phase: 4C
names:
  reference: MaleCNS-LIF-reference-v1
  runtime: MaleCNS-LIF-runtime-v1
  description: Shiu-like LIF dynamics adapted to MaleCNS v1.0

paths:
  connectome_root: /data/digital-drosophila/datasets/male-cns-v1.0/processed/neuron-only
  phase4b_root: /data/digital-drosophila/experiments/phase4b-dynamics
  model_root: /data/digital-drosophila/models/male-cns-lif
  experiment_root: /data/digital-drosophila/experiments/phase4c-runtime

expected_graph:
  neurons: 166700
  directed_edges: 25582938
  synaptic_contact_weight_sum: 124177617
  isolated_neurons: 217
  self_loops: 101

device:
  required_name_substring: RTX 4090
  launcher_visible_gpu_uuid: GPU-79f3a85d-adce-7833-7003-6488140ca596
  mixed_multi_gpu: false

model:
  dt_ms: 0.1
  membrane_tau_ms: 20.0
  synaptic_tau_ms: 5.0
  refractory_ms: 2.2
  resting_potential_mv: -52.0
  reset_potential_mv: -52.0
  threshold_mv: -45.0
  synaptic_delay_ms: 1.8
  w_syn_mv_per_anatomical_synapse: 0.275
  integration: forward_euler
  refractory_g_policy: g continues to decay and receive exact delayed events while v is clamped at V_reset

sign_policy:
  neurotransmitter_sign:
    acetylcholine: 1
    gaba: -1
    glutamate: -1
    histamine: -1
    dopamine: 1
    octopamine: 1
    serotonin: 1
  unknown_sign: 0
  unclear_sign: 0
  unmapped_policy: error

sensory_populations:
  visual:
    expression: annotation_class == 'visual'
  mechanosensory:
    expression: annotation_class in {'mechanosensory','mechanosensory_tactile','mechanosensory_proprioceptive'} and annotation_subclass != 'auditory'
  olfactory:
    expression: annotation_class == 'olfactory'
  gustatory:
    expression: annotation_class == 'gustatory'
  auditory:
    expression: annotation_subclass == 'auditory'

reference_trials:
  - {name: auditory-10hz, population: auditory, rate_hz: 10, seed: 42001, duration_ms: 1000.0}
  - {name: auditory-100hz, population: auditory, rate_hz: 100, seed: 42001, duration_ms: 1000.0}
  - {name: olfactory-50hz, population: olfactory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
  - {name: mechanosensory-50hz, population: mechanosensory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}
  - {name: gustatory-50hz, population: gustatory, rate_hz: 50, seed: 42003, duration_ms: 1000.0}

visual_dynamics:
  duration_ms: 100.0
  rate_hz: 50
  seed: 43100
  tonic_histamine_baseline_hz: 50
  modulation_rate_hz: 10
  modulation_start_ms: 50.0

benchmark:
  population: auditory
  rate_hz: 10
  seed: 43200
  durations_ms: [10.0, 100.0, 1000.0, 10000.0]
  gpu_sample_interval_seconds: 0.1
  backends: [eager, hybrid-exact, compile-default, compile-reduce-overhead, cudagraph-custom-state, custom-cuda]
  warmup_ms: 10.0

regression:
  require_exact_spike_events: true
  float_absolute_tolerance: 1.0e-5
  reject_on_spike_divergence: true

reproducibility:
  global_seed: 43000
  local_repository_commit: d826733f1c620a2ad0b096c846b9b8e9eb3ac0fa
  deterministic_forced_inputs: true
  source_phase: Phase 4B PASS

prohibitions:
  alter_connectome: false
  alter_raw_synapse_counts: false
  alter_transmitter_signs: false
  train_weights: false
  game_rl_web_3d: false