||
preserve_source_data: true
|
||||
|
||||
reproducibility:
|
||||
global_seed: 42000
|
||||
deterministic_inputs: true
|
||||
@@ -0,0 +1,696 @@
|
||||
{
|
||||
"code": {
|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
"path": "/data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only/gpu/csr-metadata.json",
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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|
||||
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||||
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||||
reproducibility:
|
||||
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|
||||
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||||
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||||
source_phase: Phase 4B PASS
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||||
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||||
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||||
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||||
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||||
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+33
@@ -0,0 +1,33 @@
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+33
@@ -0,0 +1,33 @@
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+33
@@ -0,0 +1,33 @@
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+33
@@ -0,0 +1,33 @@
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+33
@@ -0,0 +1,33 @@
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"backend": "eager",
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||||
"baseline_status": "semantic test; no automatic selection",
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||||
"biological_interpretation": "histamine remains inhibitory; forced sensory spikes are an engineering interface, not phototransduction/receptor-potential biology",
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
"baseline_status": "semantic test; no automatic selection",
|
||||
"biological_interpretation": "histamine remains inhibitory; forced sensory spikes are an engineering interface, not phototransduction/receptor-potential biology",
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||||
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||||
"interpretation": "engineering external input at hierarchy layer visual_sensory",
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
}
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||||
}
|
||||
@@ -0,0 +1,96 @@
|
||||
{
|
||||
"all_histaminergic": true,
|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
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|
||||
"named_optic_regions": "explicit annotation_type prefix/set rules, preserved in this audit; no body_id was guessed",
|
||||
"optic_lobe_interneurons": "annotation_superclass=ol_intrinsic",
|
||||
"photoreceptor_retinal_sensory": "annotation_class=visual AND annotation_superclass=ol_sensory; observed types recorded verbatim",
|
||||
"visual_projection_neurons": "annotation_superclass in {visual_projection, visual_projection_tbc}"
|
||||
},
|
||||
"conclusion": "The 6091 annotation_class=visual bodies are photoreceptor/retinal sensory input neurons, not the whole visual processing network.",
|
||||
"edge_statistics_file": "/data/digital-drosophila/experiments/phase4c-runtime/visual-audit/hierarchy-edge-statistics.json",
|
||||
"field_breakdown": {
|
||||
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|
||||
"visual": 6091
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
}
|
||||
},
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
"hierarchy_definition": "exclusive shortest directed connectome distance from the 6091 sensory neurons: depth 0 sensory, depth 1 first-order, depth 2 second-order, depth >=3 split into optic/visual-superclass higher_visual versus non-optic downstream central_brain; unreachable bodies are excluded",
|
||||
"phase4b_visual_count": 6091,
|
||||
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|
||||
"R1-R6",
|
||||
"R7R8_unclear",
|
||||
"R7_unclear",
|
||||
"R7d",
|
||||
"R7p",
|
||||
"R7y",
|
||||
"R8_unclear",
|
||||
"R8d",
|
||||
"R8p",
|
||||
"R8y"
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,54 @@
|
||||
{
|
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||||
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@@ -0,0 +1,767 @@
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|
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
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|
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|
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|
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|
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||||
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|
||||
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|
||||
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|
||||
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|
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|
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|
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||||
"max_theoretical_control_hz_mean": 14.563514446103117,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.0686650035004277
|
||||
},
|
||||
"100": {
|
||||
"descending_active_mean": 7.0,
|
||||
"feature_l2_norm_mean": 3.2850422859191895,
|
||||
"max_theoretical_control_hz_mean": 1.433217037737884,
|
||||
"motor_active_mean": 1.0,
|
||||
"wall_latency_seconds_mean": 0.6977478650005651
|
||||
},
|
||||
"20": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 7.200980436100115,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.1388721484981943
|
||||
},
|
||||
"30": {
|
||||
"descending_active_mean": 0.5,
