Archive MaleCNS research sources, provenance, bibliography and immutable data inventory

2026-09-29 03:38:32 +08:00
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+# MaleCNS LIF Phase 4A
+
+Auditable, single-RTX-4090 whole-connectome LIF baseline. It consumes only the
+validated Phase 3B neuron-only products and never writes to the dataset tree.
+
+Run with the exact GPU UUID to prevent accidental V100 or mixed-GPU use:
+
+```bash
+CUDA_VISIBLE_DEVICES=GPU-79f3a85d-adce-7833-7003-6488140ca596 \
+  .venv/bin/python phase4a.py \
+  --config /data/digital-drosophila/experiments/phase4a-baseline/config/baseline.yaml
+```
+
+The raw `int64` synapse-count array remains read-only. The configured transform
+creates a separate signed `float32` effective-weight array. Spike output is a
+sparse Parquet event table, never a dense time-by-neuron matrix.
+
+The baseline parameters are FlyWire-inspired modeling defaults, not MaleCNS
+single-cell measurements. Synthetic drive amplitudes are deterministic smoke-test
+inputs and are not a biological calibration.