phase: 4H
execution:
  mode: two-stage
  stage1_only_entrypoint: phase4h_audit.py
  require_stage1_pass_before_conditioning: true

paths:
  connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
  model_root: /data/digital-drosophila/models/male-cns-lif/dopamine-plasticity-v1
  learned_root: /data/digital-drosophila/models/learned/phase4h
  experiment_root: /data/digital-drosophila/experiments/phase4h-dopamine-plasticity
  reference_root: /data/digital-drosophila/models/male-cns-lif/reference-v1
  runtime_root: /data/digital-drosophila/models/male-cns-lif/runtime-v1
  io_root: /data/digital-drosophila/models/male-cns-lif/io-v1
  phase4c_root: /data/digital-drosophila/experiments/phase4c-runtime
  phase4d_root: /data/digital-drosophila/experiments/phase4d-io
  phase4e_root: /data/digital-drosophila/experiments/phase4e-visual-calibration
  phase4f_root: /data/digital-drosophila/experiments/phase4f-retinotopic-vision
  phase4f_model_root: /data/digital-drosophila/models/male-cns-lif/visual-encoder-v1
  phase4g_root: /data/digital-drosophila/experiments/phase4g-frozen-interface
  phase4g_model_root: /data/digital-drosophila/models/male-cns-lif/frozen-interface-v1
  phase4g_learned_root: /data/digital-drosophila/models/learned/phase4g

expected_graph:
  neurons: 166700
  directed_edges: 25582938
  synaptic_contact_weight_sum: 124177617

audit:
  exact_class_values:
    KC: Kenyon_Cell
    MBON: MBON
    DAN: DAN
  pam_type_prefix: PAM
  ppl1_type_prefix: PPL1
  compartment_source_field: annotation_instance
  compartment_parser: single_parenthesized_substring_verbatim
  require_exact_compartment_string_match: true
  candidate_requires_actual_kc_mbon_edge: true
  candidate_requires_actual_dan_mbon_edge: true
  candidate_requires_exact_dan_mbon_compartment_match: true
  do_not_infer_missing_compartment_from_type: true

plasticity:
  base_connectome_mode: read_only
  overlay_equation: effective_weight = base_weight + plastic_delta
  rule: delta_w = polarity_compartment * eta * D_compartment(t) * eligibility_ij(t)
  first_version_rule_family: compartment_specific_dopamine_gated_anti_hebbian_depression
  default_confirmed_compartment_polarity: -1
  unknown_compartment_policy: exclude_from_plastic_mask
  pam_ppl1_cluster_valence_policy: prohibited
  reward_interface_interpretation: artificial_unconditioned_signal_not_dopamine_concentration
  polarity_provenance:
    - https://pubmed.ncbi.nlm.nih.gov/26637800/
    - https://pubmed.ncbi.nlm.nih.gov/25535793/
    - https://www.nature.com/articles/s41586-024-07819-w

prohibitions:
  modify_phase1_to_phase4g: false
  conditioning_during_stage1: false
  weight_update_during_stage1: false
  infer_unknown_mapping: false
  train_base_brain: false