From 6e33e05ede21b98c0088139e9bc4c049498c4d41 Mon Sep 17 00:00:00 2001 From: Digital Drosophila Archive Date: Thu, 1 Oct 2026 03:42:51 +0800 Subject: [PATCH] Publish licensed data snapshots with LAN LFS transfer and content audits --- .../celltype-explorer/catalog.json | 52 ++ .../celltype-explorer/exclusions.jsonl.gz | 3 + .../celltype-explorer/members.jsonl.gz | 3 + .../celltype-explorer/payload-000000.bin | 3 + .../celltype-explorer/payload-000001.bin | 3 + .../door-data/catalog.json | 51 ++ .../door-data/exclusions.jsonl.gz | 3 + .../door-data/members.jsonl.gz | 3 + .../door-data/payload-000000.bin | 3 + .../malecns-processed/catalog.json | 102 ++++ .../malecns-processed/exclusions.jsonl.gz | 3 + .../malecns-processed/members.jsonl.gz | 3 + .../malecns-processed/payload-000000.bin | 3 + .../malecns-processed/payload-000001.bin | 3 + .../malecns-processed/payload-000002.bin | 3 + .../malecns-processed/payload-000003.bin | 3 + .../malecns-processed/payload-000004.bin | 3 + 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No software execution or model alteration.", + "commit": "23f6ac131529b5f56894c6eeb9b88b17894fc00d", + "repository": "https://github.com/reiserlab/visualpathways" + }, + "schema": "lfs-publication-group-v1", + "secret_scan": "UTF-8 files <=2 MiB, known binary suffixes excluded; fail closed on matching rules", + "source_bytes": 1652696750, + "source_files": 6033, + "source_paths": [ + "experiments/phase4f-retinotopic-vision/external-resources/visualpathways" + ], + "source_root": "/data/digital-drosophila", + "verification_scope": "content snapshot, not a license grant or nested-archive secret audit" +} diff --git a/artifacts/public-resources-20261001/visualpathways/exclusions.jsonl.gz b/artifacts/public-resources-20261001/visualpathways/exclusions.jsonl.gz new file mode 100644 index 0000000..ba39cbc --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/exclusions.jsonl.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c029262724580ef20981316c6f7e9c99d345e1171067f16c5d580c742809a8c +size 218 diff --git a/artifacts/public-resources-20261001/visualpathways/members.jsonl.gz b/artifacts/public-resources-20261001/visualpathways/members.jsonl.gz new file mode 100644 index 0000000..d5426fb --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/members.jsonl.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:335401c3f6cb5b3868b899599bcd7b439c1983a627d97a598a95e9c8d44ad81c +size 292178 diff --git a/artifacts/public-resources-20261001/visualpathways/payload-000000.bin b/artifacts/public-resources-20261001/visualpathways/payload-000000.bin new file mode 100644 index 0000000..d04ed63 --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/payload-000000.bin @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7f8bb35dcb565c16ff1bf642e079c54c71e27e05cccaa5915c1d1e3c9e7d0700 +size 67108864 diff --git a/artifacts/public-resources-20261001/visualpathways/payload-000001.bin b/artifacts/public-resources-20261001/visualpathways/payload-000001.bin new file mode 100644 index 0000000..b4bba7c --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/payload-000001.bin @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7181f79ec2615a84f33b394abf22454b72d2fddfb0e40e9c5e1590fe1ba64d7a +size 67108864 diff --git a/artifacts/public-resources-20261001/visualpathways/payload-000002.bin b/artifacts/public-resources-20261001/visualpathways/payload-000002.bin new file mode 100644 index 0000000..88a361a --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/payload-000002.bin @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9dc076afd8cd8ebbbdda6f1ef24a41598e5db9fb0a98de8b5b765b4b0a8d2934 +size 67108864 diff --git a/artifacts/public-resources-20261001/visualpathways/payload-000003.bin b/artifacts/public-resources-20261001/visualpathways/payload-000003.bin new file mode 100644 index 0000000..5fde6ec --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/payload-000003.bin @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be03beac2472e6dc76a5705440296f88a8f6e15ea43f541df402c7b6c85cfdc6 +size 67108864 diff --git a/artifacts/public-resources-20261001/visualpathways/payload-000004.bin b/artifacts/public-resources-20261001/visualpathways/payload-000004.bin new file mode 100644 index 0000000..1f00ec9 --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/payload-000004.bin @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0c801486169d0594471518a75b11b040acb1a2dd8904e9365fa7b7b667fc4a09 +size 67108864 diff --git a/artifacts/public-resources-20261001/visualpathways/payload-000005.bin b/artifacts/public-resources-20261001/visualpathways/payload-000005.bin new file mode 100644 index 0000000..16d9b62 --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/payload-000005.bin @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f387b9e6b47f06871ce1b32e265b3a1ae2d78e06d7955a3fa8ed7cfc1d2a0a7 +size 67108864 diff --git a/artifacts/public-resources-20261001/visualpathways/payload-000006.bin b/artifacts/public-resources-20261001/visualpathways/payload-000006.bin new file mode 100644 index 0000000..7314b8a --- /dev/null +++ b/artifacts/public-resources-20261001/visualpathways/payload-000006.bin @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:edb0ffa74e646712485a0d5fd2819ef14345c637beeaa5ca811ae3e71a06ea82 +size 31805270 diff --git a/registry/publication-20261001/README.md b/registry/publication-20261001/README.md index 3977248..f50dc4d 100644 --- a/registry/publication-20261001/README.md +++ b/registry/publication-20261001/README.md @@ -34,8 +34,18 @@ DoOR 作者为 Daniel Münch、C. Giovanni Galizia、Shouwen Ma、Martin Strauch `pack-summary.json` 存在且 complete=true 仅表示本地打包完成，不等于上传/远程恢复成功。上传后使用独立 clone 和新的 LFS object store 实际下载，再逐块、逐归档、逐内部文件流式校验。对应 receipt 只有在真实校验完成后才会提交。 +本批实际范围：8 组、226,859 个原文件、24,040,546,041 字节；tar+zstd 分块总计 9,806,419,307 字节（不含小型目录/成员清单）。本地完整内容校验已通过。226,849 个文件与 2026-09-29 历史索引逐 SHA/大小吻合，另 10 个后增参考文件不在该旧索引，明确记为部分历史覆盖；其中 synaptic-partners 登记 SHA、作者模型 LICENSE pin 另有校验，来源原记录随包保留。不得把这次检查描述为所有历史科学阶段重新通过。 + 本次不是服务器所有内容的完整灾备。Gitea LFS 与 Git 仓库数据目录均需另有服务端备份；删除服务端 LFS 对象会破坏恢复能力。尚未核验 Gitea 主机磁盘容量和备份策略。 +### 本次内网传输 + +Git SSH 本来使用 `192.168.10.31:2222`，但服务器返回的 LFS HTTPS 域名在本机解析到代理地址，导致大对象传输很慢。本次使用仓库本地的 `malecns-lan-https` transfer adapter：TCP 只连接 `192.168.10.31:443`，TLS SNI/证书验证仍使用 `git.lain.asia`，不关闭证书检查、不修改 hosts、系统代理或 Gitea 服务配置。通过原 SSH key 获取短期鉴权，凭据只保留在内存并经标准输入交给 curl，不写入提交或命令行参数。 + +adapter 遵循 [Git LFS 官方 custom-transfer 协议](https://github.com/git-lfs/git-lfs/blob/main/docs/custom-transfers.md)，只允许该仓库的 HTTPS API/object 路径；Gitea 的 `Transfer-Encoding: chunked` 只在上传 PUT 场景被精确处理。它仍上传标准 LFS 对象，其他电脑可以继续使用普通 Git LFS 下载，不依赖这个内网 adapter。并发为 2，分块可重试；科学实验不得因此重启或重试。 + +最初通过代理的核心数据 push 为切换路线而主动停止，未完成的远端分支更新不计为成功。Git 提交和已传对象保留，后续按内容地址续传；严格 header 校验曾在开始 PUT 前拒绝服务器 chunked header，适配后再测试，未改变任何源文件。最终状态以独立下载回执为准，不把这些准备动作记为完成。 + ## 安全恢复（Linux 示例） 先安装 Git LFS、Python 3 和 zstd。只在新目录恢复，不要覆盖运行中的 `/data/digital-drosophila`。 diff --git a/registry/publication-20261001/lan-roundtrip-smoke.json b/registry/publication-20261001/lan-roundtrip-smoke.json new file mode 100644 index 0000000..940c9e6 --- /dev/null +++ b/registry/publication-20261001/lan-roundtrip-smoke.json @@ -0,0 +1,40 @@ +{ + "adapter": { + "bytes": 16661, + "sha256": "21241d6a75d84108e720b4a051504fff00158b327f15c0ee06e5c57c6ad1c263" + }, + "certificate_verification": true, + "hostname": "git.lain.asia", + "ip": "192.168.10.31", + "observed_utc": "2026-09-30T19:40:34.704953+00:00", + "pass_all": true, + "port": 443, + "proxy_used": false, + "schema": "lfs-lan-roundtrip-smoke-v1", + "transfers": 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"current_members_without_regular_history": 10, + "historical_regular_files_outside_publication": 3390, + "missing_sample": [ + "experiments/phase4aa-apl-pn-scope/external-resources/evidence-and-limitations.json", + "experiments/phase4aa-apl-pn-scope/external-resources/official-data-access.json", + "experiments/phase4aa-apl-pn-scope/external-resources/synaptic-partners/authorization-and-source.json", + "experiments/phase4aa-apl-pn-scope/external-resources/synaptic-partners/download-verification.json", + "experiments/phase4aa-apl-pn-scope/external-resources/synaptic-partners/syn-partners-male-cns-v1.0-minconf-0.5.feather", + "experiments/phase4aa-apl-pn-scope/external-resources/synaptic-partners/upstream-object.json", + "experiments/phase4ac-lif-semantics/external-resources/LICENSE", + "experiments/phase4ac-lif-semantics/external-resources/environment_full.yml", + "experiments/phase4ac-lif-semantics/external-resources/model.py", + 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"/tmp/malecns-lfs-publication-20261001-bI1u07/repo/artifacts/public-resources-20261001/plan.json", + "sha256": "a20a61821c504e8315171a5fd14afbac011b934709af344045175bdda9fcba71" + }, + "receipt": "/tmp/malecns-lfs-publication-20261001-bI1u07/repo/registry/publication-20261001/local-content-verification.json", + "schema": "lfs-publication-aggregate-verification-v1", + "scope": "Given payload bytes verified against plan/catalog/members and optional historical overlap; provenance/plan authenticity and fresh-clone transfer evidence are caller responsibilities", + "source_bytes": 24040546041, + "source_files": 226859, + "verified_utc": "2026-09-30T19:36:33.592474+00:00" +} diff --git a/registry/publication-20261001/source-guard-after-pack.json b/registry/publication-20261001/source-guard-after-pack.json new file mode 100644 index 0000000..05bbb9d --- /dev/null +++ b/registry/publication-20261001/source-guard-after-pack.json @@ -0,0 +1,123 @@ +{ + "disk_free_bytes": { + 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"schema": "lfs-publication-source-guard-v1", + "scope": "16 registered Phase 4AR source files, registration, pinned upstream checkout and license evidence; not a scientific rerun or full historical checksum audit" +} diff --git a/registry/publication-20261001/tool-tests.json b/registry/publication-20261001/tool-tests.json new file mode 100644 index 0000000..6bf9f35 --- /dev/null +++ b/registry/publication-20261001/tool-tests.json @@ -0,0 +1,15 @@ +{ + "schema": "lfs-publication-tool-tests-v1", + "observed_utc": "2026-09-30T19:40:34Z", + "environment": "isolated Linux publication checkout; system python3 -B, installed zstd", + "command": "python3 -B -m unittest discover -s tools/lfs-publication -p test_*.py", + "exit_code": 0, + "tests_run": 66, + "skipped": 0, + "failures": 0, + "errors": 0, + "reported_wall_seconds": 0.992, + "suites": {"archive": 18, "aggregate": 14, "download_wrapper": 12, "lan_adapter": 22}, + "scope": "Archive suite includes real zstd integration. Transport/config failure tests use synthetic fixtures and mocks; actual LAN transfer is independently recorded in lan-roundtrip-smoke.json.", + "scientific_trials_executed": false +} diff --git a/tools/lfs-publication/download_verify.py b/tools/lfs-publication/download_verify.py new file mode 100644 index 0000000..64cdf0f --- /dev/null +++ b/tools/lfs-publication/download_verify.py @@ -0,0 +1,232 @@ +"""Fresh-cache transport verification for one independent publication checkout. + +Run only from its top level. This is not a scientific audit or authorization to +publish. Failed attempts retain their cache/partial files and are never retried. +Git/LFS output is suppressed; receipts contain no environment or auth headers. +The caller supplies the trusted commit. Tool source SHA pins are observations, +not signatures; executable versions are not executable-byte identity proofs. +""" +from __future__ import annotations + +import argparse +from datetime import datetime, timezone +import hashlib +import json +from pathlib import Path +import re +import stat +import subprocess +import sys + +import publish_archives as archives +import verify_publication as content + +REMOTE = "ssh://git@192.168.10.31:2222/qishizhe/digital-drosophila.git" +PAYLOAD = "artifacts/public-resources-20261001" +PROTECTED = Path("/data/digital-drosophila") +TRANSFER_OVERRIDES = (r"^(lfs\.