|
||||
"feature_l2_norm_mean": 0.5,
|
||||
"max_theoretical_control_hz_mean": 4.74701108702169,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.21070625800166454
|
||||
},
|
||||
"5": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 27.640342623983457,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.03618956549871655
|
||||
},
|
||||
"50": {
|
||||
"descending_active_mean": 0.5,
|
||||
"feature_l2_norm_mean": 0.5,
|
||||
"max_theoretical_control_hz_mean": 2.871035953527425,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.348377544001778
|
||||
}
|
||||
},
|
||||
"engineering-first-order": {
|
||||
"10": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 12.632115552627495,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.07916375949935173
|
||||
},
|
||||
"100": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 1.2677171989530998,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.7888262000014947
|
||||
},
|
||||
"20": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 6.323881804907234,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.15813258749949455
|
||||
},
|
||||
"30": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 4.2377977662726956,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.2359717155013641
|
||||
},
|
||||
"5": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 24.938894763312497,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.040101544500430464
|
||||
},
|
||||
"50": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 2.5383035152588214,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.393966386500324
|
||||
}
|
||||
},
|
||||
"engineering-second-order": {
|
||||
"10": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 12.596251819534128,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.07939190000070084
|
||||
},
|
||||
"100": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 1.2544771366831613,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.7971448889984458
|
||||
},
|
||||
"20": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 6.328606497314265,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.15801490349986125
|
||||
},
|
||||
"30": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 4.206315755502937,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.23773801350034773
|
||||
},
|
||||
"5": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 25.21541866423997,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.03966131749984925
|
||||
},
|
||||
"50": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 2.5088201910068992,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.39859462449931016
|
||||
}
|
||||
},
|
||||
"olfactory": {
|
||||
"10": {
|
||||
"descending_active_mean": 3.0,
|
||||
"feature_l2_norm_mean": 2.0299823880195618,
|
||||
"max_theoretical_control_hz_mean": 9.543257681672912,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.10478995249832224
|
||||
},
|
||||
"100": {
|
||||
"descending_active_mean": 382.5,
|
||||
"feature_l2_norm_mean": 256.3955078125,
|
||||
"max_theoretical_control_hz_mean": 0.9298083020851977,
|
||||
"motor_active_mean": 276.0,
|
||||
"wall_latency_seconds_mean": 1.0754995434999728
|
||||
},
|
||||
"20": {
|
||||
"descending_active_mean": 133.5,
|
||||
"feature_l2_norm_mean": 21.894246101379395,
|
||||
"max_theoretical_control_hz_mean": 4.765933839132918,
|
||||
"motor_active_mean": 33.5,
|
||||
"wall_latency_seconds_mean": 0.20982260950040654
|
||||
},
|
||||
"30": {
|
||||
"descending_active_mean": 254.0,
|
||||
"feature_l2_norm_mean": 51.6346378326416,
|
||||
"max_theoretical_control_hz_mean": 3.1428793411590856,
|
||||
"motor_active_mean": 160.0,
|
||||
"wall_latency_seconds_mean": 0.31817962849891046
|
||||
},
|
||||
"5": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 18.877259454812403,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.052979169000536785
|
||||
},
|
||||
"50": {
|
||||
"descending_active_mean": 335.0,
|
||||
"feature_l2_norm_mean": 108.56311798095703,
|
||||
"max_theoretical_control_hz_mean": 1.867659673856369,
|
||||
"motor_active_mean": 208.5,
|
||||
"wall_latency_seconds_mean": 0.5354398985000444
|
||||
}
|
||||
},
|
||||
"shortest_engineering_descending_signal_ms": null,
|
||||
"shortest_engineering_motor_signal_ms": null,
|
||||
"trial_count": 48
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,91 @@
|
||||
{
|
||||
"$schema": "https://json-schema.org/draft/2020-12/schema",
|
||||
"external_drive_is_connectome_transmission": false,
|
||||
"properties": {
|
||||
"batch_id": {
|
||||
"type": "string"
|
||||
},
|
||||
"events": {
|
||||
"items": {
|
||||
"properties": {
|
||||
"amplitude_mv": {
|
||||
"type": "number"
|
||||
},
|
||||
"channel_id": {
|
||||
"type": "string"
|
||||
},
|
||||
"duration_ms": {
|
||||
"exclusiveMinimum": 0,
|
||||
"type": "number"
|
||||
},
|
||||
"source_id": {
|
||||
"type": "string"
|
||||
},
|
||||
"start_ms": {
|
||||
"minimum": 0,
|
||||
"type": "number"
|
||||
},
|
||||
"stimulation_mode": {
|
||||
"enum": [
|
||||
"spike_injection",
|
||||
"external_synaptic_drive"
|
||||
]
|
||||
},
|
||||
"target_neuron_idx": {
|
||||
"items": {
|
||||
"maximum": 166699,
|
||||
"minimum": 0,
|
||||
"type": "integer"
|
||||
},
|
||||
"type": "array"
|
||||
},
|
||||
"value": {
|
||||
"oneOf": [
|
||||
{
|
||||
"type": "number"
|
||||
},
|
||||
{
|
||||
"items": {
|
||||
"type": "number"
|
||||
},
|
||||
"type": "array"
|
||||
}
|
||||
]
|
||||
},
|
||||
"value_kind": {
|
||||
"enum": [
|
||||
"binary",
|
||||
"scalar_intensity",
|
||||
"poisson_rate_hz",
|
||||
"signed_modulation"
|
||||
]
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"target_neuron_idx",
|
||||
"stimulation_mode",
|
||||
"value_kind",
