Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

2026-09-29 03:38:32 +08:00
commit 3981628ff8
682 changed files with 161475 additions and 0 deletions
@@ -0,0 +1,51 @@
+phase: 4P
+name: MaleCNS-LIF-runtime-v2-deterministic-candidate
+description: Shiu-like LIF dynamics adapted to MaleCNS v1.0 with canonical deterministic float32 reduction
+paths:
+  connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
+  historical_runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
+  historical_phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
+  phase4o_root: /data/digital-drosophila/experiments/phase4o-runtime-credit
+  model_root: /data/digital-drosophila/models/male-cns-lif/deterministic-runtime-v2
+  experiment_root: /data/digital-drosophila/experiments/phase4p-deterministic-runtime
+expected_graph: {neurons: 166700, directed_edges: 25582938, synaptic_contact_weight_sum: 124177617}
+model:
+  dt_ms: 0.1
+  membrane_tau_ms: 20.0
+  synaptic_tau_ms: 5.0
+  refractory_ms: 2.2
+  resting_potential_mv: -52.0
+  reset_potential_mv: -52.0
+  threshold_mv: -45.0
+  synaptic_delay_ms: 1.8
+  w_syn_mv_per_anatomical_synapse: 0.275
+  integration: forward_euler
+sign_policy:
+  neurotransmitter_sign: {acetylcholine: 1, gaba: -1, glutamate: -1, histamine: -1, dopamine: 1, octopamine: 1, serotonin: 1}
+  unknown_sign: 0
+  unclear_sign: 0
+device:
+  required_name_substring: RTX 4090
+  visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
+canonical_contract:
+  contribution_key: [target_idx, source_idx, edge_id]
+  equivalent_implementation_key: [target_idx, edge_id]
+  edge_id_property: CSR edge_id is globally ordered by source row and within-row edge position
+  accumulation: sequential IEEE-754 float32 round-to-nearest-even using __fadd_rn
+  state_update: fused explicit IEEE-754 float32 operations using __fmul_rn/__fadd_rn/__fsub_rn
+  threshold: V >= V_threshold
+reference_trials:
+  - {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
+  - {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
+  - {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+  - {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+  - {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
+repeats_per_trial: 20
+fanout_test_cases: 500
+eligibility_fixed_event_repeats: 10
+prohibitions:
+  modify_biological_parameters: true
+  overwrite_historical_reference: true
+  nondeterministic_atomic_scientific_backend: true
+  threshold_epsilon: true
+  learning: true