(url|pushurl|standalonetransferagent|customtransfer\..*|" + r"remote\.(autodetect|searchall))|remote\.(lfsdefault|origin\.lfsurl))$") + + +def require(condition, message): + if not condition: + raise ValueError(message) + + +def within(path, root): + return path == root or root in path.parents + + +def command(args, *, text=False, bytes_output=False): + """Never return or print command diagnostics, which may contain credentials.""" + result = subprocess.run(args, stdin=subprocess.DEVNULL, stderr=subprocess.DEVNULL, + stdout=subprocess.PIPE if text or bytes_output else subprocess.DEVNULL, + check=False) + if text or bytes_output: + require(result.returncode == 0, "Read-only Git/tool identity command failed") + if bytes_output: + return result.stdout + return result.stdout.decode("utf-8", errors="strict").strip() + return result.returncode + + +def identity(expected, checkout): + require(command(["git", "rev-parse", "--verify", "HEAD"], text=True) == expected, + "HEAD differs from expected commit") + require(archives.no_links(command(["git", "rev-parse", "--show-toplevel"], text=True)) == checkout, + "Run from the independent checkout top level") + require(archives.no_links(command(["git", "rev-parse", "--absolute-git-dir"], text=True)) == checkout / ".git", + "External/linked Git directory refused") + require(command(["git", "remote", "get-url", "--all", "origin"], text=True) == REMOTE, + "Origin must exactly match the approved remote") + + +def transfer_policy(checkout, expected_commit, allow_lan_adapter=False): + require(not (checkout / ".lfsconfig").exists() and not (checkout / ".lfsconfig").is_symlink(), + "Repository LFS endpoint overrides refused") + if not allow_lan_adapter: + # Exit 1 means no matches; potential credential values are never read. + require(command(["git", "config", "--get-regexp", TRANSFER_OVERRIDES]) == 1, + "LFS endpoint/custom-transfer override or unreadable configuration refused") + return None + relative = "tools/lfs-publication/lan_lfs_transfer.py" + adapter = archives.no_links(checkout / relative) + require(not any(c.isspace() for c in str(adapter)), "LAN adapter path must not require argument quoting") + prefix = "lfs.customtransfer.malecns-lan-https." + allowed = {"lfs.standalonetransferagent": "malecns-lan-https", + prefix + "path": "/usr/bin/python3", prefix + "args": "-B " + str(adapter), + prefix + "concurrent": "true", prefix + "direction": "both"} + keys = command(["git", "config", "--name-only", "--get-regexp", TRANSFER_OVERRIDES], text=True).splitlines() + require(len(keys) == len(allowed) and set(keys) == set(allowed), + "Only the exact approved LAN adapter configuration is permitted") + for key, value in allowed.items(): + require(command(["git", "config", "--local", "--get-all", key], text=True) == value + and command(["git", "config", "--get-all", key], text=True) == value, + "LAN adapter configuration must be exact and exclusively repository-local") + pin = archives.sha_file(adapter) + blob = command(["git", "show", expected_commit + ":" + relative], bytes_output=True) + require(len(blob) == pin["bytes"] and hashlib.sha256(blob).hexdigest() == pin["sha256"], + "LAN adapter must exactly match the expected HEAD blob") + return {"path": str(adapter), **pin} + + +def new_output(path, checkout, cache, payload): + p = archives.no_links(path) + require(not within(p, PROTECTED.absolute()), "Output under original project refused") + require(within(p, checkout.parent), "Output must stay in the independent workspace") + require(not within(p, payload) and not within(p, checkout / ".git") + and not within(p, checkout / "artifacts") and not within(p, cache), + "Receipt must be outside payload, artifacts, Git and cache trees") + require(not p.exists() and p.parent.is_dir(), "Receipt must be new with an existing parent") + return p + + +def cache_inventory(cache): + count = total = 0 + objects = cache / "objects" + if not objects.exists(): + return {"objects": 0, "bytes": 0} + archives.no_links(objects) + require(objects.is_dir(), "LFS objects must be a directory") + for p in objects.rglob("*"): + archives.no_links(p) + s = p.lstat() + if stat.S_ISDIR(s.st_mode): + continue + require(stat.S_ISREG(s.st_mode), "Nonregular cache object refused") + parts = p.relative_to(objects).parts + require(len(parts) == 3 and archives.HEX.fullmatch(parts[2]) is not None + and parts[0] == parts[2][:2] and parts[1] == parts[2][2:4], + "Unexpected LFS object layout") + count += 1 + total += s.st_size + return {"objects": count, "bytes": total} + + +def source_pins(adapter=None): + result = {name: {"path": str(Path(path).absolute()), **archives.sha_file(path)} + for name, path in (("download_verify.py", __file__), + ("verify_publication.py", content.__file__), + ("publish_archives.py", archives.__file__))} + if adapter is not None: + result["lan_lfs_transfer.py"] = {"path": adapter["path"], **archives.sha_file(adapter["path"])} + return result + + +def run(expected_commit, cache, receipt, content_receipt, historical_inventory, *, allow_lan_adapter=False): + require(isinstance(expected_commit, str) and re.fullmatch(r"[0-9a-f]{40}", expected_commit), + "Expected commit must be a complete lowercase SHA-1") + checkout = archives.no_links(Path.cwd()) + require(not within(checkout, PROTECTED.absolute()), "Original project checkout refused") + gitdir = archives.no_links(checkout / ".git") + require(gitdir.is_dir(), "Only an independent clone with its own .git directory is accepted") + identity(expected_commit, checkout) + adapter = transfer_policy(checkout, expected_commit, allow_lan_adapter) + require(not command(["git", "status", "--porcelain", "--untracked-files=no"], text=True), + "Tracked checkout changes refused") + cache = archives.no_links(cache) + require(not within(cache, PROTECTED.absolute()), "Cache under original project refused") + require(within(cache, gitdir) or (within(cache, checkout.parent) and not within(cache, checkout)), + "Cache must be inside this .git or outside checkout in the independent workspace") + require(not cache.exists() and cache.parent.is_dir(), "Cache must never have existed for this attempt") + payload = archives.no_links(checkout / PAYLOAD) + receipt = new_output(receipt, checkout, cache, payload) + content_receipt = new_output(content_receipt, checkout, cache, payload) + history = archives.no_links(historical_inventory) + require(len({receipt, content_receipt, history, cache}) == 4, "Inputs/outputs must be distinct") + history_pin = archives.sha_file(history) + pins = source_pins(adapter) + versions = {"git": command(["git", "--version"], text=True), + "git_lfs": command(["git", "lfs", "version"], text=True), + "zstd": command(["zstd", "--version"], text=True), + "python": sys.version.split()[0]} + started = datetime.now(timezone.utc).isoformat() + cache.mkdir(exist_ok=False) + initial = cache_inventory(cache) + require(initial == {"objects": 0, "bytes": 0}, "New cache is not empty") + print(json.dumps({"stage": "fresh-cache-created", "objects": 0, "bytes": 0}), flush=True) + git = ["git", "-c", "lfs.storage=" + str(cache), "-c", "lfs.concurrenttransfers=2"] + pull = command(git + ["lfs", "pull", "--include=artifacts/**", "--exclude=", "origin"]) + require(pull == 0, "LFS pull failed; cache retained, no automatic retry") + print(json.dumps({"stage": "pull-exited", "exit_code": pull}), flush=True) + fsck = command(git + ["lfs", "fsck", "--dry-run"]) + require(fsck == 0, "LFS fsck failed; cache retained, no automatic retry") + print(json.dumps({"stage": "fsck-exited", "exit_code": fsck}), flush=True) + objects = cache_inventory(cache) + require(objects["objects"] > 0 and objects["bytes"] > 0, "Fresh LFS cache contains no objects") + verified = content.verify_publication(payload, content_receipt, history) + require(verified.get("pass_all") is True + and archives.HEX.fullmatch(str(verified.get("aggregate_inventory_sha256", ""))) is not None, + "Content verification did not report success") + content_pin = archives.sha_file(content_receipt) + require(content_pin["sha256"] == verified.get("receipt_sha256"), "Content receipt SHA mismatch") + require(archives.sha_file(history) == history_pin and source_pins(adapter) == pins, + "History or verification tool changed during attempt") + identity(expected_commit, checkout) + require(transfer_policy(checkout, expected_commit, allow_lan_adapter) == adapter, + "LAN adapter identity/configuration changed during attempt") + require(cache_inventory(cache) == objects, "Cache object inventory changed during content verification") + report = {"schema": "lfs-publication-download-verification-v1", "pass_all": True, + "started_utc": started, "verified_utc": datetime.now(timezone.utc).isoformat(), + "checkout": str(checkout), "expected_commit": expected_commit, + "head": expected_commit, "origin": REMOTE, + "explicit_pull_remote": "origin", "lfs_endpoint_overrides_refused": True, + "lan_adapter": {"enabled": adapter is not None, "source": adapter, + "configuration_scope": "repository-local only" if adapter else None, + "temporary_download_directory": str(gitdir / "lfs/lan-transfer-tmp") if adapter else None}, + "cache": {"path": str(cache), "initially_absent": True, + "before": initial, "after": objects}, + "pull_exit_code": pull, "fsck_dry_run_exit_code": fsck, + "include": "artifacts/**", "exclude": "", "concurrent_transfers": 2, + "content_receipt": {"path": str(content_receipt), **content_pin}, + "aggregate_inventory_sha256": verified["aggregate_inventory_sha256"], + "historical_inventory": {"path": str(history), **history_pin, + "status": verified.get("historical_status")}, + "tool_sources": pins, "tool_versions": versions, "fresh_download_proven": True, + "learning_pass_claimed": False, "original_project_write_requested": False, + "scope": "Fresh isolated LFS storage, actual pull/fsck exits and complete publication member verification; smoke covered by pull/fsck. Not a scientific gate, all-history audit, or executable-byte identity proof."