|
||||
"value",
|
||||
"start_ms",
|
||||
"duration_ms",
|
||||
"source_id",
|
||||
"channel_id"
|
||||
],
|
||||
"type": "object"
|
||||
},
|
||||
"type": "array"
|
||||
},
|
||||
"version": {
|
||||
"const": "1.0.0"
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"version",
|
||||
"batch_id",
|
||||
"events"
|
||||
],
|
||||
"timestamp_unit": "biological ms",
|
||||
"title": "MaleCNS InputBatch",
|
||||
"type": "object",
|
||||
"version": "1.0.0"
|
||||
}
|
||||
@@ -0,0 +1,102 @@
|
||||
phase: 4D
|
||||
names:
|
||||
runtime: MaleCNS-LIF-runtime-v1
|
||||
io_api: MaleCNS-BrainIO-v1
|
||||
visual_adapter: MaleCNS-VisualAdapter-v1
|
||||
activity_stream: MaleCNS-ActivityStream-v1
|
||||
|
||||
paths:
|
||||
connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
|
||||
model_root: /data/digital-drosophila/models/male-cns-lif
|
||||
runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
|
||||
phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
|
||||
experiment_root: /data/digital-drosophila/experiments/phase4d-io
|
||||
|
||||
device:
|
||||
required_name_substring: RTX 4090
|
||||
launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
|
||||
|
||||
model:
|
||||
dt_ms: 0.1
|
||||
membrane_tau_ms: 20.0
|
||||
synaptic_tau_ms: 5.0
|
||||
refractory_ms: 2.2
|
||||
resting_potential_mv: -52.0
|
||||
reset_potential_mv: -52.0
|
||||
threshold_mv: -45.0
|
||||
synaptic_delay_ms: 1.8
|
||||
w_syn_mv_per_anatomical_synapse: 0.275
|
||||
|
||||
sign_policy:
|
||||
neurotransmitter_sign:
|
||||
acetylcholine: 1
|
||||
gaba: -1
|
||||
glutamate: -1
|
||||
histamine: -1
|
||||
dopamine: 1
|
||||
octopamine: 1
|
||||
serotonin: 1
|
||||
unknown_sign: 0
|
||||
unclear_sign: 0
|
||||
|
||||
input_batch:
|
||||
version: 1.0.0
|
||||
allowed_modes: [spike_injection, external_synaptic_drive]
|
||||
refractory_respecting_spike_injection: true
|
||||
external_drive_application: add to g after decay and delayed-connectome arrival, before membrane integration
|
||||
|
||||
visual_adapter:
|
||||
version: 1.0.0
|
||||
modes:
|
||||
reference-photoreceptor:
|
||||
hierarchy_population: visual_sensory
|
||||
input_mode: spike_injection
|
||||
biological_fidelity: reference_comparison_only
|
||||
engineering-first-order:
|
||||
hierarchy_population: first_order
|
||||
input_mode: external_synaptic_drive
|
||||
biological_fidelity: engineering_adapter
|
||||
engineering-second-order:
|
||||
hierarchy_population: second_order
|
||||
input_mode: external_synaptic_drive
|
||||
biological_fidelity: engineering_adapter
|
||||
synthetic_rate_hz: 50.0
|
||||
external_drive_mv: 8.0
|
||||
|
||||
readout:
|
||||
bins_ms: [1, 5, 10, 20, 50]
|
||||
output_populations: [descending, motor_related, ascending]
|
||||
|
||||
window_experiment:
|
||||
windows_ms: [5, 10, 20, 30, 50, 100]
|
||||
sources: [engineering-first-order, engineering-second-order, auditory, olfactory]
|
||||
seeds: [44001, 44002]
|
||||
|
||||
continuous_control:
|
||||
biological_duration_ms: 1000.0
|
||||
periods_ms: [10, 20, 50, 100]
|
||||
sequence: [sparse-A, sparse-B, dense, zero, sparse-A]
|
||||
seed: 44100
|
||||
|
||||
synthetic_patterns:
|
||||
sparse_fraction: 0.05
|
||||
dense_fraction: 0.25
|
||||
moving_fraction: 0.05
|
||||
deterministic_seed: 44200
|
||||
|
||||
regression:
|
||||
float_absolute_tolerance: 0.00390625
|
||||
reference_trials:
|
||||
- {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
|
||||
- {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
|
||||
- {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
|
||||
- {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
|
||||
- {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
|
||||
|
||||
prohibitions:
|
||||
stable_retro: false
|
||||
rom_access: false
|
||||
controller_buttons: false
|
||||
training: false
|
||||
web_server: false
|
||||
connectome_or_sign_changes: false
|
||||
@@ -0,0 +1,54 @@
|
||||
{
|
||||
"10": {
|
||||
"biological_ms": 1000.0,
|
||||
"continuous_state_without_reset": true,
|
||||
"interval_count": 100,
|
||||
"max_response_latency_ms": null,
|
||||
"median_response_latency_ms": null,
|
||||
"period_ms": 10.0,
|
||||
"wall_seconds": 7.416322276021674,
|
||||
"zero_input_adapter_target_spikes": 3,
|
||||
"zero_input_descending_spikes": 0,
|
||||
"zero_input_intervals_with_activity": 0,
|
||||
"zero_input_motor_spikes": 0
|
||||
},
|
||||
"100": {
|
||||
"biological_ms": 1000.0,
|
||||
"continuous_state_without_reset": true,
|
||||
"interval_count": 10,
|
||||
"max_response_latency_ms": null,
|
||||
"median_response_latency_ms": null,
|
||||
"period_ms": 100.0,
|
||||
"wall_seconds": 7.422180687994114,
|
||||
"zero_input_adapter_target_spikes": 2,
|
||||
"zero_input_descending_spikes": 0,
|
||||
"zero_input_intervals_with_activity": 0,
|
||||
"zero_input_motor_spikes": 0
|
||||
},
|
||||
"20": {
|
||||
"biological_ms": 1000.0,
|
||||
"continuous_state_without_reset": true,
|
||||
"interval_count": 50,
|
||||
"max_response_latency_ms": null,
|
||||
"median_response_latency_ms": null,
|
||||
"period_ms": 20.0,
|
||||
"wall_seconds": 7.3941729520010995,
|
||||
"zero_input_adapter_target_spikes": 8,
|
||||
"zero_input_descending_spikes": 0,
|
||||
"zero_input_intervals_with_activity": 0,
|
||||
"zero_input_motor_spikes": 0
|
||||
},
|
||||
"50": {
|
||||
"biological_ms": 1000.0,
|
||||
"continuous_state_without_reset": true,
|
||||
"interval_count": 20,
|
||||
"max_response_latency_ms": null,
|
||||
"median_response_latency_ms": null,
|
||||
"period_ms": 50.0,
|
||||
"wall_seconds": 7.396266924995871,
|
||||
"zero_input_adapter_target_spikes": 8,
|
||||
"zero_input_descending_spikes": 0,
|
||||
"zero_input_intervals_with_activity": 0,
|
||||
"zero_input_motor_spikes": 0
