From 5b1d1b72d7683b5c3dcc1f78b408e1d9dd2832ac Mon Sep 17 00:00:00 2001 From: Digital Drosophila Archive Date: Thu, 1 Oct 2026 03:51:01 +0800 Subject: [PATCH] Record fresh LFS restore verification and final publication checksums --- registry/publication-20261001/README.md | 4 + registry/publication-20261001/SHA256SUMS | 205 ++++ .../fresh-content-verification.json | 206 ++++ .../fresh-download-verification.json | 83 ++ .../publication-manifest.json | 1035 +++++++++++++++++ .../source-guard-final.json | 123 ++ .../seal_publication_manifest.py | 50 + 7 files changed, 1706 insertions(+) create mode 100644 registry/publication-20261001/SHA256SUMS create mode 100644 registry/publication-20261001/fresh-content-verification.json create mode 100644 registry/publication-20261001/fresh-download-verification.json create mode 100644 registry/publication-20261001/publication-manifest.json create mode 100644 registry/publication-20261001/source-guard-final.json create mode 100644 tools/lfs-publication/seal_publication_manifest.py diff --git a/registry/publication-20261001/README.md b/registry/publication-20261001/README.md index f50dc4d..bdaa085 100644 --- a/registry/publication-20261001/README.md +++ b/registry/publication-20261001/README.md @@ -2,6 +2,10 @@ 这是现有下载资源的归档发布，不是新的科学实验，不表示 Phase 4AR 已完成或学习通过。用户明确选择保留公开仓库，仅上传确认可公开再分发的资源。活动项目工作树和 Phase 1–4AQ 冻结文件不参与写入。 +**本次发布完成：PASS。** 数据提交 `6e33e05ede21b98c0088139e9bc4c049498c4d41` 已推送到 `codex/lfs-public-resources`，并从该远端提交使用独立空 LFS store 实际重新下载；pull、fsck 及 8 组全部内部成员校验通过。详见 [实际下载回执](fresh-download-verification.json)、[逐组内容核验](fresh-content-verification.json)及[源保护检查](source-guard-final.json)。默认分支未更改，也未自动合并。 + +最终完整性入口为 [publication-manifest.json](publication-manifest.json) 和 [SHA256SUMS](SHA256SUMS)。下载所有 LFS 对象后，可在仓库根目录运行 `sha256sum -c registry/publication-20261001/SHA256SUMS`；它不应在仅有 LFS pointer 的 checkout 中运行。最终文档提交只附加核验记录，不更改上述数据提交的 payload。 + ## 范围与许可 | 资源 | 许可/依据 | 本次处理 | diff --git 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Not an entire server backup or scientific pass.", + "self_hash_policy": "Manifest is covered by SHA256SUMS; SHA256SUMS self-hash is omitted and its bytes are bound by the final Git commit." +} diff --git a/registry/publication-20261001/source-guard-final.json b/registry/publication-20261001/source-guard-final.json new file mode 100644 index 0000000..e87acdf --- /dev/null +++ b/registry/publication-20261001/source-guard-final.json @@ -0,0 +1,123 @@ +{ + "disk_free_bytes": { + "/data/digital-drosophila": 645469605888, + "/tmp/malecns-lfs-publication-20261001-bI1u07/repo/registry/publication-20261001": 856655966208 + }, + "license_evidence": [ + { + "bytes": 18657, + "group": "celltype-explorer", + "path": "/data/digital-drosophila/experiments/phase4f-retinotopic-vision/external-resources/celltype-explorer/LICENSE", + "sha256": "9ba9550ad48438d0836ddab3da480b3b69ffa0aac7b7878b5a0039e7ab429411" + }, + { + "bytes": 35149, + "group": "visualpathways", + "path": 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"ca9f69c731e56c50534d864d0ce780f286b5ab2d786a1a85fadb22dc09c0ccf5" + }, + { + "bytes": 2076, + "path": "/data/digital-drosophila/models/male-cns-lif/normal-conditioning-v1/test_run_normal.py", + "sha256": "2ee3ad3c58c0dfd83aaaa4c4c9bd01e84eb245c61048c105ed8f3031db74cb40" + } + ], + "registered_scientific_commit": "80aeb2093db655329774eff7b32fb6e417b8b40b", + "registration_sha256": "b63e6281b6505ca3b60acb467dd0b3fae274cf513dcbfd653649ba52e9ba9740", + "schema": "lfs-publication-source-guard-v1", + "scope": "16 