} + archives.write_new(receipt, archives.canonical(report)) + return report + + +def main(): + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--expected-commit", required=True) + parser.add_argument("--cache", required=True) + parser.add_argument("--receipt", required=True) + parser.add_argument("--content-receipt", required=True) + parser.add_argument("--historical-inventory", required=True) + parser.add_argument("--allow-lan-adapter", action="store_true") + args = parser.parse_args() + try: + run(args.expected_commit, args.cache, args.receipt, args.content_receipt, args.historical_inventory, + allow_lan_adapter=args.allow_lan_adapter) + except (Exception, KeyboardInterrupt) as exc: + print(json.dumps({"status": "FAILED-NOT-RETRIED", "error_type": type(exc).__name__}), flush=True) + return 1 + print(json.dumps({"status": "PASS", "receipt": str(Path(args.receipt).absolute())}), flush=True) + return 0 + + +if __name__ == "__main__": + raise SystemExit(main()) diff --git a/tools/lfs-publication/lan_lfs_transfer.py b/tools/lfs-publication/lan_lfs_transfer.py new file mode 100644 index 0000000..ad35eeb --- /dev/null +++ b/tools/lfs-publication/lan_lfs_transfer.py @@ -0,0 +1,336 @@ +"""Repository-local, LAN-pinned Git LFS standalone transfer agent. + +Protocol: https://github.com/git-lfs/git-lfs/blob/main/docs/custom-transfers.md +Only fixed-origin SSH authentication and HTTPS basic transfers are supported. +No config/network changes, retries, redirects, credential files, or cache-based +download substitution. Credentials are passed to curl exclusively on stdin. +""" +from __future__ import annotations + +import hashlib +import json +import os +from pathlib import Path +import re +import stat +import subprocess +import sys +import tempfile +from urllib.parse import urlsplit + +ORIGIN = "ssh://git@192.168.10.31:2222/qishizhe/digital-drosophila.git" +HOST = "git.lain.asia" +IP = "192.168.10.31" +PREFIX = "/qishizhe/digital-drosophila.git/info/lfs" +SOURCE = Path("/data/digital-drosophila") +OID = re.compile(r"^[0-9a-f]{64}$") +HEADER = re.compile(r"^[!#$%&'*+.^_`|~0-9A-Za-z-]+$") +MAX_JSON = 2 * 1024 * 1024 +BLOCK = 1024 * 1024 + + +class TransferError(Exception): + """Only fixed, non-secret messages may be passed to this class.""" + + +def require(ok, code): + if not ok: + raise TransferError(code) + + +def decode_json(data): + def unique(pairs): + result = {} + for key, value in pairs: + require(key not in result, "duplicate-json-key") + result[key] = value + return result + require(len(data) <= MAX_JSON, "json-response-too-large") + try: + return json.loads(data, object_pairs_hook=unique) + except (UnicodeError, ValueError): + raise TransferError("invalid-json") from None + + +def safe_path(value): + require(isinstance(value, (str, Path)), "invalid-file-path") + p = Path(value) + require(p.is_absolute() and ".." not in p.parts, "absolute-safe-path-required") + for component in (p, *p.parents): + if component.exists() or component.is_symlink(): + s = component.lstat() + require(not stat.S_ISLNK(s.st_mode) and not + (getattr(s, "st_file_attributes", 0) & getattr(stat, "FILE_ATTRIBUTE_REPARSE_POINT", 0)), + "symlink-or-reparse-refused") + return p + + +def safe_url(value): + require(isinstance(value, str) and len(value) <= 16384 and + not any(ord(c) <= 32 or ord(c) == 127 for c in value), "invalid-action-url") + try: + p = urlsplit(value) + valid = (p.scheme == "https" and p.netloc in (HOST, HOST + ":443") and + p.hostname == HOST and p.port in (None, 443) and + p.username is None and p.password is None and not p.fragment) + except ValueError: + raise TransferError("url-authority-refused") from None + require(valid, "url-authority-refused") + require(p.path == PREFIX or p.path.startswith(PREFIX + "/"), "url-repository-prefix-refused") + require("%" not in p.path and "\\" not in p.path and + all(x not in ("", ".", "..") for x in p.path.split("/")[1:]), "url-path-refused") + return value + + +def safe_headers(value, *, allow_upload_chunked=False): + require(isinstance(value, dict) and len(value) <= 32, "invalid-action-headers") + result, seen = {}, set() + denied = {"host", "connection", "content-length", "transfer-encoding", "te", + "trailer", "upgrade", "proxy-authorization", "proxy-connection", "range"} + for key, item in value.items(): + upload_chunked = (allow_upload_chunked is True and isinstance(key, str) and + key.lower() == "transfer-encoding" and item == "chunked") + require(isinstance(key, str) and HEADER.fullmatch(key) is not None and + key.lower() not in seen and (key.lower() not in denied or upload_chunked), + "header-name-refused") + require(isinstance(item, str) and len(item) <= 16384 and + not any(ord(c) < 32 or ord(c) == 127 for c in item), "header-value-refused") + seen.add(key.lower()) + result[key] = item + return result + + +def quote(value): + require(isinstance(value, str) and not any(ord(c) < 32 or ord(c) == 127 for c in value), + "curl-config-value-refused") + return '"' + value.replace("\\", "\\\\").replace('"', '\\"') + '"' + + +def fingerprint(s): + return (s.st_dev, s.st_ino, s.st_mode, s.st_size, s.st_mtime_ns, s.st_ctime_ns) + + +def verify_file(path, oid, size): + path = safe_path(path) + before = fingerprint(path.lstat()) + require(stat.S_ISREG(before[2]) and before[3] == size, "object-file-type-or-size-mismatch") + digest, count = hashlib.sha256(), 0 + with path.open("rb") as handle: + opened = fingerprint(os.fstat(handle.fileno())) + # Windows path stat and fstat can expose different ctime definitions. + require(opened[:-1] == before[:-1] if os.name == "nt" else opened == before, + "object-changed-at-open") + while data := handle.read(BLOCK): + digest.update(data) + count += len(data) + require(fingerprint(os.fstat(handle.fileno())) == opened, "object-changed-during-read") + require(fingerprint(path.lstat()) == before and count == size and digest.hexdigest() == oid, + "object-sha-or-stability-mismatch") + return before + + +def git_output(cwd, *args): + try: + result = subprocess.run(["git", "-C", str(cwd), *args], capture_output=True, + timeout=15, check=False) + require(result.returncode == 0, "git-inspection-failed") + return result.stdout.decode("utf-8").strip() + except (OSError, UnicodeError, subprocess.TimeoutExpired): + raise TransferError("git-inspection-failed") from None + + +class Agent: + def __init__(self, message, emit, cwd=None): + require(message.get("event") == "init" and message.get("operation") in ("upload", "download"), + "invalid-init") + require(message.get("remote") in ("origin", ORIGIN), "remote-refused") + concurrency = message.get("concurrenttransfers") + require(type(concurrency) is int and 1 <= concurrency <= 2 and + type(message.get("concurrent")) is bool, "concurrency-must-be-at-most-two") + cwd = safe_path(Path.cwd() if cwd is None else cwd) + require(cwd != SOURCE and SOURCE not in cwd.parents, "scientific-source-cwd-refused") + self.root = safe_path(git_output(cwd, "rev-parse", "--show-toplevel")) + require(self.root != SOURCE and SOURCE not in self.root.parents, "scientific-source-repository-refused") + require(git_output(cwd, "config", "--get", "remote.origin.url") == ORIGIN, "origin-refused") + self.git_dir = safe_path(git_output(cwd, "rev-parse", "--absolute-git-dir")) + require(self.git_dir == self.root / ".git" and self.git_dir.is_dir(), "ordinary-isolated-clone-required") + self.operation, self.emit = message["operation"], emit + + def authenticate(self): + command = ["ssh", "-o", "BatchMode=yes", "-o", "StrictHostKeyChecking=yes", + "-o", "ConnectTimeout=15", "-o", "ConnectionAttempts=1", + "-o", "ServerAliveInterval=10", "-o", "ServerAliveCountMax=2", + "-p", "2222", "git@192.168.10.31", "git-lfs-authenticate", + "qishizhe/digital-drosophila.git", self.operation] + try: + result = subprocess.run(command, capture_output=True, timeout=45, check=False) + require(result.returncode == 0, "ssh-authentication-failed") + auth = decode_json(result.stdout) + except (OSError, subprocess.TimeoutExpired): + raise TransferError("ssh-authentication-failed") from None + require(isinstance(auth, dict), "invalid-ssh-authentication-response") + href = safe_url(auth.get("href")) + parsed = urlsplit(href) + require(parsed.path == PREFIX and not parsed.query, "authentication-base-url-refused") + return href, safe_headers(auth.get("header", {})) + + def curl(self, method, url, headers, *, body=None, upload=None, download=None, size=None): + safe_url(url) + headers = safe_headers(headers, allow_upload_chunked=(self.operation == "upload" and + method == "PUT" and upload is not None and body is None and download is None)) + require(method in ("GET", "POST", "PUT"), "unsupported-http-method") + present = {name.lower() for name in headers} + if "accept" not in present: + headers["Accept"] = "application/vnd.git-lfs+json" + if method == "PUT" and "content-type" not in present: + headers["Content-Type"] = "application/octet-stream" + if body is not None and "content-type" not in present: + headers["Content-Type"] = "application/vnd.git-lfs+json" + lines = ["url = " + quote(url), "request = " + quote(method), + 'noproxy = "*"', 'resolve = "' + HOST + ':443:' + IP + '"', + 'proto = "=https"', 'proto-redir = "=https"', "max-redirs = 0", + "connect-timeout = 15", "max-time = 1800", "fail", "silent", "show-error", + 'write-out = "\\n%{http_code}"'] + for name, value in headers.items(): + lines.append("header = " + quote(name + ": " + value)) + if body is not None: + encoded = json.dumps(body, separators=(",", ":"), allow_nan=False) + lines.append("data-binary = " + quote(encoded)) + if upload is not None: + lines.append("upload-file = " + quote(str(safe_path(upload)))) + if download is not None: + lines.append("output = " + quote(str(safe_path(download)))) + require(type(size) is int and size >= 0, "invalid-download-limit") + # A zero-byte object still needs a full HTTP fetch, not a cache hit. + lines.append("max-filesize = " + str(max(size, 1))) + else: + lines.append("max-filesize = " + str(MAX_JSON)) + config = ("\n".join(lines) + "\n").encode("utf-8") + try: + result = subprocess.run(["curl", "-q", "--config", "-"], input=config, + capture_output=True, timeout=1830, check=False) + except (OSError, subprocess.TimeoutExpired): + raise TransferError("curl-execution-failed") from None + # Never print stderr, response data, URLs, configuration, or headers. + require(result.returncode == 0, "curl-request-failed") + require(len(result.stdout) <= MAX_JSON + 32, "http-response-too-large") + content, separator, status = result.stdout.rpartition(b"\n") + require(separator and len(status) == 3 and status.isdigit() and 200 <= int(status) < 300, + "non-success-http-status") + return content + + def batch(self, oid, size): + href, headers = self.authenticate() + headers = {k: v for k, v in headers.items() if k.lower() not in ("content-type", "accept")} + headers.update({"Content-Type": "application/vnd.git-lfs+json", "Accept": "application/vnd.git-lfs+json"}) + response = decode_json(self.curl("POST", href + "/objects/batch", headers, + body={"operation": self.operation, "transfers": ["basic"], + "objects": [{"oid": oid, "size": size}]})) + require(isinstance(response, dict) and response.get("transfer", "basic") == "basic", + "non-basic-batch-response") + objects = response.get("objects") + require(isinstance(objects, list) and len(objects) == 1 and isinstance(objects[0], dict), + "invalid-batch-object-count") + item = objects[0] + require(item.get("oid") == oid and type(item.get("size")) is int and item["size"] == size, + "batch-object-identity-mismatch") + require("error" not in item, "batch-object-rejected") + actions = item.get("actions", {}) + require(isinstance(actions, dict), "invalid-batch-actions") + allowed = {"upload", "verify"} if self.operation == "upload" else {"download"} + require(set(actions) <= allowed, "unexpected-batch-action") + for name, action in actions.items(): + require(isinstance(action, dict), "invalid-batch-action") + safe_url(action.get("href")) + safe_headers(action.get("header", {}), allow_upload_chunked=(self.operation == "upload" and name == "upload")) + return actions + + def progress(self, oid, size, previous=0): + self.emit({"event": "progress", "oid": oid, "bytesSoFar": size, "bytesSinceLast": size - previous}) + + def transfer(self, message): + require(message.get("event") == self.operation and message.get("action") is None, + "standalone-operation-required") + oid, size = message.get("oid"), message.get("size") + require(isinstance(oid, str) and OID.fullmatch(oid) is not None and + type(size) is int and 0 <= size <= 2**63 - 1, "invalid-object-identity") + source, before = None, None + if self.operation == "upload": + source = safe_path(message.get("path")) + require(source == self.git_dir / "lfs" / "objects" / oid[:2] / oid[2:4] / oid, + "upload-outside-current-lfs-object-store") + before = verify_file(source, oid, size) + actions = self.batch(oid, size) + self.progress(oid, 0) + if self.operation == "upload": + if "upload" in actions: + action = actions["upload"] + self.curl("PUT", action["href"], action.get("header", {}), upload=source) + require(fingerprint(source.lstat()) == before, "upload-source-changed") + if "verify" in actions: + action = actions["verify"] + headers = {k: v for k, v in action.get("header", {}).items() if k.lower() != "content-type"} + headers["Content-Type"] = "application/vnd.git-lfs+json" + self.curl("POST", action["href"], headers, body={"oid": oid, "size": size}) + else: + require(not actions, "verify-without-upload-refused") + require(fingerprint(source.lstat()) == before, "upload-source-changed") + self.progress(oid, size) + return {"event": "complete", "oid": oid} + require("download" in actions, "download-action-missing") + directory = safe_path(self.git_dir / "lfs" / "lan-transfer-tmp") + directory.mkdir(parents=True, exist_ok=True) + safe_path(directory) + fd, name = tempfile.mkstemp(prefix=oid + ".", suffix=".partial", dir=directory) + os.close(fd) + target = Path(name) + action = actions["download"] + # On failure the uniquely created partial remains for investigation; + # it is never used as a fallback/cache input on a later transfer. + self.curl("GET", action["href"], action.get("header", {}), download=target, size=size) + verify_file(target, oid, size) + self.progress(oid, size) + return {"event": "complete", "oid": oid, "path": str(target)} + + +def emit(value): + sys.stdout.write(json.dumps(value, separators=(",", ":"), allow_nan=False) + "\n") + sys.stdout.flush() + + +def serve(inp=None, send=None, factory=Agent): + inp, send = sys.stdin if inp is None else inp, emit if send is None else send + agent = None + while True: + line = inp.readline(MAX_JSON + 1) + if not line: + return 0 + try: + message = decode_json(line) + require(isinstance(message, dict), "protocol-object-required") + if agent is None: + agent = factory(message, send) + send({}) + elif message.get("event") == "terminate": + return 0 + else: + oid = message.get("oid") + safe_oid = oid if isinstance(oid, str) and OID.fullmatch(oid) else "" + try: + send(agent.transfer(message)) + except Exception as exc: + code = str(exc) if isinstance(exc, TransferError) else "transfer-internal-failure" + send({"event": "complete", "oid": safe_oid, + "error": {"code": 2, "message": code}}) + except Exception as exc: + code = str(exc) if isinstance(exc, TransferError) else "agent-initialization-or-protocol-failure" + if agent is None: + send({"error": {"code": 32, "message": code}}) + else: + # No attacker-supplied raw line or exception text is printed. + sys.stderr.write("lan-lfs: invalid protocol; stopping\n") + return 1 + + +if __name__ == "__main__": + raise SystemExit(serve()) diff --git a/tools/lfs-publication/run_lan_smoke.py b/tools/lfs-publication/run_lan_smoke.py new file mode 100644 index 0000000..8bbb112 --- /dev/null +++ b/tools/lfs-publication/run_lan_smoke.py @@ -0,0 +1,52 @@ +"""One real archive chunk upload and fresh download; never modifies source data.""" +import argparse +import json +from pathlib import Path +import time +from datetime import datetime, timezone + +import lan_lfs_transfer as lan +import publish_archives as archives + + +def run(output): + root = Path.cwd() + receipt = archives.no_links(output) + if receipt.exists() or root / 'registry/publication-20261001' not in receipt.parents: + raise ValueError('New publication receipt required') + catalog = archives.json_read(root / 'artifacts/public-resources-20261001/malecns-synaptic-partners/catalog.json') + chunk = catalog['chunks'][0] + oid, size = chunk['sha256'], chunk['bytes'] + source = root / '.git/lfs/objects' / oid[:2] / oid[2:4] / oid + records = [] + for operation in ('upload', 'download'): + agent = lan.Agent(dict(event='init', operation=operation, remote='origin', + concurrent=True, concurrenttransfers=2), lambda value: None) + original = agent.curl + methods = [] + def observe(method, url, headers, **kwargs): + result = original(method, url, headers, **kwargs) + methods.append(method) + return result + agent.curl = observe + start = time.perf_counter() + result = agent.transfer(dict(event=operation, action=None, oid=oid, size=size, + **({'path': str(source)} if operation == 'upload' else {}))) + record = dict(operation=operation, seconds=time.perf_counter()-start, methods=methods, + sha256=oid, bytes=size, complete=result['event'] == 'complete') + if operation == 'download': + record['new_download_file'] = result['path'] + records.append(record) + report = dict(schema='lfs-lan-roundtrip-smoke-v1', pass_all=True, + observed_utc=datetime.now(timezone.utc).isoformat(), + ip=lan.IP, hostname=lan.HOST, port=443, certificate_verification=True, + proxy_used=False, transfers=records, + adapter=archives.sha_file(lan.__file__)) + archives.write_new(receipt, archives.canonical(report)) + print(json.dumps(report), flush=True) + + +if __name__ == '__main__': + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument('--receipt', required=True) + run(parser.parse_args().receipt) diff --git a/tools/lfs-publication/test_download_verify.py b/tools/lfs-publication/test_download_verify.py new file mode 100644 index 0000000..a2467c8 --- /dev/null +++ b/tools/lfs-publication/test_download_verify.py @@ -0,0 +1,245 @@ +"""Synthetic temporary fixtures and mocked Git/content operations; no transfer.""" +import contextlib +import io +import json +from pathlib import Path +import tempfile +import unittest +from unittest.mock import patch + +import download_verify as D + + +class DownloadTests(unittest.TestCase): + def setUp(self): + self.temp = tempfile.TemporaryDirectory() + self.addCleanup(self.temp.cleanup) + self.base = Path(self.temp.name) + self.checkout = self.base / "verification" + (self.checkout / ".git").mkdir(parents=True) + (self.checkout / "registry").mkdir() + (self.checkout / D.PAYLOAD).mkdir(parents=True) + self.cache = self.checkout / ".git" / "brand-new-lfs" + self.receipt = self.checkout / "registry" / "transport.json" + self.content_receipt = self.checkout / "registry" / "content.json" + self.history = self.base / "history.gz" + self.history.write_bytes(b"synthetic history placeholder") + self.commit = "a" * 40 + self.calls = [] + self.pull_code = self.fsck_code = 0 + self.remote = D.REMOTE + self.head = self.commit + self.dirty = "" + self.content_failure = False + self.config_exit = 1 + self.adapter_config = {} + self.local_adapter_config = {} + self.adapter_blob = b"# Synthetic LAN adapter fixture; never executed.\n" + self.addCleanup(patch.stopall) + patch.object(D.Path, "cwd", return_value=self.checkout).start() + patch.object(D, "command", side_effect=self.command).start() + self.verifier = patch.object(D.content, "verify_publication", side_effect=self.verify).start() + self.capture = contextlib.redirect_stdout(io.StringIO()) + self.capture.__enter__() + self.addCleanup(self.capture.