Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

models/male-cns-lif/timing-audit-v1/phase4r.yaml

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+phase: 4R
+name: KC-US timing and calibration protocol audit
+experiment_root: /data/digital-drosophila/experiments/phase4r-timing-audit
+model_root: /data/digital-drosophila/models/male-cns-lif/timing-audit-v1
+runtime_root: /data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2
+phase4p_root: /data/digital-drosophila/experiments/phase4p-deterministic-runtime
+phase4q_root: /data/digital-drosophila/experiments/phase4q-credit-v3
+phase4q_model: /data/digital-drosophila/models/male-cns-lif/credit-v3
+calibration_seeds: [52101, 52102, 52103, 52104, 52105]
+heldout_seeds: [52201, 52202, 52203, 52204, 52205]
+windows_ms: [5, 10, 20, 50, 100, 250]
+duration_ms: 120
+matched_us_ms: 90
+target_compartment: "y5B'2a"
+matched_dan_type: PAM15
+random_q_seed_base: 930000
+random_n_seed_base: 950000
+conditions: [no_external_US, matched_90ms, random_Q_0_120ms, random_N_30_110ms]
+histogram_bin_ms: 5
+runtime_repeats: 10
+reference_repeats: 2
+analysis:
+  timing_grid: every 0.1 ms on unchanged no-external-US KC events
+  random_q_expectation: exact discrete uniform mean over steps 0..1199
+  random_n_expectation: round(uniform(30,110)/dt), half-weight endpoints
+  arrival_semantics: audit KC emission and KC arrival separately; also shift both KC and US by identical 18 steps
+  new_timing_selection: none
+  learning: none
+  heldout_use: replication of diagnosis only, never parameter selection