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,182 @@
|
||||
{
|
||||
"all_repeat_deterministic": true,
|
||||
"auditory": {
|
||||
"10": {
|
||||
"descending_active_mean": 0.0,
|
||||
"feature_l2_norm_mean": 0.0,
|
||||
"max_theoretical_control_hz_mean": 14.563514446103117,
|
||||
"motor_active_mean": 0.0,
|
||||
"wall_latency_seconds_mean": 0.0686650035004277
|
||||
},
|
||||
"100": {
|
||||
"descending_active_mean": 7.0,
|
||||
"feature_l2_norm_mean": 3.2850422859191895,
|
||||
"max_theoretical_control_hz_mean": 1.433217037737884,
|
||||
"motor_active_mean": 1.0,
|
||||
"wall_latency_seconds_mean": 0.6977478650005651
|
||||
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File diff suppressed because it is too large
Load Diff
+42
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||||
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||||
"amplitude_multiple_w_syn": 29.09090909090909,
|
||||
"amplitude_mv": 8.0,
|
||||
"descending_active": 0,
|
||||
"descending_first_spike_latency_ms": null,
|
||||
"descending_spikes": 0,
|
||||
"external_drive_events": 1147,
|
||||
"layer": "engineering-higher-visual",
|
||||
"mean_firing_rate_hz": 0.00017996400719856028,
|
||||
"motor_active": 0,
|
||||
"motor_first_spike_latency_ms": null,
|
||||
"motor_spikes": 0,
|
||||
"multi_hop_output_propagation": false,
|
||||
"non_target_active": 0,
|
||||
"numerically_finite": true,
|
||||
"output_first_spike_latency_ms": null,
|
||||
"peak_step_fraction": 5.99880023995201e-06,
|
||||
"propagation_depth_from_full_layer": 0,
|
||||
"rate_hz": 50.0,
|
||||
"requested_biological_ms": 100.0,
|
||||
"seed": 45003,
|
||||
"simulated_biological_ms": 100.0,
|
||||
"sparsity_percent": 5.0,
|
||||
"sweep": "five-layer-comparison",
|
||||
"target_active": 3,
|
||||
"target_count": 220,
|
||||
"total_spikes": 3,
|
||||
"wall_seconds": 0.7417296190069465
|
||||
},
|
||||
{
|
||||
"aborted_runaway": false,
|
||||
"active_fraction": 1.799640071985603e-05,
|
||||
"active_neurons": 3,
|
||||
"amplitude_multiple_w_syn": 29.09090909090909,
|
||||
"amplitude_mv": 8.0,
|
||||
"descending_active": 0,
|
||||
"descending_first_spike_latency_ms": null,
|
||||
"descending_spikes": 0,
|
||||
"external_drive_events": 2246,
|
||||
"layer": "engineering-visual-projection",
|
||||
"mean_firing_rate_hz": 0.00017996400719856028,
|
||||
"motor_active": 0,
|
||||
"motor_first_spike_latency_ms": null,
|
||||
"motor_spikes": 0,
|
||||
"multi_hop_output_propagation": false,
|
||||
"non_target_active": 0,
|
||||
"numerically_finite": true,
|
||||
"output_first_spike_latency_ms": null,
|
||||
"peak_step_fraction": 5.99880023995201e-06,
|
||||
"propagation_depth_from_full_layer": 0,
|
||||
"rate_hz": 50.0,
|
||||
"requested_biological_ms": 100.0,
|
||||
"seed": 45004,
|
||||
"simulated_biological_ms": 100.0,
|
||||
"sparsity_percent": 5.0,
|
||||
"sweep": "five-layer-comparison",
|
||||
"target_active": 3,
|
||||
"target_count": 460,
|
||||
"total_spikes": 3,
|
||||
"wall_seconds": 0.7689941450007609
|
||||
}
|
||||
],
|
||||
"phase4d_external_drive_multiple_w_syn": 29.09090909090909,
|
||||
"phase4d_external_drive_mv": 8.0,
|
||||
"trial_count": 61,
|
||||
"viable_condition_by_layer": {
|
||||
"engineering-visual-projection": {
|
||||
"aborted_runaway": false,
|
||||
"active_fraction": 0.008014397120575886,
|
||||
"active_neurons": 1336,
|
||||
"amplitude_multiple_w_syn": 32.0,
|
||||
"amplitude_mv": 8.8,
|
||||
"descending_active": 142,
|
||||
"descending_first_spike_latency_ms": 87.9,
|
||||
"descending_spikes": 248,
|
||||
"external_drive_events": 2334,
|
||||
"layer": "engineering-visual-projection",
|
||||
"mean_firing_rate_hz": 0.11271745650869826,
|
||||
"motor_active": 93,
|
||||
"motor_first_spike_latency_ms": 93.30000000000001,
|
||||
"motor_spikes": 121,
|
||||
"multi_hop_output_propagation": true,
|
||||
"non_target_active": 1324,
|
||||
"numerically_finite": true,
|
||||
"output_first_spike_latency_ms": 87.9,
|
||||
"peak_step_fraction": 0.0003299340131973605,
|
||||
"propagation_depth_from_full_layer": 2,
|
||||
"rate_hz": 50.0,
|
||||
"requested_biological_ms": 100.0,
|
||||
"seed": 60758,
|
||||
"simulated_biological_ms": 100.0,
|
||||
"sparsity_percent": 5.0,
|
||||
"sweep": "amplitude-extended",
|
||||
"target_active": 12,
|
||||
"target_count": 460,
|
||||
"total_spikes": 1879,
|
||||
"wall_seconds": 0.8299968829960562
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,115 @@
|
||||
phase: 4E
|
||||
names:
|
||||
reference: MaleCNS-LIF-reference-v1
|
||||
runtime: MaleCNS-LIF-runtime-v1
|
||||
io_api: MaleCNS-BrainIO-v1
|
||||
candidate: MaleCNS-VisualAdapter-v2-candidate
|
||||
|
||||
paths:
|
||||
connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
|
||||
model_root: /data/digital-drosophila/models/male-cns-lif
|
||||
reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
|
||||
runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
|
||||
io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
|
||||
phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
|
||||
phase4d_root: /data/digital-drosophila/experiments/phase4d-io
|
||||
experiment_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
|
||||
candidate_root: /data/digital-drosophila/models/male-cns-lif/visual-interface-v2
|
||||
|
||||
device:
|
||||
required_name_substring: RTX 4090
|
||||
launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
|
||||
|
||||
model:
|
||||
dt_ms: 0.1
|
||||
membrane_tau_ms: 20.0
|
||||
synaptic_tau_ms: 5.0
|
||||
refractory_ms: 2.2
|
||||
resting_potential_mv: -52.0
|
||||
reset_potential_mv: -52.0
|
||||
threshold_mv: -45.0
|
||||
synaptic_delay_ms: 1.8
|
||||
w_syn_mv_per_anatomical_synapse: 0.275
|
||||
|
||||
sign_policy:
|
||||
neurotransmitter_sign:
|
||||
acetylcholine: 1
|
||||
gaba: -1
|
||||
glutamate: -1
|
||||
histamine: -1
|
||||
dopamine: 1
|
||||
octopamine: 1
|
||||
serotonin: 1
|
||||
unknown_sign: 0
|
||||
unclear_sign: 0
|
||||
|
||||
visual_populations:
|
||||
reference-photoreceptor: {source: hierarchy, value: visual_sensory, interface_kind: biological-reference, stimulation_mode: spike_injection}
|
||||
engineering-first-order: {source: hierarchy, value: first_order, interface_kind: engineering, stimulation_mode: external_synaptic_drive}
|
||||
engineering-second-order: {source: hierarchy, value: second_order, interface_kind: engineering, stimulation_mode: external_synaptic_drive}
|
||||
engineering-higher-visual: {source: hierarchy, value: higher_visual, interface_kind: engineering, stimulation_mode: external_synaptic_drive}
|
||||
engineering-visual-projection: {source: metadata-expression, field: annotation_superclass, values: [visual_projection, visual_projection_tbc], interface_kind: engineering, stimulation_mode: external_synaptic_drive}
|
||||
|
||||
calibration:
|
||||
seed: 45000
|
||||
trial_duration_ms: 100.0
|
||||
chunk_ms: 10.0
|
||||
fixed_rate_hz: 50.0
|
||||
fixed_sparsity_percent: 5.0
|
||||
amplitude_multiples: [0.25, 0.5, 1, 2, 4, 8, 16]
|
||||
extended_amplitude_multiples: [32, 64]
|
||||
rate_hz: [10, 25, 50, 100, 150, 200]
|
||||
sparsity_percent: [0.1, 0.5, 1, 5, 10, 25, 50, 100]
|
||||
latency_windows_ms: [5, 10, 20, 30, 50, 100, 200]
|
||||
deterministic_repeats: 2
|
||||
runaway:
|
||||
active_fraction_gte: 0.80
|
||||
mean_firing_rate_hz_gte: 100.0
|
||||
peak_step_fraction_gte: 0.10
|
||||
propagation_success:
|
||||
require_output_active: true
|
||||
require_non_target_active: true
|
||||
minimum_graph_hops: 2
|
||||
|
||||
patterns:
|
||||
# Separability uses the selected propagating condition's sparsity. This is
|
||||
# retained only as a fallback if that condition has no sparsity field.
|
||||
sparse_percent: 5.0
|
||||
dense_percent: 25.0
|
||||
moving_segments: 5
|
||||
trial_duration_ms: 100.0
|
||||
seeds: [45101, 45102, 45103]
|
||||
|
||||
continuous:
|
||||
biological_duration_ms: 1000.0
|
||||
periods_ms: [10, 20, 50, 100]
|
||||
sequence: [sparse-A, sparse-B, sparse-A, moving, zero, dense]
|
||||
seed: 45200
|
||||
|
||||
readout:
|
||||
bins_ms: [1, 5, 10, 20, 50]
|
||||
|
||||
regression:
|
||||
float_absolute_tolerance: 0.00390625
|
||||
reference_trials:
|
||||
- {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
|
||||
- {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
|
||||
- {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
|
||||
- {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
|
||||
- {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
|
||||
|
||||
candidate_selection:
|
||||
rule: "gateway iff multi-hop propagation reaches descending or motor output and is non-runaway; rank by lowest amplitude multiple, then lowest min output hops, then hierarchy order. Formal adapter-v2 eligibility additionally requires deterministic nonzero output separability and matched-input-count validation"
|
||||
hierarchy_order: [engineering-first-order, engineering-second-order, engineering-higher-visual, engineering-visual-projection]
|
||||
|
||||
prohibitions:
|
||||
connectome_changes: false
|
||||
raw_weight_changes: false
|
||||
lif_semantics_changes: false
|
||||
transmitter_sign_changes: false
|
||||
training: false
|
||||
reinforcement_learning: false
|
||||
game_integration: false
|
||||
web_server: false
|
||||
three_d_frontend: false
|
||||
phase4f: false
|
||||
+2198
File diff suppressed because it is too large
Load Diff
+42
@@ -0,0 +1,42 @@
|
||||
{
|
||||
"adapter_v2_eligible": false,
|
||||
"adapter_v2_gate_note": "gateway selection uses anatomy/path/propagation; formal adapter eligibility additionally requires deterministic separability",
|
||||
"condition": {
|
||||
"aborted_runaway": false,
|
||||
"active_fraction": 0.008014397120575886,
|
||||
"active_neurons": 1336,
|
||||
"amplitude_multiple_w_syn": 32.0,
|
||||
"amplitude_mv": 8.8,
|
||||
"descending_active": 142,
|
||||
"descending_first_spike_latency_ms": 87.9,
|
||||
"descending_spikes": 248,
|
||||
"external_drive_events": 2334,
|
||||
"layer": "engineering-visual-projection",
|
||||
"mean_firing_rate_hz": 0.11271745650869826,
|
||||
"motor_active": 93,
|
||||
"motor_first_spike_latency_ms": 93.30000000000001,
|
||||
"motor_spikes": 121,
|
||||
"multi_hop_output_propagation": true,
|
||||
"non_target_active": 1324,
|
||||
"numerically_finite": true,
|
||||
"output_first_spike_latency_ms": 87.9,
|
||||
"peak_step_fraction": 0.0003299340131973605,
|
||||
"propagation_depth_from_full_layer": 2,
|
||||
"rate_hz": 50.0,
|
||||
"requested_biological_ms": 100.0,
|
||||
"seed": 60758,
|
||||
"simulated_biological_ms": 100.0,
|
||||
"sparsity_percent": 5.0,
|
||||
"sweep": "amplitude-extended",
|
||||
"target_active": 12,
|
||||
"target_count": 460,
|
||||
"total_spikes": 1879,
|
||||
"wall_seconds": 0.8299968829960562
|
||||
},
|
||||
"handpicked": false,
|
||||
"layer": "engineering-visual-projection",
|
||||
"minimum_output_hops": 1,
|
||||
"name": "visual_gateway_candidate",
|
||||
"rule": "gateway iff multi-hop propagation reaches descending or motor output and is non-runaway; rank by lowest amplitude multiple, then lowest min output hops, then hierarchy order. Formal adapter-v2 eligibility additionally requires deterministic nonzero output separability and matched-input-count validation",
|
||||
"selected": true
|
||||
}
|
||||
+883
@@ -0,0 +1,883 @@
|
||||
{
|
||||
"code": [
|
||||
{
|
||||
"path": "/data/digital-drosophila/models/male-cns-lif/visual-interface-v2/phase4e.py",
|
||||
"sha256": "a56fead8424e4e79be370dade0a86fec10438348968819481960b0b693411f73"