__exit__, None, None, None) + + def command(self, args, *, text=False, bytes_output=False): + self.calls.append(args) + if "rev-parse" in args: + if "HEAD" in args: + return self.head + return str(self.checkout / ".git") if "--absolute-git-dir" in args else str(self.checkout) + if "remote" in args: + return self.remote + if "status" in args: + return self.dirty + if "--get-regexp" in args: + if "--name-only" in args: + return "\n".join(self.adapter_config) + return self.config_exit + if "--get-all" in args: + values = self.local_adapter_config if "--local" in args else self.adapter_config + return values.get(args[-1], "") + if "show" in args: + return self.adapter_blob + if "pull" in args: + oid = "f" * 64 + obj = self.cache / "objects" / oid[:2] / oid[2:4] / oid + obj.parent.mkdir(parents=True) + obj.write_bytes(b"synthetic object") + return self.pull_code + if "fsck" in args: + return self.fsck_code + return "synthetic-version" + + def verify(self, root, receipt, history): + self.assertEqual(root, self.checkout / D.PAYLOAD) + self.assertEqual(history, self.history) + if self.content_failure: + raise ValueError("synthetic failure") + D.archives.write_new(receipt, b'{"synthetic":true}\n') + return {"pass_all": True, "receipt_sha256": D.archives.sha_file(receipt)["sha256"], + "aggregate_inventory_sha256": "b" * 64, "historical_status": "FULL_CURRENT_MEMBER_MATCH"} + + def run_attempt(self): + return D.run(self.commit, self.cache, self.receipt, self.content_receipt, self.history) + + def prepare_adapter(self): + adapter = self.checkout / "tools/lfs-publication/lan_lfs_transfer.py" + adapter.parent.mkdir(parents=True) + adapter.write_bytes(self.adapter_blob) + prefix = "lfs.customtransfer.malecns-lan-https." + self.adapter_config = {"lfs.standalonetransferagent": "malecns-lan-https", + prefix + "path": "/usr/bin/python3", prefix + "args": "-B " + str(adapter), + prefix + "concurrent": "true", prefix + "direction": "both"} + self.local_adapter_config = self.adapter_config.copy() + self.config_exit = 0 + return adapter + + def assert_not_started(self): + self.assertFalse(self.cache.exists()) + self.assertFalse(self.receipt.exists()) + self.assertFalse(any("pull" in args for args in self.calls)) + + def test_success_binds_new_cache_exits_content_and_source_sha(self): + result = self.run_attempt() + self.assertEqual(json.loads(self.receipt.read_bytes()), result) + self.assertTrue(result["cache"]["initially_absent"]) + self.assertEqual(result["cache"]["before"], {"objects": 0, "bytes": 0}) + self.assertEqual(result["cache"]["after"], {"objects": 1, "bytes": 16}) + self.assertEqual(result["content_receipt"]["sha256"], D.archives.sha_file(self.content_receipt)["sha256"]) + self.assertEqual(len(result["tool_sources"]), 3) + self.assertFalse(result["learning_pass_claimed"]) + pull = next(args for args in self.calls if "pull" in args) + fsck = next(args for args in self.calls if "fsck" in args) + self.assertIn("--include=artifacts/**", pull) + self.assertIn("--exclude=", pull) + self.assertEqual(pull[-1], "origin") + self.assertIn("--dry-run", fsck) + for args in (pull, fsck): + self.assertIn("lfs.storage=" + str(self.cache), args) + self.assertIn("lfs.concurrenttransfers=2", args) + + def test_existing_cache_receipt_and_content_receipt_are_never_reused(self): + for path in (self.cache, self.receipt, self.content_receipt): + with self.subTest(path=path): + path.write_bytes(b"keep") + with self.assertRaises(ValueError): + self.run_attempt() + self.assertEqual(path.read_bytes(), b"keep") + self.assertFalse(any("pull" in args for args in self.calls)) + path.unlink() + + def test_wrong_head_or_remote_or_dirty_tree_refused(self): + for attr, value in (("head", "c" * 40), ("remote", "https://wrong.invalid/repo.git"), ("dirty", " M file")): + original = getattr(self, attr) + setattr(self, attr, value) + with self.subTest(attr=attr), self.assertRaises(ValueError): + self.run_attempt() + self.assert_not_started() + setattr(self, attr, original) + + def test_unsafe_paths_refused_before_transfer(self): + original = self.cache + for unsafe in (self.checkout / "payload-cache", self.base / ".." / "escape", + D.PROTECTED / "should-never-create"): + self.cache = unsafe + with self.subTest(path=unsafe), self.assertRaises(ValueError): + self.run_attempt() + self.assertFalse(any("pull" in args for args in self.calls)) + self.cache = original + self.receipt = self.checkout / D.PAYLOAD / "receipt.json" + with self.assertRaises(ValueError): + self.run_attempt() + self.assert_not_started() + + def test_pull_failure_retains_partial_and_never_fscks_or_retries(self): + self.pull_code = 9 + with self.assertRaises(ValueError): + self.run_attempt() + self.assertTrue(self.cache.exists()) + self.assertFalse(self.receipt.exists()) + self.assertFalse(self.content_receipt.exists()) + self.assertFalse(any("fsck" in args for args in self.calls)) + with self.assertRaises(ValueError): + self.run_attempt() + self.assertEqual(sum("pull" in args for args in self.calls), 1) + + def test_endpoint_and_custom_transfer_overrides_fail_closed(self): + for code in (0, 2): + self.config_exit = code + with self.subTest(code=code), self.assertRaises(ValueError): + self.run_attempt() + self.assert_not_started() + self.config_exit = 1 + (self.checkout / ".lfsconfig").write_text("[lfs]\nurl = https://not-approved.invalid\n") + with self.assertRaises(ValueError): + self.run_attempt() + self.assert_not_started() + + def test_optional_lan_adapter_is_exact_local_and_head_bound(self): + adapter = self.prepare_adapter() + with self.assertRaises(ValueError): + self.run_attempt() + self.assert_not_started() + report = D.run(self.commit, self.cache, self.receipt, self.content_receipt, + self.history, allow_lan_adapter=True) + self.assertTrue(report["lan_adapter"]["enabled"]) + self.assertEqual(report["tool_sources"]["lan_lfs_transfer.py"]["sha256"], + D.archives.sha_file(adapter)["sha256"]) + + def test_lan_wrong_blob_global_override_or_other_endpoint_rejected(self): + self.prepare_adapter() + self.adapter_blob = b"not the actual file" + with self.assertRaises(ValueError): + D.transfer_policy(self.checkout, self.commit, True) + self.adapter_blob = (self.checkout / "tools/lfs-publication/lan_lfs_transfer.py").read_bytes() + original = self.local_adapter_config["lfs.standalonetransferagent"] + self.local_adapter_config["lfs.standalonetransferagent"] = "" + with self.assertRaises(ValueError): + D.transfer_policy(self.checkout, self.commit, True) + self.local_adapter_config["lfs.standalonetransferagent"] = original + self.adapter_config["lfs.url"] = "https://wrong.invalid" + with self.assertRaises(ValueError): + D.transfer_policy(self.checkout, self.commit, True) + self.assert_not_started() + + def test_fsck_failure_does_not_call_content_or_publish_receipt(self): + self.fsck_code = 8 + with self.assertRaises(ValueError): + self.run_attempt() + self.verifier.assert_not_called() + self.assertTrue(self.cache.exists()) + self.assertFalse(self.receipt.exists()) + + def test_content_failure_leaves_no_transport_pass(self): + self.content_failure = True + with self.assertRaises(ValueError): + self.run_attempt() + self.assertFalse(self.receipt.exists()) + self.assertEqual(sum("pull" in args for args in self.calls), 1) + + def test_head_changed_during_verification_preserves_content_but_no_transport_pass(self): + def changed(*args): + result = self.verify(*args) + self.head = "d" * 40 + return result + self.verifier.side_effect = changed + with self.assertRaises(ValueError): + self.run_attempt() + self.assertTrue(self.content_receipt.exists()) + self.assertFalse(self.receipt.exists()) + + def test_cli_failure_never_prints_exception_diagnostics(self): + with patch.object(D, "run", side_effect=RuntimeError("secret should not escape")), \ + patch.object(D.sys, "argv", ["download_verify", "--expected-commit", self.commit, + "--cache", str(self.cache), "--receipt", str(self.receipt), + "--content-receipt", str(self.content_receipt), "--historical-inventory", str(self.history)]), \ + contextlib.redirect_stdout(io.StringIO()) as output: + self.assertEqual(D.main(), 1) + self.assertNotIn("secret should not escape", output.getvalue()) + self.assertIn("FAILED-NOT-RETRIED", output.getvalue()) + + +if __name__ == "__main__": + unittest.main() diff --git a/tools/lfs-publication/test_lan_lfs_transfer.py b/tools/lfs-publication/test_lan_lfs_transfer.py new file mode 100644 index 0000000..48fcbc2 --- /dev/null +++ b/tools/lfs-publication/test_lan_lfs_transfer.py @@ -0,0 +1,286 @@ +"""Pure temporary/mocked protocol tests: never SSH, curl, GPU, or real Git.""" +import contextlib +import hashlib +import io +import json +from pathlib import Path +import subprocess +import tempfile +import unittest +from unittest.mock import patch + +import lan_lfs_transfer as M + +BASE = "https://" + M.HOST + M.PREFIX +TOKEN = "synthetic-fixture-" + "credential-value" + + +class AdapterTests(unittest.TestCase): + def setUp(self): + self.temp = tempfile.TemporaryDirectory() + self.addCleanup(self.temp.cleanup) + self.root = Path(self.temp.name) / "clone" + self.git = self.root / ".git" + self.git.mkdir(parents=True) + self.data = b"synthetic content\x00\xff\n" + self.oid = hashlib.sha256(self.data).hexdigest() + self.size = len(self.data) + self.events = [] + self.agent = object.