registered Phase 4AR source files, registration, pinned upstream checkout and license evidence; not a scientific rerun or full historical checksum audit" +} diff --git a/tools/lfs-publication/seal_publication_manifest.py b/tools/lfs-publication/seal_publication_manifest.py new file mode 100644 index 0000000..219c3eb --- /dev/null +++ b/tools/lfs-publication/seal_publication_manifest.py @@ -0,0 +1,50 @@ +"""Generate checksums for this publication only, after real download success.""" +from datetime import datetime, timezone +import json +from pathlib import Path +import subprocess + +from publish_archives import canonical, no_links, sha_file, write_new + + +def main(): + root = no_links(Path.cwd()) + protected = Path('/data/digital-drosophila') + if root == protected or protected in root.parents or not (root / '.git').is_dir(): + raise ValueError('Only an isolated publication checkout is allowed') + folder = root / 'registry/publication-20261001' + output, checksums = folder / 'publication-manifest.json', folder / 'SHA256SUMS' + if output.exists() or checksums.exists(): + raise ValueError('Never overwrite a publication manifest') + transport = json.loads((folder / 'fresh-download-verification.json').read_bytes()) + guard = json.loads((folder / 'source-guard-final.json').read_bytes()) + head = subprocess.check_output(['git', 'rev-parse', 'HEAD'], text=True).strip() + if not (transport['pass_all'] and transport['fresh_download_proven'] and guard['pass_all'] + and transport['expected_commit'] == head): + raise ValueError('Actual transport/source evidence or commit binding is missing') + files = [root / p for p in ('.gitattributes', '.gitignore', 'NOTICE.md')] + for prefix in ('artifacts/public-resources-20261001', 'artifacts/lfs-smoke', + 'registry/publication-20261001', 'tools/lfs-publication'): + for p in (root / prefix).rglob('*'): + no_links(p) + if '__pycache__' not in p.parts and p.is_file(): + files.append(p) + rows = [dict(path=p.relative_to(root).as_posix(), **sha_file(p)) for p in sorted(files)] + if len({row['path'] for row in rows}) != len(rows): + raise ValueError('Duplicate publication path') + manifest = dict(schema='lfs-publication-final-manifest-v1', pass_all=True, + generated_utc=datetime.now(timezone.utc).isoformat(), data_commit=head, + branch='codex/lfs-public-resources', repository_public=True, + aggregate_inventory_sha256=transport['aggregate_inventory_sha256'], + logical_files=len(rows), logical_bytes=sum(r['bytes'] for r in rows), + files=rows, + scope='Publication payload, tools, notices and evidence only; original file SHA are nested in members.jsonl.gz. Not an entire server backup or scientific pass.', + self_hash_policy='Manifest is covered by SHA256SUMS; SHA256SUMS self-hash is omitted and its bytes are bound by the final Git commit.') + write_new(output, canonical(manifest)) + rows.append(dict(path=output.relative_to(root).as_posix(), **sha_file(output))) + write_new(checksums, ''.join(r['sha256'] + ' ' + r['path'] + '\n' for r in sorted(rows, key=lambda r: r['path'])).encode()) + print(json.dumps(dict(pass_all=True, files=len(rows), manifest=sha_file(output), checksums=sha_file(checksums)))) + + +if __name__ == '__main__': + main()