|
||||
},
|
||||
{
|
||||
"path": "/data/digital-drosophila/models/male-cns-lif/visual-interface-v2/phase4e.yaml",
|
||||
"sha256": "708b6bb75b82a967f8c1e65cce646f080a79f7b6048ca72e61de1dc184d9923a"
|
||||
}
|
||||
],
|
||||
"created_unix_time": 1789851581.1730437,
|
||||
"immutable_inputs": [
|
||||
{
|
||||
"path": "/data/digital-drosophila/models/male-cns-lif/reference-v1/checksums.sha256",
|
||||
"sha256": "bc49d61cc861fdcd2fb909bafdbb463376a1395877749c49a76855715256415e"
|
||||
},
|
||||
{
|
||||
"path": "/data/digital-drosophila/models/male-cns-lif/runtime-v1/checksums.sha256",
|
||||
"sha256": "c1230b3cd327323c7df8483ac1b6130defc84d03340372d37cd684fbaa03fb65"
|
||||
},
|
||||
{
|
||||
"path": "/data/digital-drosophila/models/male-cns-lif/io-v1/checksums.sha256",
|
||||
"sha256": "dd1f578447d445019598e78bd23a27a71b72a3470680d3a956aac6bf1efe26fe"
|
||||
},
|
||||
{
|
||||
"path": "/data/digital-drosophila/experiments/phase4c-runtime/manifests/checksums.sha256",
|
||||
"sha256": "ae60ab740804c1d5489139c9de2b65b06475d965ac001eecee7ba4d42ef42ba6"
|
||||
},
|
||||
{
|
||||
"path": "/data/digital-drosophila/experiments/phase4d-io/manifests/checksums.sha256",
|
||||
"sha256": "27fd9456b7f2e0c87dfd0f1725e48e11d836fbd4821623581e5f1cf8bd75da38"
|
||||
}
|
||||
],
|
||||
"outputs": [
|
||||
{
|
||||
"bytes": 1096,
|
||||
"path": "/data/digital-drosophila/experiments/phase4e-visual-calibration/activity-stream/activity-packet.schema.json",
|
||||
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|
||||
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|
||||
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|
||||
"bytes": 221,
|
||||
"path": "/data/digital-drosophila/experiments/phase4e-visual-calibration/activity-stream/replay-test.json",
|
||||
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|
||||
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|
||||
{
|
||||
"bytes": 881,
|
||||
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|
||||
"sha256": "e0d9ee849048a92d1c0a31fa37f167d126c926def6b7114633224999804a7e82"
|
||||
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|
||||
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|
||||
"bytes": 897,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"bytes": 895,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"bytes": 892,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"bytes": 894,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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|
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|
||||
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|
||||
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|
||||
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|
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|
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|
||||
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|
||||
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|
||||
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|
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|
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|
||||
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|
||||
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||||
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|
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|
||||
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|
||||
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|
||||
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|
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|
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+12
@@ -0,0 +1,12 @@
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@@ -0,0 +1,12 @@
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@@ -0,0 +1,12 @@
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@@ -0,0 +1,12 @@
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@@ -0,0 +1,398 @@
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|
||||
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|
||||
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||||
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|
||||
{
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||||
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||||
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||||
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|
||||
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|
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|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
{
|
||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
"non_target_active": 0,
|
||||
"numerically_finite": true,
|
||||
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|
||||
"pattern": "moving",
|
||||
"peak_step_fraction": 5.99880023995201e-06,
|
||||
"propagation_depth_from_full_layer": 0,
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
{
|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"target_count": 2300,
|
||||
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|
||||
"wall_seconds": 0.7716315110083087
|
||||
},
|
||||
{
|
||||
"aborted_runaway": false,
|
||||
"active_fraction": 5.99880023995201e-06,
|
||||
"active_neurons": 1,
|
||||
"descending_active": 0,
|
||||
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|
||||
"descending_spikes": 0,
|
||||
"external_drive_events": 2296,
|
||||
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|
||||
"motor_active": 0,
|
||||
"motor_first_spike_latency_ms": null,
|
||||
"motor_spikes": 0,
|
||||
"multi_hop_output_propagation": false,
|
||||
"non_target_active": 0,
|
||||
"numerically_finite": true,
|
||||