__new__(M.Agent) + self.agent.root, self.agent.git_dir = self.root, self.git + self.agent.operation, self.agent.emit = "upload", self.events.append + self.source = self.git / "lfs" / "objects" / self.oid[:2] / self.oid[2:4] / self.oid + self.source.parent.mkdir(parents=True) + self.source.write_bytes(self.data) + + def request(self, operation="upload", **extra): + value = {"event": operation, "oid": self.oid, "size": self.size, "action": None} + if operation == "upload": + value["path"] = str(self.source) + value.update(extra) + return value + + def init_message(self, **extra): + return dict(event="init", operation="upload", remote="origin", concurrent=True, + concurrenttransfers=2, **extra) + + def action(self, suffix="objects/" ): + return {"href": BASE + "/" + suffix + self.oid, + "header": {"Authorization": "Bearer " + TOKEN}} + + def test_strict_url_policy(self): + self.assertEqual(M.safe_url(BASE + "/objects/" + self.oid + "?signed=opaque"), + BASE + "/objects/" + self.oid + "?signed=opaque") + invalid = [BASE.replace("https:", "http:"), BASE.replace(M.HOST, M.IP), + BASE.replace(M.HOST, "other.example"), BASE.replace(M.HOST, M.HOST + ":444"), + BASE.replace(M.HOST, "user:opaque@" + M.HOST), BASE + "-other/objects/x", + BASE + "/../other", BASE + "/%2e%2e/other", BASE + "/objects/x#fragment", + BASE + "//objects/x", BASE + "/objects\\x", BASE + "\n"] + for url in invalid: + with self.subTest(url=url), self.assertRaises(M.TransferError): + M.safe_url(url) + + def test_headers_reject_injection_and_routing_overrides(self): + for headers in ({"Authorization": "x\r\nHost: bad"}, {"Host": "bad"}, + {"Authorization": "a", "authorization": "b"}, + {"Range": "bytes=1-"}, {"bad\nkey": "x"}, {"X": "\x00"}): + with self.subTest(headers=headers), self.assertRaises(M.TransferError): + M.safe_headers(headers) + + def test_init_checks_origin_and_isolated_git_directory(self): + values = [str(self.root), M.ORIGIN, str(self.git)] + with patch.object(M, "git_output", side_effect=values): + actual = M.Agent(self.init_message(), self.events.append, cwd=self.root) + self.assertEqual(actual.git_dir, self.git) + with patch.object(M, "git_output", side_effect=[str(self.root), "ssh://other/repo"]): + with self.assertRaisesRegex(M.TransferError, "origin-refused"): + M.Agent(self.init_message(), self.events.append, cwd=self.root) + + def test_original_source_and_excess_concurrency_refused(self): + with patch.object(M, "SOURCE", self.root): + with self.assertRaisesRegex(M.TransferError, "scientific-source-cwd"): + M.Agent(self.init_message(), self.events.append, cwd=self.root) + message = self.init_message() + message["concurrenttransfers"] = 3 + with self.assertRaisesRegex(M.TransferError, "concurrency"): + M.Agent(message, self.events.append, cwd=self.root) + + def test_ssh_authentication_is_strict_and_operation_scoped(self): + response = {"href": BASE, "header": {"Authorization": "Bearer " + TOKEN}} + result = subprocess.CompletedProcess([], 0, stdout=json.dumps(response).encode(), stderr=b"") + with patch.object(M.subprocess, "run", return_value=result) as call: + href, headers = self.agent.authenticate() + args = call.call_args.args[0] + self.assertIn("BatchMode=yes", args) + self.assertIn("StrictHostKeyChecking=yes", args) + self.assertEqual(args[-3:], ["git-lfs-authenticate", "qishizhe/digital-drosophila.git", "upload"]) + self.assertEqual(href, BASE) + self.assertIn(TOKEN, headers["Authorization"]) + self.assertNotIn(TOKEN, json.dumps(args)) + + def test_curl_secrets_only_in_stdin_and_secure_defaults(self): + result = subprocess.CompletedProcess([], 0, stdout=b"{}\n200", stderr=b"") + with patch.object(M.subprocess, "run", return_value=result) as call: + body = self.agent.curl("PUT", BASE + "/objects/" + self.oid + "?signature=" + TOKEN, + {"Authorization": "Bearer " + TOKEN}, upload=self.source) + self.assertEqual(body, b"{}") + self.assertEqual(call.call_args.args[0], ["curl", "-q", "--config", "-"]) + self.assertNotIn(TOKEN, json.dumps(call.call_args.args[0])) + config = call.call_args.kwargs["input"].decode() + for wanted in ('noproxy = "*"', M.HOST + ":443:" + M.IP, 'proto = "=https"', + "max-redirs = 0", "Accept: application/vnd.git-lfs+json", + "Content-Type: application/octet-stream", TOKEN): + self.assertIn(wanted, config) + self.assertNotIn("insecure", config) + self.assertNotIn("location", config) + self.assertNotIn("retry", config) + + def test_redirect_or_curl_error_is_sanitized(self): + for rc, output in ((0, b"redirect body\n302"), (22, b"")): + result = subprocess.CompletedProcess([], rc, stdout=output, stderr=TOKEN.encode()) + with patch.object(M.subprocess, "run", return_value=result): + with self.assertRaises(M.TransferError) as caught: + self.agent.curl("GET", BASE + "/objects/" + self.oid, {}) + self.assertNotIn(TOKEN, str(caught.exception)) + + def test_post_json_sets_both_gitea_headers(self): + result = subprocess.CompletedProcess([], 0, stdout=b"\n204", stderr=b"") + with patch.object(M.subprocess, "run", return_value=result) as call: + self.agent.curl("POST", BASE + "/verify", {}, body={"oid": self.oid, "size": self.size}) + config = call.call_args.kwargs["input"].decode() + self.assertIn("Accept: application/vnd.git-lfs+json", config) + self.assertIn("Content-Type: application/vnd.git-lfs+json", config) + + def test_batch_requests_basic_and_checks_exact_identity(self): + response = {"objects": [{"oid": self.oid, "size": self.size, "actions": {"upload": self.action()}}]} + with patch.object(self.agent, "authenticate", return_value=(BASE, {"Authorization": TOKEN})), \ + patch.object(self.agent, "curl", return_value=json.dumps(response).encode()) as call: + self.assertIn("upload", self.agent.batch(self.oid, self.size)) + args, kwargs = call.call_args + self.assertEqual(args[1], BASE + "/objects/batch") + self.assertEqual(args[2]["Accept"], "application/vnd.git-lfs+json") + self.assertEqual(kwargs["body"]["transfers"], ["basic"]) + response["objects"][0]["size"] += 1 + with patch.object(self.agent, "authenticate", return_value=(BASE, {})), \ + patch.object(self.agent, "curl", return_value=json.dumps(response).encode()): + with self.assertRaisesRegex(M.TransferError, "identity"): + self.agent.batch(self.oid, self.size) + + def test_batch_action_host_rejected(self): + action = self.action() + action["href"] = action["href"].replace(M.HOST, "other.example") + response = {"objects": [{"oid": self.oid, "size": self.size, "actions": {"upload": action}}]} + with patch.object(self.agent, "authenticate", return_value=(BASE, {})), \ + patch.object(self.agent, "curl", return_value=json.dumps(response).encode()): + with self.assertRaisesRegex(M.TransferError, "authority"): + self.agent.batch(self.oid, self.size) + + def test_upload_chunked_exact_value_allowed_in_action_and_put(self): + action = self.action() + action["header"]["Transfer-Encoding"] = "chunked" + response = {"objects": [{"oid": self.oid, "size": self.size, "actions": {"upload": action}}]} + with patch.object(self.agent, "authenticate", return_value=(BASE, {})), \ + patch.object(self.agent, "curl", return_value=json.dumps(response).encode()): + self.assertEqual(self.agent.batch(self.oid, self.size)["upload"]["header"]["Transfer-Encoding"], "chunked") + result = subprocess.CompletedProcess([], 0, stdout=b"\n200", stderr=b"") + with patch.object(M.subprocess, "run", return_value=result) as call: + self.agent.curl("PUT", action["href"], action["header"], upload=self.source) + config = call.call_args.kwargs["input"].decode() + self.assertIn('header = "Transfer-Encoding: chunked"', config) + self.assertIn('request = "PUT"', config) + self.assertIn("upload-file = ", config) + + def test_chunked_forbidden_outside_upload_or_for_other_values(self): + for value in ("gzip", "CHUNKED", "chunked, gzip", "chunked\r\nX: y", " chunked"): + with self.subTest(value=value), self.assertRaises(M.TransferError): + self.agent.curl("PUT", BASE + "/objects/" + self.oid, + {"Transfer-Encoding": value}, upload=self.source) + for method, kwargs in (("GET", {}), ("POST", {"body": {}}), ("PUT", {})): + with self.subTest(method=method, kwargs=kwargs), self.assertRaises(M.TransferError): + self.agent.curl(method, BASE + "/objects/" + self.oid, + {"Transfer-Encoding": "chunked"}, **kwargs) + with self.assertRaises(M.TransferError): + M.safe_headers({"Transfer-Encoding": "chunked"}) + for operation, name in (("upload", "verify"), ("download", "download")): + self.agent.operation = operation + action = self.action() + action["header"]["Transfer-Encoding"] = "chunked" + response = {"objects": [{"oid": self.oid, "size": self.size, "actions": {name: action}}]} + with patch.object(self.agent, "authenticate", return_value=(BASE, {})), \ + patch.object(self.agent, "curl", return_value=json.dumps(response).encode()): + with self.subTest(operation=operation, action=name), self.assertRaises(M.TransferError): + self.agent.batch(self.oid, self.size) + + def test_upload_existing_object_needs_no_put(self): + with patch.object(self.agent, "batch", return_value={}) as batch, patch.object(self.agent, "curl") as curl: + result = self.agent.transfer(self.request()) + self.assertEqual(result, {"event": "complete", "oid": self.oid}) + batch.assert_called_once() + curl.assert_not_called() + self.assertEqual(self.events[-1]["bytesSoFar"], self.size) + + def test_upload_put_then_verification_post(self): + actions = {"upload": self.action(), "verify": self.action("verify/")} + with patch.object(self.agent, "batch", return_value=actions), \ + patch.object(self.agent, "curl", return_value=b"") as curl: + self.agent.transfer(self.request()) + self.assertEqual([c.args[0] for c in curl.call_args_list], ["PUT", "POST"]) + self.assertEqual(curl.call_args_list[1].kwargs["body"], {"oid": self.oid, "size": self.size}) + + def test_upload_wrong_sha_fails_before_network(self): + self.source.write_bytes(b"x" * self.size) + with patch.object(self.agent, "batch") as batch: + with self.assertRaisesRegex(M.TransferError, "sha"): + self.agent.transfer(self.request()) + batch.assert_not_called() + + def test_upload_outside_lfs_store_refused(self): + other = self.root / self.oid + other.write_bytes(self.data) + with self.assertRaisesRegex(M.TransferError, "outside-current-lfs"): + self.agent.transfer(self.request(path=str(other))) + + def test_upload_source_mutation_detected(self): + def change(*args, **kwargs): + self.source.write_bytes(b"changed") + with patch.object(self.agent, "batch", return_value={"upload": self.action()}), \ + patch.object(self.agent, "curl", side_effect=change): + with self.assertRaisesRegex(M.TransferError, "upload-source-changed"): + self.agent.transfer(self.request()) + + def test_download_is_fresh_unique_and_verified(self): + self.agent.operation = "download" + def fetch(*args, **kwargs): + kwargs["download"].write_bytes(self.data) + return b"" + with patch.object(self.agent, "batch", return_value={"download": self.action()}), \ + patch.object(self.agent, "curl", side_effect=fetch) as curl: + first = self.agent.transfer(self.request("download")) + second = self.agent.transfer(self.request("download")) + self.assertNotEqual(first["path"], second["path"]) + self.assertEqual(Path(first["path"]).read_bytes(), self.data) + self.assertEqual(curl.call_count, 2) + self.assertEqual(self.source.read_bytes(), self.data) + + def test_download_hash_failure_retains_partial(self): + self.agent.operation = "download" + def fetch(*args, **kwargs): + kwargs["download"].write_bytes(b"x" * self.size) + with patch.object(self.agent, "batch", return_value={"download": self.action()}), \ + patch.object(self.agent, "curl", side_effect=fetch): + with self.assertRaisesRegex(M.TransferError, "sha"): + self.agent.transfer(self.request("download")) + partials = list((self.git / "lfs" / "lan-transfer-tmp").glob("*.partial")) + self.assertEqual(len(partials), 1) + self.assertEqual(partials[0].read_bytes(), b"x" * self.size) + + def test_protocol_init_progress_completion_terminate(self): + requests = [self.init_message(), self.request(), {"event": "terminate"}] + incoming = io.StringIO("".join(json.dumps(x) + "\n" for x in requests)) + with patch.object(self.agent, "batch", return_value={}): + code = M.serve(incoming, self.events.append, factory=lambda message, send: self.agent) + self.assertEqual(code, 0) + self.assertEqual(self.events[0], {}) + self.assertEqual(self.events[-1], {"event": "complete", "oid": self.oid}) + + def test_transfer_error_continues_and_never_echoes_exception_secret(self): + incoming = io.StringIO("\n".join(json.dumps(x) for x in + [self.init_message(), self.request(), self.request(), {"event": "terminate"}]) + "\n") + with patch.object(self.agent, "transfer", side_effect=[RuntimeError(TOKEN), {"event": "complete", "oid": self.oid}]): + code = M.serve(incoming, self.events.append, factory=lambda message, send: self.agent) + self.assertEqual(code, 0) + self.assertIn("error", self.events[1]) + self.assertNotIn(TOKEN, json.dumps(self.events)) + self.assertNotIn("error", self.events[2]) + + def test_bad_initialization_uses_init_error_schema(self): + incoming = io.StringIO(json.dumps(self.init_message()) + "\n") + with patch.object(M, "git_output", side_effect=RuntimeError(TOKEN)): + code = M.serve(incoming, self.events.append) + self.assertEqual(code, 1) + self.assertEqual(self.events[0]["error"]["code"], 32) + self.assertNotIn(TOKEN, json.dumps(self.events)) + + +if __name__ == "__main__": + unittest.main() diff --git a/tools/lfs-publication/test_verify_publication.py b/tools/lfs-publication/test_verify_publication.py new file mode 100644 index 0000000..30bd575 --- /dev/null +++ b/tools/lfs-publication/test_verify_publication.py @@ -0,0 +1,184 @@ +"""Aggregate verification tests: temporary files and an identity codec only. + +These test metadata/content binding, not zstd itself. The separate archive-tool +suite includes its optional real-zstd integration test. No real project data, +network, Git mutation, GPU, or persistent outputs are used here. +""" +import contextlib +import gzip +import io +import json +from pathlib import Path +import subprocess +import sys +import tempfile +import unittest +from unittest.mock import patch + +import publish_archives as P +import verify_publication as V + + +def identity_codec(*args, **kwargs): + return [sys.executable, "-c", + "import sys,shutil;shutil.copyfileobj(sys.stdin.buffer,sys.stdout.buffer)"] + + +class AggregateTests(unittest.TestCase): + def setUp(self): + self.temp = tempfile.TemporaryDirectory() + self.addCleanup(self.temp.cleanup) + self.base = Path(self.temp.name) + self.source = self.base / "source" + self.data = self.source / "data" + self.data.mkdir(parents=True) + (self.data / "LICENSE").write_bytes(b"Synthetic license\n") + (self.data / "one.feather").write_bytes(b"fake binary bytes\x00") + self.pins = { + p.relative_to(self.source).as_posix(): dict( + path=p.relative_to(self.source).as_posix(), kind="file", **P.sha_file(p)) + for p in sorted(self.data.iterdir()) + } + self.plan = { + "schema": "lfs-publication-plan-v1", "source_root": str(self.source), + "groups": [{ + "id": "malecns-synaptic-partners", "paths": ["data"], + "license": {"evidence_file": "LICENSE", + "evidence_sha256": self.pins["data/LICENSE"]["sha256"]}, + "provenance": {"registered_file_sha256": self.pins["data/one.feather"]["sha256"]}, + }], + "exclude_paths": [], + } + self.plan_file = self.base / "plan.json" + self.root, self.work = self.base / "payload", self.base / "work" + self.receipt = self.base / "receipt.json" + self.history_file = self.base / "history.jsonl.gz" + for item in (patch.object(P, "SOURCE_ROOT", str(self.source)), + patch.object(P, "CHUNK_BYTES", 4096), + patch.object(P, "zstd_command", identity_codec)): + item.start() + self.addCleanup(item.stop) + + def pack(self): + self.plan_file.write_bytes(P.canonical(self.plan)) + with contextlib.redirect_stdout(io.StringIO()): + P.pack(self.plan_file, self.root, self.work) + + def verify(self, history=False): + with contextlib.redirect_stdout(io.StringIO()): + return V.verify_publication(self.root, self.receipt, + self.history_file if history else None) + + def write_history(self, rows): + with gzip.open(self.history_file, "wt", encoding="utf-8") as handle: + for row in rows: + handle.write(json.dumps(row) + "\n") + + def test_full_without_history_and_exclusive_receipt(self): + self.pack() + result = self.verify() + self.assertTrue(result["pass_all"]) + self.assertFalse(result["fresh_download_proven"]) + self.assertEqual(result["historical_status"], "NOT_REQUESTED") + self.assertEqual(result["source_files"], 2) + with self.assertRaises(ValueError): + self.verify() + + def test_full_history_absolute_path_and_skipped_nonfile(self): + self.pack() + rows = [dict(row) for row in self.pins.values()] + # Use the exact registered source_root prefix on either Windows/Linux. + rows[0]["path"] = str(self.source) + "/" + rows[0]["path"] + rows.append({"path": "outside/link", "kind": "symlink"}) + self.write_history(rows) + result = self.verify(history=True) + report = json.loads(self.receipt.read_bytes()) + self.assertEqual(result["historical_status"], "FULL_CURRENT_MEMBER_MATCH") + self.assertEqual(report["historical_inventory"]["nonfile_records_skipped"], 1) + + def test_partial_history_is_not_full_historical_pass(self): + self.pack() + self.write_history([self.pins["data/LICENSE"], + {"path": "data/one.feather", "kind": "symlink"}]) + self.verify(history=True) + history = json.loads(self.receipt.read_bytes())["historical_inventory"] + self.assertEqual(history["status"], "PARTIAL_CURRENT_MEMBER_COVERAGE") + self.assertFalse(history["all_current_members_historically_matched"]) + self.assertEqual(history["current_members_without_regular_history"], 1) + self.assertEqual(history["current_members_with_nonfile_history"], 1) + + def test_history_mismatch_writes_no_receipt(self): + self.pack() + self.write_history([dict(self.pins["data/LICENSE"], sha256="0" * 64)]) + with self.assertRaisesRegex(ValueError, "Historical member mismatch"): + self.verify(history=True) + self.assertFalse(self.receipt.exists()) + + def test_registered_feather_sha_mismatch(self): + self.plan["groups"][0]["provenance"]["registered_file_sha256"] = "0" * 64 + self.pack() + with self.assertRaisesRegex(ValueError, "Registered feather SHA"): + self.verify() + + def test_multiple_feather_members_refused(self): + (self.data / "two.feather").write_bytes(b"another fixture") + self.pack() + with self.assertRaisesRegex(ValueError, "exactly one feather"): + self.verify() + + def test_license_evidence_sha_mismatch(self): + self.plan["groups"][0]["license"]["evidence_sha256"] = "0" * 64 + self.pack() + with self.assertRaisesRegex(ValueError, "License evidence SHA"): + self.verify() + + def test_extra_root_entry_refused(self): + self.pack() + (self.root / "unlisted").write_bytes(b"x") + with self.assertRaisesRegex(ValueError, "extra/missing"): + self.verify() + + def test_wrong_catalog_pin_refused(self): + self.pack() + summary = P.json_read(self.root / "pack-summary.json") + summary["groups"][0]["catalog_sha256"] = "0" * 64 + (self.root / "pack-summary.json").write_bytes(P.canonical(summary)) + with self.assertRaisesRegex(ValueError, "Catalog SHA"): + self.verify() + + def test_root_file_count_mismatch(self): + self.pack() + summary = P.json_read(self.root / "pack-summary.json") + summary["source_files"] = 3 + (self.root / "pack-summary.json").write_bytes(P.canonical(summary)) + with self.assertRaisesRegex(ValueError, "Root source file count"): + self.verify() + + def test_receipt_inside_payload_refused(self): + self.pack() + self.receipt = self.root / "receipt.json" + with self.assertRaisesRegex(ValueError, "outside"): + self.verify() + + def test_plan_raw_sha_mismatch(self): + self.pack() + path = self.root / "plan.json" + path.write_bytes(path.read_bytes() + b"\n") + with self.assertRaisesRegex(ValueError, "plan SHA"): + self.verify() + + +class GitMetadataTests(unittest.TestCase): + def test_ascii_head_with_non_ascii_stderr(self): + result = subprocess.CompletedProcess([], 0, stdout=b"a" * 40 + b"\n", stderr=bytes([255])) + with patch.object(V.subprocess, "run", return_value=result): + self.assertEqual(V.git_identity()["head"], "a" * 40) + + def test_failed_git_with_non_ascii_stderr_is_optional(self): + result = subprocess.CompletedProcess([], 128, stdout=b"", stderr=bytes([255])) + with patch.object(V.subprocess, "run", return_value=result): + self.assertIsNone(V.git_identity()["head"]) + + +if __name__ == "__main__": + unittest.main() diff --git a/tools/lfs-publication/verify_publication.py b/tools/lfs-publication/verify_publication.py new file mode 100644 index 0000000..87fbe4d --- /dev/null +++ b/tools/lfs-publication/verify_publication.py @@ -0,0 +1,233 @@ +"""Verify a complete downloaded publication and exclusively write a new receipt. + +This verifies the supplied bytes, not how they arrived or their external trust +anchor. No extraction, LFS-cache lookup, source modification, or Git mutation. +""" +from __future__ import annotations + +import argparse +from datetime import datetime, timezone +import gzip +import hashlib +import json +from pathlib import Path +import subprocess + +import publish_archives as archives + + +def require(condition, message): + if not condition: + raise ValueError(message) + + +def equal(left, right): + return archives.canonical(left) == archives.canonical(right) + + +def history_path(value, source_root): + require(isinstance(value, str), "Historical path must be text") + prefix = source_root.rstrip("/") + "/" + if value.startswith(prefix): + value = value[len(prefix):] + return archives.relpath(value) + + +def load_history(path, source_root): + files, nonfiles, seen = {}, {}, set() + total = 0 + with gzip.open(path, "rt", encoding="utf-8") as inp: + for line in inp: + row = archives.json_bytes(line) + require(isinstance(row, dict), "Historical row must be an object") + relative = history_path(row.get("path"), source_root) + require(relative not in seen, "Duplicate historical path: " + relative) + seen.add(relative) + total += 1 + if row.get("kind", "file") != "file": + nonfiles[relative] = row.get("kind") + continue + archives.check_digest_row(row) + files[relative] = {"bytes": row["bytes"], "sha256": row["sha256"]} + return files, nonfiles, total + + +def