"output_first_spike_latency_ms": null,
|
||||
"pattern": "moving",
|
||||
"peak_step_fraction": 5.99880023995201e-06,
|
||||
"propagation_depth_from_full_layer": 0,
|
||||
"requested_biological_ms": 100.0,
|
||||
"seed": 45103,
|
||||
"simulated_biological_ms": 100.0,
|
||||
"target_active": 1,
|
||||
"target_count": 2300,
|
||||
"total_spikes": 1,
|
||||
"wall_seconds": 0.769372779999685
|
||||
}
|
||||
]
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,54 @@
|
||||
{
|
||||
"all_passed": true,
|
||||
"checkpoint_restore_spikes_exact": true,
|
||||
"checkpoint_restore_voltage_exact": true,
|
||||
"continuous_step_does_not_reset_clock": true,
|
||||
"fixed_temporal_bins_tested": {
|
||||
"1": [
|
||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
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||||
0,
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||||
0,
|
||||
0,
|
||||
0,
|
||||
0,
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||||
0,
|
||||
0,
|
||||
0,
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||||
0,
|
||||
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||||
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|
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
"20": [
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
"per_class_aggregation_labels": 1,
|
||||
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|
||||
"per_type_aggregation_labels": 481,
|
||||
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|
||||
"reset_same_seed_continuous_chunk_spikes_exact": true,
|
||||
"single_vs_chunk_voltage_max_abs_error": 0.0,
|
||||
"timestamps_present": true
|
||||
}
|
||||
@@ -0,0 +1,4 @@
|
||||
{
|
||||
"route-a-malecns-native": true,
|
||||
"route-b-flyvis-assisted": true
|
||||
}
|
||||
+80
@@ -0,0 +1,80 @@
|
||||
{
|
||||
"official_tbar_snapshot": {
|
||||
"aggregation": "body-level area_to_count-weighted means; official body property used verbatim",
|
||||
"annotation_count": 6168244,
|
||||
"coordinate_space": {
|
||||
"x": [
|
||||
8e-09,
|
||||
"m"
|
||||
],
|
||||
"y": [
|
||||
8e-09,
|
||||
"m"
|
||||
],
|
||||
"z": [
|
||||
8e-09,
|
||||
"m"
|
||||
]
|
||||
},
|
||||
"lower_bound": [
|
||||
23472,
|
||||
5028,
|
||||
11713
|
||||
],
|
||||
"official_property_schema": [
|
||||
"hex1",
|
||||
"hex2",
|
||||
"area_to_count",
|
||||
"r",
|
||||
"theta",
|
||||
"v",
|
||||
"h",
|
||||
"ht",
|
||||
"vic",
|
||||
"area_fit",
|
||||
"body",
|
||||
"roi"
|
||||
],
|
||||
"output": "retinotopy-tbars-body-summary.parquet",
|
||||
"sha256": "dbb4de578bc576c989c0a92be0d5cb29989770d750689255f6639a912234602c",
|
||||
"source_url": "https://storage.googleapis.com/flyem-male-cns/auxiliary-data/retinotopy-tbars/retinotopy_tbar_olr-2026-06-26.precomputed",
|
||||
"unique_body_count": 580,
|
||||
"upper_bound": [
|
||||
73303,
|
||||
47161,
|
||||
41366
|
||||
],
|
||||
"wall_seconds": 347.15394187700076
|
||||
},
|
||||
"paper": {
|
||||
"doi": "10.1016/j.cell.2026.08.014",
|
||||
"role": "official visual-pathway definition reference"
|
||||
},
|
||||
"repositories": {
|
||||
"celltype-explorer": {
|
||||
"commit": "789cc6c105798ce2fd70ba85dab394f90899616b",
|
||||
"expected_commit": "789cc6c105798ce2fd70ba85dab394f90899616b",
|
||||
"license": "CC-BY-4.0",
|
||||
"license_files": [
|
||||
"/data/digital-drosophila/experiments/phase4f-retinotopic-vision/external-resources/celltype-explorer/LICENSE"
|
||||
],
|
||||
"url": "https://github.com/reiserlab/celltype-explorer-drosophila-male-cns"
|
||||
},
|
||||
"flyvis": {
|
||||
"commit": "92b3845cc426dd309a1a0e1b3890156c42e14021",
|
||||
"expected_commit": "92b3845cc426dd309a1a0e1b3890156c42e14021",
|
||||
"license": "MIT",
|
||||
"license_files": [],
|
||||
"url": "https://github.com/TuragaLab/flyvis"
|
||||
},
|
||||
"visualpathways": {
|
||||
"commit": "23f6ac131529b5f56894c6eeb9b88b17894fc00d",
|
||||
"expected_commit": "23f6ac131529b5f56894c6eeb9b88b17894fc00d",
|
||||
"license": "GPL-3.0",
|
||||
"license_files": [
|
||||
"/data/digital-drosophila/experiments/phase4f-retinotopic-vision/external-resources/visualpathways/LICENSE"
|
||||
],
|
||||
"url": "https://github.com/reiserlab/visualpathways"
|
||||
}
|
||||
}
|
||||
}
|
||||
+47
@@ -0,0 +1,47 @@
|
||||
{
|
||||
"all_passed": true,
|
||||
"controls": [
|
||||
{
|
||||
"checked": 4,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/reference-v1/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 7,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/runtime-v1/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 5,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/io-v1/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 73,
|
||||
"checksum_file": "/data/digital-drosophila/experiments/phase4c-runtime/manifests/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 43,
|
||||
"checksum_file": "/data/digital-drosophila/experiments/phase4d-io/manifests/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 166,
|
||||
"checksum_file": "/data/digital-drosophila/experiments/phase4e-visual-calibration/manifests/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
},
|
||||
{
|
||||
"checked": 5,
|
||||
"checksum_file": "/data/digital-drosophila/models/male-cns-lif/visual-interface-v2/checksums.sha256",
|
||||
"failures": [],
|
||||
"passed": true
|
||||
}
|
||||
]
|
||||
}
|
||||
+60
@@ -0,0 +1,60 @@
|
||||
{
|
||||
"route-a-malecns-native": {
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
},
|
||||
"46102": {
|
||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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|
||||
"matched": true
|
||||
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|
||||
"46103": {