git_identity(): + try: + process = subprocess.run(["git", "rev-parse", "--verify", "HEAD"], + capture_output=True, check=False) + head = process.stdout.decode("ascii").strip() + if process.returncode == 0 and len(head) in (40, 64) and all(x in "0123456789abcdef" for x in head): + return {"cwd": str(Path.cwd()), "head": head, + "scope": "HEAD observed at invocation cwd; not a clean-tree or payload-to-commit proof"} + except (OSError, UnicodeError): + pass + return {"cwd": str(Path.cwd()), "head": None, "scope": "Git HEAD unavailable"} + + +def verify_publication(payload_root, receipt, historical_inventory=None): + root, receipt = archives.no_links(payload_root), archives.no_links(receipt) + require(root.is_dir(), "Payload root is not a directory") + require(receipt != root and root not in receipt.parents, + "Receipt must be outside the immutable payload tree") + require(not receipt.exists(), "Receipt already exists; refusing overwrite/retry") + require(receipt.parent.is_dir(), "Receipt parent must already exist") + controls = {name: archives.sha_file(root / name) for name in ("plan.json", "pack-summary.json")} + plan = archives.json_read(root / "plan.json") + summary = archives.json_read(root / "pack-summary.json") + archives.validate_plan(plan) + require(summary.get("schema") == "lfs-publication-pack-v1" and summary.get("complete") is True, + "Pack summary is not complete") + require(summary.get("plan_sha256") == controls["plan.json"]["sha256"], "Root plan SHA mismatch") + plan_groups = {g["id"]: g for g in plan["groups"]} + summary_groups = summary.get("groups") + require(isinstance(summary_groups, list), "Missing summary groups") + require(all(isinstance(g, dict) and isinstance(g.get("group"), str) for g in summary_groups), + "Invalid summary group") + listed = [g["group"] for g in summary_groups] + require(listed == list(plan_groups), "Summary group inventory/order differs from plan") + require({p.name for p in root.iterdir()} == set(plan_groups) | {"plan.json", "pack-summary.json"}, + "Payload root has extra/missing entries; preserve and investigate") + for p in root.iterdir(): + archives.no_links(p) + historical = None + if historical_inventory is not None: + hpath = archives.no_links(historical_inventory) + require(hpath != receipt, "Receipt cannot replace historical inventory") + hpin = archives.sha_file(hpath) + hfiles, hnonfiles, htotal = load_history(hpath, plan["source_root"]) + historical = {"path": str(hpath), "sha256": hpin["sha256"], "bytes": hpin["bytes"], + "records": htotal, "regular_file_records": len(hfiles), + "nonfile_records_skipped": len(hnonfiles)} + else: + hfiles, hnonfiles = {}, {} + matched, missing, nonfile_current = 0, [], 0 + publication_paths, results, manifest_controls = set(), [], {} + for group_summary in summary_groups: + group_id = group_summary["group"] + group, directory = plan_groups[group_id], root / group_id + require(directory.is_dir(), "Missing group directory: " + group_id) + cat_path = directory / "catalog.json" + cat_pin = archives.sha_file(cat_path) + require(cat_pin["sha256"] == group_summary.get("catalog_sha256"), "Catalog SHA mismatch: " + group_id) + catalog = archives.json_read(cat_path) + require(catalog.get("group_id") == group_id and catalog.get("source_root") == plan["source_root"] + and catalog.get("plan_sha256") == controls["plan.json"]["sha256"], + "Catalog identity/plan differs: " + group_id) + for key, wanted in (("source_paths", group["paths"]), ("license", group["license"]), + ("provenance", group["provenance"])): + require(equal(catalog.get(key), wanted), "Catalog plan metadata mismatch: " + group_id + "/" + key) + actual = archives.verify(directory) + expected_summary = {"group": group_id, "files": actual["source_files"], + "source_bytes": actual["source_bytes"], "archive_bytes": actual["archive_bytes"], + "chunks": len(catalog["chunks"]), "catalog_sha256": cat_pin["sha256"]} + require(equal(group_summary, expected_summary), "Group summary differs from actual payload: " + group_id) + members_path = directory / "members.jsonl.gz" + manifest_controls[str(members_path)] = catalog["members"] + manifest_controls[str(cat_path)] = cat_pin + manifest_controls[str(directory / "exclusions.jsonl.gz")] = catalog["exclusions"] + feather, member_lookup, group_matched, group_missing = [], {}, 0, 0 + for row in archives.iter_members(members_path): + name = row["path"] + require(name not in publication_paths, "Duplicate member across groups: " + name) + require(any(name == p or name.startswith(p + "/") for p in group["paths"]), + "Member outside group whitelist: " + name) + require(not any(name == p or name.startswith(p + "/") for p in plan.get("exclude_paths", [])), + "Excluded path appears in payload: " + name) + publication_paths.add(name) + member_lookup[name] = row + if name.lower().endswith(".feather"): + feather.append(row) + if historical is not None: + if name in hfiles: + require(equal(hfiles[name], {"bytes": row["bytes"], "sha256": row["sha256"]}), + "Historical member mismatch: " + name) + matched += 1 + group_matched += 1 + else: + missing.append(name) + group_missing += 1 + nonfile_current += int(name in hnonfiles) + require(len(member_lookup) == actual["source_files"], "Member inventory count changed") + provenance = group["provenance"] + registered = provenance.get("registered_file_sha256") if isinstance(provenance, dict) else None + if group_id == "malecns-synaptic-partners": + require(registered is not None, "Synaptic-partners registered file SHA missing") + file_anchor = None + if registered is not None: + require(isinstance(registered, str) and archives.HEX.fullmatch(registered) is not None, + "Invalid registered file SHA") + require(len(feather) == 1, "Registered-file group must contain exactly one feather: " + group_id) + require(feather[0]["sha256"] == registered, "Registered feather SHA mismatch: " + group_id) + file_anchor = feather[0] + license_anchor = None + license_meta = group["license"] + if isinstance(license_meta, dict) and "evidence_file" in license_meta: + relative = archives.relpath(license_meta["evidence_file"]) + path = group["paths"][0] + "/" + relative + require(path in member_lookup, "License evidence absent from payload: " + path) + require(member_lookup[path]["sha256"] == license_meta.get("evidence_sha256"), + "License evidence SHA mismatch: " + path) + license_anchor = member_lookup[path] + result = dict(actual, catalog_path=str(cat_path), registered_file_verified=file_anchor, + license_evidence_verified=license_anchor, + historical_matched=group_matched if historical is not None else None, + historical_missing=group_missing if historical is not None else None) + results.append(result) + print(json.dumps({"group_verified": group_id, "source_files": actual["source_files"], + "source_bytes": actual["source_bytes"], "archive_bytes": actual["archive_bytes"]}), flush=True) + files = sum(r["source_files"] for r in results) + source_bytes = sum(r["source_bytes"] for r in results) + archive_bytes = sum(r["archive_bytes"] for r in results) + require(type(summary.get("source_files")) is int and summary["source_files"] == files, + "Root source file count mismatch") + require(type(summary.get("source_bytes")) is int and summary["source_bytes"] == source_bytes, + "Root source byte count mismatch") + for name, pin in controls.items(): + require(archives.sha_file(root / name) == pin, "Root control changed during verification: " + name) + for path, pin in manifest_controls.items(): + require(archives.sha_file(path) == pin, "Group control changed during verification: " + path) + require({p.name for p in root.iterdir()} == set(plan_groups) | {"plan.json", "pack-summary.json"}, + "Payload root inventory changed during verification") + if historical is not None: + require(archives.sha_file(hpath) == hpin, "Historical inventory changed during verification") + historical.update(status="FULL_CURRENT_MEMBER_MATCH" if not missing else "PARTIAL_CURRENT_MEMBER_COVERAGE", + all_current_members_historically_matched=not missing, + current_members_matched=matched, current_members_without_regular_history=len(missing), + current_members_with_nonfile_history=nonfile_current, + missing_sample=missing[:20], missing_sample_truncated=len(missing) > 20, + historical_regular_files_outside_publication=len(set(hfiles) - publication_paths), + scope="Only publication members with regular-file history compared; not a full historical source-tree audit") + else: + historical = {"status": "NOT_REQUESTED", "all_current_members_historically_matched": None} + aggregate = [{"group": r["group"], "catalog_sha256": r["catalog_sha256"], + "archive_sha256": r["archive_sha256"], "source_files": r["source_files"], + "source_bytes": r["source_bytes"], "archive_bytes": r["archive_bytes"]} for r in results] + report = {"schema": "lfs-publication-aggregate-verification-v1", "pass_all": True, + "verified_utc": datetime.now(timezone.utc).isoformat(), "payload_root": str(root), + "receipt": str(receipt), "plan": {"path": str(root / "plan.json"), **controls["plan.json"]}, + "pack_summary": {"path": str(root / "pack-summary.json"), **controls["pack-summary.json"]}, + "groups": results, "source_files": files, "source_bytes": source_bytes, + "archive_bytes": archive_bytes, "aggregate_inventory_sha256": hashlib.sha256(archives.canonical(aggregate)).hexdigest(), + "historical_inventory": historical, "git": git_identity(), + "fresh_download_proven": False, + "scope": "Given payload bytes verified against plan/catalog/members and optional historical overlap; provenance/plan authenticity and fresh-clone transfer evidence are caller responsibilities"} + archives.write_new(receipt, archives.canonical(report)) + return {"pass_all": True, "receipt": str(receipt), "receipt_sha256": archives.sha_file(receipt)["sha256"], + "groups": len(results), "source_files": files, "source_bytes": source_bytes, + "archive_bytes": archive_bytes, "aggregate_inventory_sha256": report["aggregate_inventory_sha256"], + "historical_status": historical["status"], "fresh_download_proven": False} + + +def main(): + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--payload-root", required=True) + parser.add_argument("--receipt", required=True) + parser.add_argument("--historical-inventory") + args = parser.parse_args() + print(json.dumps(verify_publication(args.payload_root, args.receipt, args.historical_inventory), + sort_keys=True, ensure_ascii=False, allow_nan=False), flush=True) + + +if __name__ == "__main__": + main()