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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||||
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|
||||
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|
||||
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|
||||
"46102": {
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
"matched": true
|
||||
},
|
||||
"46103": {
|
||||
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|
||||
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|
||||
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|
||||
"event_counts": [
|
||||
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|
||||
"matched": true
|
||||
}
|
||||
}
|
||||
}
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,115 @@
|
||||
phase: 4F
|
||||
names:
|
||||
reference: MaleCNS-LIF-reference-v1
|
||||
runtime: MaleCNS-LIF-runtime-v1
|
||||
io_api: MaleCNS-BrainIO-v1
|
||||
activity_stream: MaleCNS-ActivityStream-v1
|
||||
encoder: MaleCNS-VisualEncoder-v1
|
||||
candidate: MaleCNS-VisualEncoder-v1-candidate
|
||||
|
||||
paths:
|
||||
connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
|
||||
model_root: /data/digital-drosophila/models/male-cns-lif
|
||||
reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
|
||||
runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
|
||||
io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
|
||||
phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
|
||||
phase4d_root: /data/digital-drosophila/experiments/phase4d-io
|
||||
phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
|
||||
experiment_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
|
||||
encoder_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
|
||||
external_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision/external-resources
|
||||
|
||||
device:
|
||||
required_name_substring: RTX 4090
|
||||
launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
|
||||
|
||||
model:
|
||||
dt_ms: 0.1
|
||||
membrane_tau_ms: 20.0
|
||||
synaptic_tau_ms: 5.0
|
||||
refractory_ms: 2.2
|
||||
resting_potential_mv: -52.0
|
||||
reset_potential_mv: -52.0
|
||||
threshold_mv: -45.0
|
||||
synaptic_delay_ms: 1.8
|
||||
w_syn_mv_per_anatomical_synapse: 0.275
|
||||
|
||||
sign_policy:
|
||||
neurotransmitter_sign: {acetylcholine: 1, gaba: -1, glutamate: -1, dopamine: 1, octopamine: 1, serotonin: 1, histamine: -1}
|
||||
unknown_sign: 0
|
||||
unclear_sign: 0
|
||||
|
||||
official_resources:
|
||||
visualpathways_commit: 23f6ac131529b5f56894c6eeb9b88b17894fc00d
|
||||
celltype_explorer_commit: 789cc6c105798ce2fd70ba85dab394f90899616b
|
||||
flyvis_commit: 92b3845cc426dd309a1a0e1b3890156c42e14021
|
||||
retinotopy_tbar_url: https://storage.googleapis.com/flyem-male-cns/auxiliary-data/retinotopy-tbars/retinotopy_tbar_olr-2026-06-26.precomputed
|
||||
paper_doi: 10.1016/j.cell.2026.08.014
|
||||
|
||||
encoder:
|
||||
trial_duration_ms: 100.0
|
||||
temporal_segments: 5
|
||||
targets_per_segment: 460
|
||||
poisson_rate_hz: 50.0
|
||||
external_drive_mv: 8.8
|
||||
seeds: [46101, 46102, 46103]
|
||||
flyvis_bridge:
|
||||
geometry: regular axial hex lattice sized from official MaleCNS unique eye columns
|
||||
coordinate_equations: exact public flyvis.utils.hex_utils get_hex_coords/hex_to_pixel default convention
|
||||
channel_weights: {luminance: 1.0, on_change: 1.0, off_change: 1.0, temporal_motion: 0.5, horizontal_motion_tendency: 1.0, vertical_motion_tendency: 1.0}
|
||||
target_expression: annotation_superclass in [visual_projection, visual_projection_tbc] with retinotopic coordinate
|
||||
patterns:
|
||||
- full-field
|
||||
- left-spot
|
||||
- right-spot
|
||||
- upper-spot
|
||||
- lower-spot
|
||||
- left-to-right
|
||||
- right-to-left
|
||||
- up-to-down
|
||||
- down-to-up
|
||||
- looming
|
||||
- sparse-moving-object
|
||||
- static-object
|
||||
matched_pairs:
|
||||
- [left-spot, right-spot]
|
||||
- [upper-spot, lower-spot]
|
||||
- [left-to-right, right-to-left]
|
||||
- [up-to-down, down-to-up]
|
||||
- [looming, left-to-right]
|
||||
- [sparse-moving-object, static-object]
|
||||
runaway: {active_fraction_gte: 0.80, mean_firing_rate_hz_gte: 100.0, peak_step_fraction_gte: 0.10}
|
||||
|
||||
success_gate:
|
||||
minimum_separable_matched_pairs_in_descending_or_motor: 2
|
||||
minimum_graph_hops: 2
|
||||
maximum_output_latency_ms: 100.0
|
||||
require_non_runaway: true
|
||||
require_frozen_regression: true
|
||||
|
||||
readout:
|
||||
bins_ms: [1, 5, 10, 20, 50]
|
||||
|
||||
regression:
|
||||
float_absolute_tolerance: 0.00390625
|
||||
reference_trials:
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
File diff suppressed because it is too large
Load Diff
+2738
File diff suppressed because it is too large
Load Diff
+12
@@ -0,0 +1,12 @@
|
||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
@@ -0,0 +1,36 @@
|
||||
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||||
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|
||||
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|
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File diff suppressed because it is too large
Load Diff
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File diff suppressed because it is too large
Load Diff
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||||
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||||
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||||
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|
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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||||
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||||
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Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user